TCONS_00038293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038293
Unique NameTCONS_00038293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length384

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038293 ID=TCONS_00038293|Name=TCONS_00038293|organism=Clytia hemisphaerica|type=transcript|length=384bp
TGACGTTTATAGAGAAGGCCATTGGGTTTTTGTCGCAAGACTAAATTCAG
ACCTCTGTCCTATTTCCAATTTGGAAAGGTACTTAAAAATTGCAGGAATA
GAAAATAATTCTGATAAATTTGTTTTCAGAGCCGTATCCAAAGGACGTCG
TTGTGTTGAAATGTTGAGAAAGGCGGACAGCCCAATTTCCTACACTTCGG
TGAGAGAGGACATTAAACAGGTCTTGAAACGTATTGGCTTAAACGAGAAA
GAGTACCGTGTTCACAGCCTCGGATCAGGCGGTGCCTCTGCGGCAGCCAA
CCTGGGCGTGCCAGACAGGCTTATCATGAAACACGGAAGGTGGAAGTCTA
TCGGAGTGAAAAATAGATATATTTCGGAAGAcct
Run BLAST on NCBI

protein sequence of TCONS_00038293-protein

>TCONS_00038293-protein ID=TCONS_00038293-protein|Name=TCONS_00038293-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
DVYREGHWVFVARLNSDLCPISNLERYLKIAGIENNSDKFVFRAVSKGRR
CVEMLRKADSPISYTSVREDIKQVLKRIGLNEKEYRVHSLGSGGASAAAN
LGVPDRLIMKHGRWKSIGVKNRYISED
Run BLAST on NCBI

transcript from alignment at sc0001820:39101..39484

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038293 ID=TCONS_00038293|Name=TCONS_00038293|organism=Clytia hemisphaerica|type=transcript|length=384bp|location=Sequence derived from alignment at sc0001820:39101..39484 (Clytia hemisphaerica)
aggTCTTCCGAAATATATCTATTTTTCACTCCGATAGACTTCCACCTTCC
GTGTTTCATGATAAGCCTGTCTGGCACGCCCAGGTTGGCTGCCGCAGAGG
CACCGCCTGATCCGAGGCTGTGAACACGGTACTCTTTCTCGTTTAAGCCA
ATACGTTTCAAGACCTGTTTAATGTCCTCTCTCACCGAAGTGTAGGAAAT
TGGGCTGTCCGCCTTTCTCAACATTTCAACACAACGACGTCCTTTGGATA
CGGCTCTGAAAACAAATTTATCAGAATTATTTTCTATTCCTGCAATTTTT
AAGTACCTTTCCAAATTGGAAATAGGACAGAGGTCTGAATTTAGTCTTGC
GACAAAAACCCAATGGCCTTCTCTATAAACGTCA

Coding sequence (CDS) from alignment at sc0001820:39101..39484

>TCONS_00038293 ID=TCONS_00038293|Name=TCONS_00038293|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at sc0001820:39101..39484 (Clytia hemisphaerica)
gTCTTCCGAAATATATCTATTTTTCACTCCGATAGACTTCCACCTTCCGT
GTTTCATGATAAGCCTGTCTGGCACGCCCAGGTTGGCTGCCGCAGAGGCA
CCGCCTGATCCGAGGCTGTGAACACGGTACTCTTTCTCGTTTAAGCCAAT
ACGTTTCAAGACCTGTTTAATGTCCTCTCTCACCGAAGTGTAGGAAATTG
GGCTGTCCGCCTTTCTCAACATTTCAACACAACGACGTCCTTTGGATACG
GCTCTGAAAACAAATTTATCAGAATTATTTTCTATTCCTGCAATTTTTAA
GTACCTTTCCAAATTGGAAATAGGACAGAGGTCTGAATTTAGTCTTGCGA
CAAAAACCCAATGGCCTTCTCTATAAACGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022910XLOC_022910Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038293-proteinTCONS_00038293-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038293-exon-sc0001820-1491911889:39101..39484TCONS_00038293-exon-sc0001820-1491911889:39101..39484Clytia hemisphaericaexon
TCONS_00038293-exon-sc0001820-1510915933:39101..39484TCONS_00038293-exon-sc0001820-1510915933:39101..39484Clytia hemisphaericaexon
TCONS_00038293-exon-sc0001820-1575043694:39101..39484TCONS_00038293-exon-sc0001820-1575043694:39101..39484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001820supercontigsc0001820:39101..39484 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.96733	3.57539	0	0.22457	0	0.216039	0	0.732028	0.341673	0.211609	0.616178	0.270034	0	0.298911	0.142592	0	0.456566	0.155988	0	0	0.392022	0	2.43355	2.32488	0.490388	0.388517	0	0	2.45569	2.05494
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
IPR002104Integrase_catalytic
IPR011010DNA_brk_join_enz
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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