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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038292 ID=TCONS_00038292|Name=TCONS_00038292|organism=Clytia hemisphaerica|type=transcript|length=1062bp
aaacaGATGGGTGATAAGAAACCTAAAGAGGTAATTGAAAAGCTGGTGAA
AAGGATTCGAACAGGAAACATCAATGCATTATTCATCGATGAGTGTTGGC
TTACCAGTAATCTATTGGAAAAAATGATAATGAAAGTCAAAAAACACGTT
GATGTGATTTGGATTGCATCTGATGGATTGGGTCATCTCGAAATTTTATC
AGGTGGTGAAGAATTTTCGGTGTATAACGATTTCATGAAATTCGAACTTG
ACGTGAATTTAAGAAACTGTGAAAGCATAGTAAAAGAGGCATTAAGCTTT
GAAGAAAGAGACAGTTCGACATATAAAGAGGGTTTAGTACTTCCACCACC
GAACCAGCCTGATGGAAAGCAACCCTACCATTCCAAATCATTTGAAGATG
CCATCAAAGAAATGAGAAAGATCACGAACGATGGAGTGCTAGTGATATAT
GATATTCGATACGAGGATGATGATTTTCAAACATTGAACAAGATGAAATT
GAAATGGAAAAGGTATGGAAAACTTAATAACGATTTCAAGGAAGGTGAAA
GTCCATATCAATATCTCGTAGACGGAGACATTTTATTGATTGAGGACTAT
AGACTAATTTCCGGTTTCGACTGGAAGAACGTCATTATCATCATCACGGA
TGGAAACACGGGTAAAGTTGATTACCATCCATGTAACTTCATCATGAGAT
GCATGATGAATCTCATGATTGTTGACAATAAAGAAGCAGACATTTTTCCC
GATGAAACCGATACTGAAGATTCTTCAGATGACACCGATACTGAAGATTC
TTCAGATGACACCGATACTGAAGATTCTTCAGATGATTAAACTTAAAATA
TCAATACTCAAATAATTAATCAATATCGTTGAAATTAGTTAGTACATAGA
ATTTTCGAGATAAttatttcagtttttgtttGGAGTCACGaattgcataa
tttttaaagcagCATCGTTTTTCTTATTAGTTTACTCAAGCTCTAAAATG
TGCAACTTTTATGCAACCTTTCAGAAATATGAATGGAAAAGAGCTTCAAG
GTTTTAACCCTA Run BLAST on NCBI protein sequence of TCONS_00038292-protein >TCONS_00038292-protein ID=TCONS_00038292-protein|Name=TCONS_00038292-protein|organism=Clytia hemisphaerica|type=polypeptide|length=279bp
KQMGDKKPKEVIEKLVKRIRTGNINALFIDECWLTSNLLEKMIMKVKKHV
DVIWIASDGLGHLEILSGGEEFSVYNDFMKFELDVNLRNCESIVKEALSF
EERDSSTYKEGLVLPPPNQPDGKQPYHSKSFEDAIKEMRKITNDGVLVIY
DIRYEDDDFQTLNKMKLKWKRYGKLNNDFKEGESPYQYLVDGDILLIEDY
RLISGFDWKNVIIIITDGNTGKVDYHPCNFIMRCMMNLMIVDNKEADIFP
DETDTEDSSDDTDTEDSSDDTDTEDSSDD Run BLAST on NCBI transcript from alignment at sc0001820:32131..33192 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038292 ID=TCONS_00038292|Name=TCONS_00038292|organism=Clytia hemisphaerica|type=transcript|length=1062bp|location=Sequence derived from alignment at sc0001820:32131..33192 (Clytia hemisphaerica)
TAGGGTTAAAACCTTGAAGCTCTTTTCCATTCATATTTCTGAAAGGTTGC
ATAAAAGTTGCACATTTTAGAGCTTGAGTAAACTAATAAGAAAAACGATG
ctgctttaaaaattatgcaattCGTGACTCCaaacaaaaactgaaataaT
TATCTCGAAAATTCTATGTACTAACTAATTTCAACGATATTGATTAATTA
TTTGAGTATTGATATTTTAAGTTTAATCATCTGAAGAATCTTCAGTATCG
GTGTCATCTGAAGAATCTTCAGTATCGGTGTCATCTGAAGAATCTTCAGT
ATCGGTTTCATCGGGAAAAATGTCTGCTTCTTTATTGTCAACAATCATGA
GATTCATCATGCATCTCATGATGAAGTTACATGGATGGTAATCAACTTTA
