|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038304 ID=TCONS_00038304|Name=TCONS_00038304|organism=Clytia hemisphaerica|type=transcript|length=861bp
catcaggaCGACGTGTGAAAGCAAGCGATGATGGAAGTTATGACAGAAGG
CTTTTTGGATTCAAGAAAAGGAGTAGAGTAGAGAAGCTGTTGTTATCGTT
CAAGATTTGCTGCAGAAAGTTTGGTTTTGAGGTTGTAAAAAGAGTTCTTC
AAAGCGAAAGAACTCTGGAAACCTCACTTCGTGCTCACAACTGGACAGCT
TGCTCACACTATGTTTGAGATATAAACTGGAGCTTCAAGCTAAAATTCAC
TTGGCGATTTGATACGAAACCAGCTGGCAACACCATTGTTTCAACGTCGA
TCCTGCGTAAAGAGTCAATCCTCAAagtacaaattttcattttatatgga
atgtgtggtaaaacatttgtAGATCTTCGGCCCAACAAATTATTCTGTTC
TTGCCTCGACGCTTTTCtcctacaaaaccttagaattGCAACGTACACTT
GCAGAGACTTGAAAAGCGTATTTATAGCTTTAGAGTTCCAATTAATTACT
ACACATCTcattatacacccctgtctcacagccccggtggaacttttttc
ctcagttgggATAAAAACTCCCATTAAAATCCGAATATCCGGATATAAAT
TCTGTTGTTCCAAGAAGAATTCAGTGggatttcgaatggggatgaaaaca
aagtcaatttatCAGTGGGGCTGAATAtacagggtattttcccactgggg
acaaaatctttcccaaattttccagaggggctggggtcccagcgggtcta
tgacacaggggtgttattatCAACAGGTGTCAttcaaattctttgaaaac
taaACACTGTACAAAGAGTACGAATCTCTTGACCATGCAAGAAGTATTAT
CCCTGTCTGTC Run BLAST on NCBI transcript from alignment at sc0001822:21962..24581- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038304 ID=TCONS_00038304|Name=TCONS_00038304|organism=Clytia hemisphaerica|type=transcript|length=2620bp|location=Sequence derived from alignment at sc0001822:21962..24581- (Clytia hemisphaerica)
CATCAGGACGACGTGTGAAAGCAAGCGATGATGGAAGTTATGACAGAAGG
CTTTTTGGATTCAAGAAAAGGAGTAGAGTAGAGAAGCTGTTGTTATCGTT
CAAGATTTGCTGCAGAAAGTTTGGTTTTGAGGTACCTTTTATTTTACAAT
TTTCTTCTGGCTTAAGGTTTAAAATCTCCCCTTCTAAATATAGCTGTAGG
CAAAAATTTAGAGACAACTTTCTGCCTTTGTGGTTTTTTATTCCGGCTGA
AAGCGTGGGGTAAATCATCAAAGAATTGACGCACTAGATCCGGAAATATA
GTATTGTATTGGAATTAGAATTTATGTCTCATTCATCTTAAAAACTTTAC
CAGGACGTTGGCAACACGCATATCTCAAAGAGAACTCTACTAGAAAAGGA
TTTATTCAGCTAATGACACCTAAAGCGGGCTGTAAACATATTTTCAAATA
TTAATTTAGAAGGTGATTCCTTGTAACCAATTTTTCAGTNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAGTACTCTTGTCTCCCGAATAGACGCCCCCCCCGCTAATAGCTAA
GAGAAAAAATCCACCCCGCTCTTATAAAGACCCTCCCCACTAATTAAATT
CGAATAATATTACCCCTTCTTATTCCACCTCCTCCCACTTATTAGAATTT
GGAAAATTTTCCTACCCCCTGCTTATTCGGACCCCCCCTGTCTATTCGGG
AAACAAGAGTATATGAGCTATACAGAATTTAAAGTACTTGAAAGTAATGC
GATGTGAAAGTTTTTGTTTTTTAAACAAAGTATTGTGAATATAGTATAAG
AAAACCCTTTGGTATGAACGGTGTTTGGGATATCAACTTTAACACTCAAA
ATTGATTTCAAAGATCAACAAATACGCCGAAGTCTCCAAAAGAGTTTTAA
TTCTATTGTGGTCTGTGTTTATGTTCCACAATGAGTTAATTAAGTTTAAG
GGGGTTTACCAATTTTTATAAAGTCAAGTCACCAGTTTCCATGTTTTCTT
TTTCCTGCTTATATATTCCTTTTTAGGTCATAGAGTATTCCTGATCTCTT
TGGGAAACGATGTATGATTGATATATCAATTTTATTTCAGGTTGTAAAAA
GAGTTCTTCAAAGCGAAAGAACTCTGGAAACCTCACTTCGTGCTCACAAC
TGGACAGCTTGCTCACACTATGTTTGAGATATAAACTGGAGCTTCAAGCT
AAAATTCACTTGGCGATTTGATACGAAACCAGCTGGCAACACCATTGTTT
CAACGTCGATCCTGCGTAAAGAGTCAATCCTCAAAGTACAAATTTTCATT
TTATATGGAATGTGTGGTAAAACATTTGTAGATCTTCGGCCCAACAAATT
ATTCTGTTCTTGCCTCGACGCTTTTCTCCTACAAAACCTTAGAATTGCAA
CGTACACTTGCAGAGACTTGAAAAGCGTATTTATAGCTTTAGAGTTCCAA
TTAATTACTACACATCTCATTATACACCCCTGTCTCACAGCCCCGGTGGA
ACTTTTTTCCTCAGTTGGGATAAAAACTCCCATTAAAATCCGAATATCCG
GATATAAATTCTGTTGTTCCAAGAAGAATTCAGTGGGATTTCGAATGGGG
ATGAAAACAAAGTCAATTTATCAGTGGGGCTGAATATACAGGGTATTTTC
CCACTGGGGACAAAATCTTTCCCAAATTTTCCAGAGGGGCTGGGGTCCCA
GCGGGTCTATGACACAGGGGTGTTATTATCAACAGGTGTCATTCAAATTC
TTTGAAAACTAAACACTGTACAAAGAGTACGAATCTCTTGACCATGCAAG
AAGTATTATCCCTGTCTGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038304-exon-sc0001822-1575043694:24451..24581 | TCONS_00038304-exon-sc0001822-1575043694:24451..24581 | Clytia hemisphaerica | exon |
| TCONS_00038304-exon-sc0001822-1575043694:21962..22691 | TCONS_00038304-exon-sc0001822-1575043694:21962..22691 | Clytia hemisphaerica | exon |
| TCONS_00038304-exon-sc0001822-1510915933:24451..24581 | TCONS_00038304-exon-sc0001822-1510915933:24451..24581 | Clytia hemisphaerica | exon |
| TCONS_00038304-exon-sc0001822-1510915933:21962..22691 | TCONS_00038304-exon-sc0001822-1510915933:21962..22691 | Clytia hemisphaerica | exon |
| TCONS_00038304-exon-sc0001822-1491911889:24451..24581 | TCONS_00038304-exon-sc0001822-1491911889:24451..24581 | Clytia hemisphaerica | exon |
| TCONS_00038304-exon-sc0001822-1491911889:21962..22691 | TCONS_00038304-exon-sc0001822-1491911889:21962..22691 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001822 | supercontig | sc0001822:21962..24581 - |
Blast
The following BLAST results are available for this feature:
|
