|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038298 ID=TCONS_00038298|Name=TCONS_00038298|organism=Clytia hemisphaerica|type=transcript|length=1443bp
ATTAGTTAATCATATCTTGAGCTTACTAGATTCAAACtctttaaaaaatc
attgaacgTCGGACTTGgtgattttgtaaatttgtttaaagCAAATAATT
ATCCATTTTAGGATCACACTGGGTCACACAGCAGGGCGTATTTACAGTGC
ATTTGTatggagaaaacctttttgcAGAGTTCAACATTCTGAATGTGTTG
ATGAAACAACCATTCCATCCATATATTCAGCTGAGACATACGTAATATTT
GGATCACACTGGGTCACACAGCAGGACGTATTTACAGTGCACTTGtatcg
aaaaaacttttttccagaGTTCAACATTCTGAATGTGCTGATGAAACAAC
CATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGGTAAGAACT
TGTTTATTTACGTCCACCAGGACTTCCTATAAAATACATTTCTGCCAGTG
ATGAATTGTCTTAAATGTATTTCTAAAATCATCTTAAACAAATTTGcctc
ttgcaaatcattatctAATGTAAAGTTACCAAATTGTAAGGGATTGATTA
ATCATATTCCCAAAACTGTTCTATTTTTTGTTCAGAGCTTTTGATACGAT
GCCACAGAGAGTAGatatcaattttcaattatttcatggctttctttcaa
aataaacttcTGAAGGAGGTATAAATTAATTGCTGAAAGGGCAATCATAG
ATCGATTTATaggggaaatttttattttcatcgtTTTTATGGCAAACTCA
TCTTGTTCcaaaaattgctttgaaaaattgatggtttttttagcagattt
ctttcaaacaaagATGGTACAGCCATAATAACACCTTCAACTATGAATGC
AAAAGGGCATCAACAGAGTTATCCAACCACGTTTGGGACCTGCAAATCAA
AAACATACAACCAAAATTATCATGGGAGATTATCGACCACGCCCGCTCGT
ATGTCAACGGCTTGGTAAACTGCAACCTCTGTCTCACAGAAAAATTTCAC
TTCATTACATCAGAGCTTCATCTCGTACAAAAGATCAGAATTTATTTCCA
CAAGTCGCCATAACAACATAGATTTAATCTGAAGACCTTCAAATCGGTTC
CCCCGGATgaatcataaattttattttcaatatgttttaatcattgtttt
tattacaGTTTTATTACACAAATTATCcagtttttcaactttttacgtag
aatttcaaattttcaatcattactgTACATATGATTAGTGTGTAAGCACA
AAACTCTGAGTGATGTATTCTTTAACTTTTAATGGAAGATAACTTTTNTG
CACAAATTATCcagtttttcaactttttacgtagaatttcaaattttcaa
tcattactgTACATATGATTAGTGTGTAAGCACAAAACTCTGAGTGATGT
ATTCTTTAACTTTTAatggaagataacttttaaaatatcgATG Run BLAST on NCBI transcript from alignment at sc0001822:10012..12305- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038298 ID=TCONS_00038298|Name=TCONS_00038298|organism=Clytia hemisphaerica|type=transcript|length=2294bp|location=Sequence derived from alignment at sc0001822:10012..12305- (Clytia hemisphaerica)
ATTAGTTAATCATATCTTGAGCTTACTAGATTCAAACTCTTTAAAAAATC
ATTGAACGTCGGACTTGGTGATTTTGTAAATTTGTTTAAAGCAAATAATT
ATCCATTTTAGGATCACACTGGGTCACACAGCAGGGCGTATTTACAGTGC
ATTTGTATGGAGAAAACCTTTTTGCAGAGTTCAACATTCTGAATGTGTTG
ATGAAACAACCATTCCATCCATATATTCAGCTGAGACATACGTAATATTT
GGTAAGGAAAGGTTTATTTTTTTCAACCAGTACTTCCTATAGAATACATG
TCTGTCAGTGATGAGTAGGTTTTATCATATTTCATAACTCATCTTAGACA
AATTTGTAAAGGGTTCAGTGTCTCTTGCAAATCATTATCTAATGTAATCA
AATGGTGCCAAACTGTAAATGATTAGTTAATCATATCTTGAGCTTACTAG
ATTCAAACTCTTTAAAAAATTATTGAACGTCGGATTTAGTGATTTTGTAA
ATTTGTTTAAAGCAAATAATTATCCATTTAAGGATCACACTGGGTCACAC
AGCAGGGCGTACTTACAGTGCACTTGTATGGAGAAAACCTTTTTGCAGAG
TTCAACATTCTGAATGTGCTGATGAAACGGGACAAGCTGGAGTTTTTACA
AGCTCTTATGTGATTTGGTTGGTCGTTAAGATGTAATAAAAACAATCTTA
