TCONS_00038278 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038278
Unique NameTCONS_00038278
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038278 ID=TCONS_00038278|Name=TCONS_00038278|organism=Clytia hemisphaerica|type=transcript|length=572bp
AAAAACACTACATGCAAAATAAATCAAGTAACAATCCAAGCTATTAGTAG
GTCGCGTATACTCGAACAAAGGACACACGCTGTCATCATTCCTAAGAATG
ATGGAGATACGATTTCTGATGGTGACCCTTGCGACAACATCAATTTTGAC
ATAGATCCAGATAATTTACCATGCAGAGTTTTGATATCCTTGAATAAAGC
TTCTCTTTTTGATGCATTACCGAGGATCCTTGAAGAATGCGAAAAAAAAC
AACTGGTATCGATTACCATTCCTTTGGCTAACTTTGATGAAAGAATACTG
AAAATGGTTTTCGACCAAAGCTACGGAACTGACAAATCGACCGAGATCTT
TCGTTTTGCTTCACCAAGGCTGTCGAGGACAGACGCAGAAAAGATCATTA
AGTATTTCAATAaccaatgaaattttttttgatgggTTTAGTCCCAGAAA
CAAATTGTTCTCTAGAACAACAATTAGATATATTAGAAATTTACTTACTG
GTCAACTTCAGATCTCATTATTTACATCATCAACAATTATTTTACCTTAA
AACTCTTAACGATCTAGACGTG
Run BLAST on NCBI

transcript from alignment at sc0001818:5085..6963-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038278 ID=TCONS_00038278|Name=TCONS_00038278|organism=Clytia hemisphaerica|type=transcript|length=1879bp|location=Sequence derived from alignment at sc0001818:5085..6963- (Clytia hemisphaerica)
AAAAACACTACATGCAAAATAAATCAAGTAACAATCCAAGGTGAGAGTAC
AATTTTATCAATATTCCATATACATTGCATTAGGCAGCTATCTGCTTGGT
TTAACGAGGTGGAATATAGAATATATTTTGTTATTGAAAAACATTTCAAT
GGGTTTTAAGTTAAGGCCTCGAGAATTTCAAATAACATAAAGATTTTGCT
TTAATACCACAATCCTTAGATCACGATCCTAAAACGATTACGGAGCACAT
CAACCTACCTAAAATGCTGATAGTTATAGTTGGCACATATGGAGTTACTT
TGAAATTGCACACCTTCATCCAGACAGTTTTCATAGCCTTCAATTATGAC
CTATGATAAGTTTGAGTCCTGGAAATCTCAGCAACTTTACTCGTAAACTG
AAGAAGAGAGTTTCCAATGCAAACCACCTCGAAAATCTCCTGAATTTGAC
TGAAGATTAATCTGTTTGTCTCATTTTTTTCAGCTATTAGTAGGTCGCGT
ATACTCGAACAAAGGACACACGCTGTCATCATTCCTAAGGTATATTTAAA
GTCTATATCTATAATTTAATGATCGAAAACATTCAAAAGATAAATCTCTT
CAGATTGTACCTTATATAGCTCTGATTAAAAAATGCTACCAACTCTCGCA
GGTCTAGACAGACCCTAGAAAACCTTGGAAACAAAGGCTAATCAGGGAAC
CGTTCATCCGAATCAATGATAACTTACAGAAACAAATTTTCAAGTTGAAG
TCTAAGCATATAAATAACCATGAATTAAGGTTGAAAATGAGATTTTGCTA
AGCATATTGAGTCTCGACCCGATTTTATGTGTGCTTATAAAGAAAGAGTA
TATTCGGCAACCTGAAAAATTGCCTTACTTTCCCATTTTCCAGATTTTCC
AGGGTTCGTCTATACTTAAAACCTTATCTTATAACGTGATCAATGTAAAC
GCAATAACCTGGACAAAAGTCTGTCAGAATAGATTGTGAAAACTTTTCCT
GGGTCACATTGTACATATAGGCGTAGGTATGACTGAGGATTTATTTTTGG
ATCTTTCACACTCTCCTGATGTGTGATATACGATGATAATAACCAATCAA
