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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038300 ID=TCONS_00038300|Name=TCONS_00038300|organism=Clytia hemisphaerica|type=transcript|length=1682bp
GTGtctcttgcaaatcattatctAATGTAATCAAATGGTGCCAAACTGAT
CACACTGGGTCACACAGCAGGGCGTATTTACAGTGCATTTGTatggagaa
aacctttttgcAGAGTTCAACATTCTGAATGTGTTGATGAAACAACCATT
CCATCCATATATTCAGCTGAGACATACGTAATATTTGGATCACACTGGGT
CACACAGCAGGGCGTACTTACAGTGCACTTGTatggagaaaacctttttg
cAGAGTTCAACATTCTGAATGTGCTGATGAaacgggacaagctggagttt
ttacaagctcttatgtgatttggttggtcgttaagatgtaataaaaacaa
tcttattactttttctaaagaacgcgtcatttctattactttaaatgacc
aattagtgaagtatcttataaaaactccagctcatcccgatGAAACAACC
ATTCCATCCATATATTCAGCTGAGACATACGTAATATTTGGATCACACTG
GGTCACACAGCAGGACGTATTTACAGTGCACTTGtatcgaaaaaactttt
ttccagaGTTCAACATTCTGAATGTGCTGATGAAACAACCATTCCATCCA
TATATTCAGCTGAGACATACGTAATATTAGGTAAGAACTTGTTTATTTAC
GTCCACCAGGACTTCCTATAAAATACATTTCTGCCAGTGATGAATTGTCT
TAAATGTATTTCTAAAATCATCTTAAACAAATTTGcctcttgcaaatcat
tatctAATGTAAAGTTACCAAATTGTAAGGGATTGATTAATCATATTCCC
AAAACTGTTCTATTTTTTGTTCAGAGCTTTTGATACGATGCCACAGAGAG
TAGatatcaattttcaattatttcatggctttctttcaaaataaacttcT
GAAGGAGGTATAAATTAATTGCTGAAAGGGCAATCATAGATCGATTTATa
ggggaaatttttattttcatcgtTTTTATGGCAAACTCATCTTGTTCcaa
aaattgctttgaaaaattgatggtttttttagcagatttctttcaaacaa
agATGGTACAGCCATAATAACACCTTCAACTATGAATGCAAAAGGGCATC
AACAGAGTTATCCAACCACGTTTGGGACCTGCAAATCAAAAACATACAAC
CAAAATTATCATGGGAGATTATCGACCACGCCCGCTCGTATGTCAACGGC
TTGGTAAACTGCAACCTCTGTCTCACAGAAAAATTTCACTTCATTACATC
AGAGCTTCATCTCGTACAAAAGATCAGAATTTATTTCCACAAGTCGCCAT
AACAACATAGATTTAATCTGAAGACCTTCAAATCGGTTCCCCCGGATgaa
tcataaattttattttcaatatgttttaatcattgtttttattacaGTTT
TATTACACAAATTATCcagtttttcaactttttacgtagaatttcaaatt
ttcaatcattactgTACATATGATTAGTGTGTAAGCACAAAACTCTGAGT
GATGTATTCTTTAACTTTTAATGGAAGATAACTTTTNTGCACAAATTATC
cagtttttcaactttttacgtagaatttcaaattttcaatcattactgTA
CATATGATTAGTGTGTAAGCACAAAACTCTGAGTGATGTATTCTTTAACT
TTTAatggaagataacttttaaaatatcgATG Run BLAST on NCBI transcript from alignment at sc0001822:10012..12359- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038300 ID=TCONS_00038300|Name=TCONS_00038300|organism=Clytia hemisphaerica|type=transcript|length=2348bp|location=Sequence derived from alignment at sc0001822:10012..12359- (Clytia hemisphaerica)
GTGTCTCTTGCAAATCATTATCTAATGTAATCAAATGGTGCCAAACTGTA
AGTGATTAGTTAATCATATCTTGAGCTTACTAGATTCAAACTCTTTAAAA
AATCATTGAACGTCGGACTTGGTGATTTTGTAAATTTGTTTAAAGCAAAT
AATTATCCATTTTAGGATCACACTGGGTCACACAGCAGGGCGTATTTACA
GTGCATTTGTATGGAGAAAACCTTTTTGCAGAGTTCAACATTCTGAATGT
GTTGATGAAACAACCATTCCATCCATATATTCAGCTGAGACATACGTAAT
ATTTGGTAAGGAAAGGTTTATTTTTTTCAACCAGTACTTCCTATAGAATA
CATGTCTGTCAGTGATGAGTAGGTTTTATCATATTTCATAACTCATCTTA
GACAAATTTGTAAAGGGTTCAGTGTCTCTTGCAAATCATTATCTAATGTA
ATCAAATGGTGCCAAACTGTAAATGATTAGTTAATCATATCTTGAGCTTA
CTAGATTCAAACTCTTTAAAAAATTATTGAACGTCGGATTTAGTGATTTT
GTAAATTTGTTTAAAGCAAATAATTATCCATTTAAGGATCACACTGGGTC
ACACAGCAGGGCGTACTTACAGTGCACTTGTATGGAGAAAACCTTTTTGC
AGAGTTCAACATTCTGAATGTGCTGATGAAACGGGACAAGCTGGAGTTTT
TACAAGCTCTTATGTGATTTGGTTGGTCGTTAAGATGTAATAAAAACAAT
CTTATTACTTTTTCTAAAGAACGCGTCATTTCTATTACTTTAAATGACCA
ATTAGTGAAGTATCTTATAAAAACTCCAGCTCATCCCGATGAAACAACCA
TTCCATCCATATATTCAGCTGAGACATACGTAATATTTGGTAAGGAAAGG
TTTATTTTTGTCAACCAGTACTTCCTATAAAATACATGTCTGTCAGTGAT
GAGTAGGTTTNNNNNNNNNNNNNNNNATTTGTAAAGGGTGCAGTGTCTCT
TGCAAATCATTATCTAATGTAATCAAATGGTGCCAAACTGTAAGTGATTA