TTACTTTTTCTAAAGAACGCGTCATTTCTATTACTTTAAATGACCAATTA
GTGAAGTATCTTATAAAAACTCCAGCTCATCCCGATGAAACAACCATTCC
ATCCATATATTCAGCTGAGACATACGTAATATTTGGTAAGGAAAGGTTTA
TTTTTGTCAACCAGTACTTCCTATAAAATACATGTCTGTCAGTGATGAGT
AGGTTTNNNNNNNNNNNNNNNNATTTGTAAAGGGTGCAGTGTCTCTTGCA
AATCATTATCTAATGTAATCAAATGGTGCCAAACTGTAAGTGATTAGTTA
ATCATATCTTGAGTTTACTAGGTTCAAACTCTTGAAAAATTATTGAACGT
CGGACTTAGTGATTTTGTAAATTTGTTTAAAGCAAATAACTATTCATTTT
AGGATCACACTGGGTCACACAGCAGGACGTATTTACAGTGCACTTGTATC
GAAAAAACTTTTTTCCAGAGTTCAACATTCTGAATGTGCTGATGAAACAA
CCATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGGTAAGAAC
TTGTTTATTTACGTCCACCAGGACTTCCTATAAAATACATTTCTGCCAGT
GATGAATTGTCTTAAATGTATTTCTAAAATCATCTTAAACAAATTTGCCT
CTTGCAAATCATTATCTAATGTAAAGTTACCAAATTGTAAGGGATTGATT
AATCATATTCCCAAAACTGTTCTATTTTTTGTTCAGAGCTTTTGATACGA
TGCCACAGAGAGTAGATATCAATTTTCAATTATTTCATGGCTTTCTTTCA
AAATAAACTTCTGAAGGAGGTATAAATTAATTGCTGAAAGGGCAATCATA
GATCGATTTATAGGGGAAATTTTTATTTTCATCGTTTTTATGGCAAACTC
ATCTTGTTCCAAAAATTGCTTTGAAAAATTGATGGTTTTTTTAGCAGATT
TCTTTCAAACAAAGATGGTACAGCCATAATAACACCTTCAACTATGAATG
CAAAAGGGCATCAACAGAGTTATCCAACCACGTTTGGGACCTGCAAATCA
AAAACATACAACCAAAATTATCATGGGAGATTATCGACCACGCCCGCTCG
TATGTCAACGGCTTGGTAAACTGCAACCTCTGTCTCACAGAAAAATTTCA
CTTCATTACATCAGAGCTTCATCTCGTACAAAAGATCAGAATTTATTTCC
ACAAGTCGCCATAACAACATAGATTTAATCTGAAGACCTTCAAATCGGTT
CCCCCGGATGAATCATAAATTTTATTTTCAATATGTTTTAATCATTGTTT
TTATTACAGTTTTATTACACAAATTATCCAGTTTTTCAACTTTTTACGTA
GAATTTCAAATTTTCAATCATTACTGTACATATGATTAGTGTGTAAGCAC
AAAACTCTGAGTGATGTATTCTTTAACTTTTAATGGAAGATAACTTTTNT
GCACAAATTATCCAGTTTTTCAACTTTTTACGTAGAATTTCAAATTTTCA
ATCATTACTGTACATATGATTAGTGTGTAAGCACAAAACTCTGAGTGATG
TATTCTTTAACTTTTAATGGAAGATAACTTTTAAAATATCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038298-exon-sc0001822-1575043694:12055..12305 | TCONS_00038298-exon-sc0001822-1575043694:12055..12305 | Clytia hemisphaerica | exon |
| TCONS_00038298-exon-sc0001822-1575043694:10012..11203 | TCONS_00038298-exon-sc0001822-1575043694:10012..11203 | Clytia hemisphaerica | exon |
| TCONS_00038298-exon-sc0001822-1510915933:12055..12305 | TCONS_00038298-exon-sc0001822-1510915933:12055..12305 | Clytia hemisphaerica | exon |
| TCONS_00038298-exon-sc0001822-1510915933:10012..11203 | TCONS_00038298-exon-sc0001822-1510915933:10012..11203 | Clytia hemisphaerica | exon |
| TCONS_00038298-exon-sc0001822-1491911889:12055..12305 | TCONS_00038298-exon-sc0001822-1491911889:12055..12305 | Clytia hemisphaerica | exon |
| TCONS_00038298-exon-sc0001822-1491911889:10012..11203 | TCONS_00038298-exon-sc0001822-1491911889:10012..11203 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001822 | supercontig | sc0001822:10012..12305 - |
Blast
The following BLAST results are available for this feature:
|
