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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038297 ID=TCONS_00038297|Name=TCONS_00038297|organism=Clytia hemisphaerica|type=transcript|length=838bp
atGAAACAACCATTCCATCCATATATTCAGCTGAGACATACGTAATATTT
GGATCACACTGGGTCACACAGCAGGACGTATTTACAGTGCACTTGtatcg
aaaaaacttttttccagaGTTCAACATTCTGAATGTGCTGATGAAACAAC
CATTCCATCCATATATTCAGCTGAGACATACGTAATATTAGatttctttc
aaacaaagATGGTACAGCCATAATAACACCTTCAACTATGAATGCAAAAG
GGCATCAACAGAGTTATCCAACCACGTTTGGGACCTGCAAATCAAAAACA
TACAACCAAAATTATCATGGGAGATTATCGACCACGCCCGCTCGTATGTC
AACGGCTTGGTAAACTGCAACCTCTGTCTCACAGAAAAATTTCACTTCAT
TACATCAGAGCTTCATCTCGTACAAAAGATCAGAATTTATTTCCACAAGT
CGCCATAACAACATAGATTTAATCTGAAGACCTTCAAATCGGTTCCCCCG
GATgaatcataaattttattttcaatatgttttaatcattgtttttatta
caGTTTTATTACACAAATTATCcagtttttcaactttttacgtagaattt
caaattttcaatcattactgTACATATGATTAGTGTGTAAGCACAAAACT
CTGAGTGATGTATTCTTTAACTTTTAATGGAAGATAACTTTTNTGCACAA
ATTATCcagtttttcaactttttacgtagaatttcaaattttcaatcatt
actgTACATATGATTAGTGTGTAAGCACAAAACTCTGAGTGATGTATTCT
TTAACTTTTAatggaagataacttttaaaatatcgATG Run BLAST on NCBI transcript from alignment at sc0001822:10012..11521- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038297 ID=TCONS_00038297|Name=TCONS_00038297|organism=Clytia hemisphaerica|type=transcript|length=1510bp|location=Sequence derived from alignment at sc0001822:10012..11521- (Clytia hemisphaerica)
ATGAAACAACCATTCCATCCATATATTCAGCTGAGACATACGTAATATTT
GGTAAGGAAAGGTTTATTTTTGTCAACCAGTACTTCCTATAAAATACATG
TCTGTCAGTGATGAGTAGGTTTNNNNNNNNNNNNNNNNATTTGTAAAGGG
TGCAGTGTCTCTTGCAAATCATTATCTAATGTAATCAAATGGTGCCAAAC
TGTAAGTGATTAGTTAATCATATCTTGAGTTTACTAGGTTCAAACTCTTG
AAAAATTATTGAACGTCGGACTTAGTGATTTTGTAAATTTGTTTAAAGCA
AATAACTATTCATTTTAGGATCACACTGGGTCACACAGCAGGACGTATTT
ACAGTGCACTTGTATCGAAAAAACTTTTTTCCAGAGTTCAACATTCTGAA
TGTGCTGATGAAACAACCATTCCATCCATATATTCAGCTGAGACATACGT
AATATTAGGTAAGAACTTGTTTATTTACGTCCACCAGGACTTCCTATAAA
ATACATTTCTGCCAGTGATGAATTGTCTTAAATGTATTTCTAAAATCATC
TTAAACAAATTTGCCTCTTGCAAATCATTATCTAATGTAAAGTTACCAAA
TTGTAAGGGATTGATTAATCATATTCCCAAAACTGTTCTATTTTTTGTTC
AGAGCTTTTGATACGATGCCACAGAGAGTAGATATCAATTTTCAATTATT
TCATGGCTTTCTTTCAAAATAAACTTCTGAAGGAGGTATAAATTAATTGC
TGAAAGGGCAATCATAGATCGATTTATAGGGGAAATTTTTATTTTCATCG
TTTTTATGGCAAACTCATCTTGTTCCAAAAATTGCTTTGAAAAATTGATG
GTTTTTTTAGCAGATTTCTTTCAAACAAAGATGGTACAGCCATAATAACA
CCTTCAACTATGAATGCAAAAGGGCATCAACAGAGTTATCCAACCACGTT
TGGGACCTGCAAATCAAAAACATACAACCAAAATTATCATGGGAGATTAT
CGACCACGCCCGCTCGTATGTCAACGGCTTGGTAAACTGCAACCTCTGTC
TCACAGAAAAATTTCACTTCATTACATCAGAGCTTCATCTCGTACAAAAG
ATCAGAATTTATTTCCACAAGTCGCCATAACAACATAGATTTAATCTGAA
GACCTTCAAATCGGTTCCCCCGGATGAATCATAAATTTTATTTTCAATAT
GTTTTAATCATTGTTTTTATTACAGTTTTATTACACAAATTATCCAGTTT
TTCAACTTTTTACGTAGAATTTCAAATTTTCAATCATTACTGTACATATG
ATTAGTGTGTAAGCACAAAACTCTGAGTGATGTATTCTTTAACTTTTAAT
GGAAGATAACTTTTNTGCACAAATTATCCAGTTTTTCAACTTTTTACGTA
GAATTTCAAATTTTCAATCATTACTGTACATATGATTAGTGTGTAAGCAC
AAAACTCTGAGTGATGTATTCTTTAACTTTTAATGGAAGATAACTTTTAA
AATATCGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038297-exon-sc0001822-1575043694:11471..11521 | TCONS_00038297-exon-sc0001822-1575043694:11471..11521 | Clytia hemisphaerica | exon |
| TCONS_00038297-exon-sc0001822-1575043694:11064..11203 | TCONS_00038297-exon-sc0001822-1575043694:11064..11203 | Clytia hemisphaerica | exon |
| TCONS_00038297-exon-sc0001822-1575043694:10012..10658 | TCONS_00038297-exon-sc0001822-1575043694:10012..10658 | Clytia hemisphaerica | exon |
| TCONS_00038297-exon-sc0001822-1510915933:11471..11521 | TCONS_00038297-exon-sc0001822-1510915933:11471..11521 | Clytia hemisphaerica | exon |
| TCONS_00038297-exon-sc0001822-1510915933:11064..11203 | TCONS_00038297-exon-sc0001822-1510915933:11064..11203 | Clytia hemisphaerica | exon |
| TCONS_00038297-exon-sc0001822-1510915933:10012..10658 | TCONS_00038297-exon-sc0001822-1510915933:10012..10658 | Clytia hemisphaerica | exon |
| TCONS_00038297-exon-sc0001822-1491911889:11471..11521 | TCONS_00038297-exon-sc0001822-1491911889:11471..11521 | Clytia hemisphaerica | exon |
| TCONS_00038297-exon-sc0001822-1491911889:11064..11203 | TCONS_00038297-exon-sc0001822-1491911889:11064..11203 | Clytia hemisphaerica | exon |
| TCONS_00038297-exon-sc0001822-1491911889:10012..10658 | TCONS_00038297-exon-sc0001822-1491911889:10012..10658 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001822 | supercontig | sc0001822:10012..11521 - |
Blast
The following BLAST results are available for this feature:
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