GTTAATCATATCTTGAGTTTACTAGGTTCAAACTCTTGAAAAATTATTGA
ACGTCGGACTTAGTGATTTTGTAAATTTGTTTAAAGCAAATAACTATTCA
TTTTAGGATCACACTGGGTCACACAGCAGGACGTATTTACAGTGCACTTG
TATCGAAAAAACTTTTTTCCAGAGTTCAACATTCTGAATGTGCTGATGAA
ACAACCATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGGTAA
GAACTTGTTTATTTACGTCCACCAGGACTTCCTATAAAATACATTTCTGC
CAGTGATGAATTGTCTTAAATGTATTTCTAAAATCATCTTAAACAAATTT
GCCTCTTGCAAATCATTATCTAATGTAAAGTTACCAAATTGTAAGGGATT
GATTAATCATATTCCCAAAACTGTTCTATTTTTTGTTCAGAGCTTTTGAT
ACGATGCCACAGAGAGTAGATATCAATTTTCAATTATTTCATGGCTTTCT
TTCAAAATAAACTTCTGAAGGAGGTATAAATTAATTGCTGAAAGGGCAAT
CATAGATCGATTTATAGGGGAAATTTTTATTTTCATCGTTTTTATGGCAA
ACTCATCTTGTTCCAAAAATTGCTTTGAAAAATTGATGGTTTTTTTAGCA
GATTTCTTTCAAACAAAGATGGTACAGCCATAATAACACCTTCAACTATG
AATGCAAAAGGGCATCAACAGAGTTATCCAACCACGTTTGGGACCTGCAA
ATCAAAAACATACAACCAAAATTATCATGGGAGATTATCGACCACGCCCG
CTCGTATGTCAACGGCTTGGTAAACTGCAACCTCTGTCTCACAGAAAAAT
TTCACTTCATTACATCAGAGCTTCATCTCGTACAAAAGATCAGAATTTAT
TTCCACAAGTCGCCATAACAACATAGATTTAATCTGAAGACCTTCAAATC
GGTTCCCCCGGATGAATCATAAATTTTATTTTCAATATGTTTTAATCATT
GTTTTTATTACAGTTTTATTACACAAATTATCCAGTTTTTCAACTTTTTA
CGTAGAATTTCAAATTTTCAATCATTACTGTACATATGATTAGTGTGTAA
GCACAAAACTCTGAGTGATGTATTCTTTAACTTTTAATGGAAGATAACTT
TTNTGCACAAATTATCCAGTTTTTCAACTTTTTACGTAGAATTTCAAATT
TTCAATCATTACTGTACATATGATTAGTGTGTAAGCACAAAACTCTGAGT
GATGTATTCTTTAACTTTTAATGGAAGATAACTTTTAAAATATCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038300-exon-sc0001822-1575043694:12313..12359 | TCONS_00038300-exon-sc0001822-1575043694:12313..12359 | Clytia hemisphaerica | exon |
| TCONS_00038300-exon-sc0001822-1575043694:12055..12194 | TCONS_00038300-exon-sc0001822-1575043694:12055..12194 | Clytia hemisphaerica | exon |
| TCONS_00038300-exon-sc0001822-1575043694:11471..11773 | TCONS_00038300-exon-sc0001822-1575043694:11471..11773 | Clytia hemisphaerica | exon |
| TCONS_00038300-exon-sc0001822-1575043694:10012..11203 | TCONS_00038300-exon-sc0001822-1575043694:10012..11203 | Clytia hemisphaerica | exon |
| TCONS_00038300-exon-sc0001822-1510915933:12313..12359 | TCONS_00038300-exon-sc0001822-1510915933:12313..12359 | Clytia hemisphaerica | exon |
| TCONS_00038300-exon-sc0001822-1510915933:12055..12194 | TCONS_00038300-exon-sc0001822-1510915933:12055..12194 | Clytia hemisphaerica | exon |
| TCONS_00038300-exon-sc0001822-1510915933:11471..11773 | TCONS_00038300-exon-sc0001822-1510915933:11471..11773 | Clytia hemisphaerica | exon |
| TCONS_00038300-exon-sc0001822-1510915933:10012..11203 | TCONS_00038300-exon-sc0001822-1510915933:10012..11203 | Clytia hemisphaerica | exon |
| TCONS_00038300-exon-sc0001822-1491911889:12313..12359 | TCONS_00038300-exon-sc0001822-1491911889:12313..12359 | Clytia hemisphaerica | exon |
| TCONS_00038300-exon-sc0001822-1491911889:12055..12194 | TCONS_00038300-exon-sc0001822-1491911889:12055..12194 | Clytia hemisphaerica | exon |
| TCONS_00038300-exon-sc0001822-1491911889:11471..11773 | TCONS_00038300-exon-sc0001822-1491911889:11471..11773 | Clytia hemisphaerica | exon |
| TCONS_00038300-exon-sc0001822-1491911889:10012..11203 | TCONS_00038300-exon-sc0001822-1491911889:10012..11203 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001822 | supercontig | sc0001822:10012..12359 - |
Blast
The following BLAST results are available for this feature:
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