CCCGTGTTTCCATCCGTGATGATGATAATGACGTTCTTCCAGTCGAAACC
GGAAATTAGTCTATAGTCCTCAATCAATAAAATGTCTCCGTCTACGAGAT
ATTGATATGGACTTTCACCTTCCTTGAAATCGTTATTAAGTTTTCCATAC
CTTTTCCATTTCAATTTCATCTTGTTCAATGTTTGAAAATCATCATCCTC
GTATCGAATATCATATATCACTAGCACTCCATCGTTCGTGATCTTTCTCA
TTTCTTTGATGGCATCTTCAAATGATTTGGAATGGTAGGGTTGCTTTCCA
TCAGGCTGGTTCGGTGGTGGAAGTACTAAACCCTCTTTATATGTCGAACT
GTCTCTTTCTTCAAAGCTTAATGCCTCTTTTACTATGCTTTCACAGTTTC
TTAAATTCACGTCAAGTTCGAATTTCATGAAATCGTTATACACCGAAAAT
TCTTCACCACCTGATAAAATTTCGAGATGACCCAATCCATCAGATGCAAT
CCAAATCACATCAACGTGTTTTTTGACTTTCATTATCATTTTTTCCAATA
GATTACTGGTAAGCCAACACTCATCGATGAATAATGCATTGATGTTTCCT
GTTCGAATCCTTTTCACCAGCTTTTCAATTACCTCTTTAGGTTTCTTATC
ACCCATCtgttt Coding sequence (CDS) from alignment at sc0001820:32131..33192 >TCONS_00038292 ID=TCONS_00038292|Name=TCONS_00038292|organism=Clytia hemisphaerica|type=CDS|length=840bp|location=Sequence derived from alignment at sc0001820:32131..33192 (Clytia hemisphaerica)
TTAATCATCTGAAGAATCTTCAGTATCGGTGTCATCTGAAGAATCTTCAG
TATCGGTGTCATCTGAAGAATCTTCAGTATCGGTTTCATCGGGAAAAATG
TCTGCTTCTTTATTGTCAACAATCATGAGATTCATCATGCATCTCATGAT
GAAGTTACATGGATGGTAATCAACTTTACCCGTGTTTCCATCCGTGATGA
TGATAATGACGTTCTTCCAGTCGAAACCGGAAATTAGTCTATAGTCCTCA
ATCAATAAAATGTCTCCGTCTACGAGATATTGATATGGACTTTCACCTTC
CTTGAAATCGTTATTAAGTTTTCCATACCTTTTCCATTTCAATTTCATCT
TGTTCAATGTTTGAAAATCATCATCCTCGTATCGAATATCATATATCACT
AGCACTCCATCGTTCGTGATCTTTCTCATTTCTTTGATGGCATCTTCAAA
TGATTTGGAATGGTAGGGTTGCTTTCCATCAGGCTGGTTCGGTGGTGGAA
GTACTAAACCCTCTTTATATGTCGAACTGTCTCTTTCTTCAAAGCTTAAT
GCCTCTTTTACTATGCTTTCACAGTTTCTTAAATTCACGTCAAGTTCGAA
TTTCATGAAATCGTTATACACCGAAAATTCTTCACCACCTGATAAAATTT
CGAGATGACCCAATCCATCAGATGCAATCCAAATCACATCAACGTGTTTT
TTGACTTTCATTATCATTTTTTCCAATAGATTACTGGTAAGCCAACACTC
ATCGATGAATAATGCATTGATGTTTCCTGTTCGAATCCTTTTCACCAGCT
TTTCAATTACCTCTTTAGGTTTCTTATCACCCATCtgttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038292-exon-sc0001820-1491911889:32131..33192 | TCONS_00038292-exon-sc0001820-1491911889:32131..33192 | Clytia hemisphaerica | exon |
| TCONS_00038292-exon-sc0001820-1510915933:32131..33192 | TCONS_00038292-exon-sc0001820-1510915933:32131..33192 | Clytia hemisphaerica | exon |
| TCONS_00038292-exon-sc0001820-1575043694:32131..33192 | TCONS_00038292-exon-sc0001820-1575043694:32131..33192 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001820 | supercontig | sc0001820:32131..33192 . |
Blast
The following BLAST results are available for this feature:
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