TTTTTCTTTTTCAATTAACAGAATGATGGAGATACGATTTCTGATGGTGA
CCCTTGCGACAACATCAATTTTGACATAGATCCAGATAATTTACCATGCA
GAGTTTTGATATCCTTGAATAAAGGTGAGTTATTAGAGCTTCTTAATTTT
TGATTTTGCAAAGGTGTTCTGGGTTCTAAGATTATAAATAGAACGAATAG
TCGGACCGATTTGTTAGTTGTCCGTCCACAGTAAAAAAATCAATGACCCT
GCTTCAGGAAAAAATTTATTCAGTACATTGTGAGAGCTGATTATTTTAAA
CAAATAGTTCAGTTCAGCCACTTCGCTAACTTCATCTATAGCGTAGTGTA
ATTTTTCAACAACTTAGTTGAGTAAACTCACTTGACATGATTTAATCTTA
TTTCAGCTTCTCTTTTTGATGCATTACCGAGGATCCTTGAAGAATGCGAA
AAAAAACAACTGGTATCGATTACCATTCCTTTGGCTAACTTTGATGAAAG
AATACTGAAAATGGTTTTCGACCAAAGCTACGGAACTGACAAATCGACCG
AGATCTTTCGTTTTGCTTCACCAAGGCTGTCGAGGACAGACGCAGAAAAG
ATCATTAAGTATTTCAATAACCAATGAAATTTTTTTTGATGGGTTTAGTC
CCAGAAACAAATTGTTCTCTAGAACAACAATTAGATATATTAGAAATTTA
CTTACTGGTCAACTTCAGATCTCATTATTTACATCATCAACAATTATTTT
ACCTTAAAACTCTTAACGATCTAGACGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022900XLOC_022900Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038278-exon-sc0001818-1575043694:6924..6963TCONS_00038278-exon-sc0001818-1575043694:6924..6963Clytia hemisphaericaexon
TCONS_00038278-exon-sc0001818-1575043694:6425..6480TCONS_00038278-exon-sc0001818-1575043694:6425..6480Clytia hemisphaericaexon
TCONS_00038278-exon-sc0001818-1575043694:5740..5842TCONS_00038278-exon-sc0001818-1575043694:5740..5842Clytia hemisphaericaexon
TCONS_00038278-exon-sc0001818-1575043694:5085..5457TCONS_00038278-exon-sc0001818-1575043694:5085..5457Clytia hemisphaericaexon
TCONS_00038278-exon-sc0001818-1510915933:6924..6963TCONS_00038278-exon-sc0001818-1510915933:6924..6963Clytia hemisphaericaexon
TCONS_00038278-exon-sc0001818-1510915933:6425..6480TCONS_00038278-exon-sc0001818-1510915933:6425..6480Clytia hemisphaericaexon
TCONS_00038278-exon-sc0001818-1510915933:5740..5842TCONS_00038278-exon-sc0001818-1510915933:5740..5842Clytia hemisphaericaexon
TCONS_00038278-exon-sc0001818-1510915933:5085..5457TCONS_00038278-exon-sc0001818-1510915933:5085..5457Clytia hemisphaericaexon
TCONS_00038278-exon-sc0001818-1491911889:6924..6963TCONS_00038278-exon-sc0001818-1491911889:6924..6963Clytia hemisphaericaexon
TCONS_00038278-exon-sc0001818-1491911889:6425..6480TCONS_00038278-exon-sc0001818-1491911889:6425..6480Clytia hemisphaericaexon
TCONS_00038278-exon-sc0001818-1491911889:5740..5842TCONS_00038278-exon-sc0001818-1491911889:5740..5842Clytia hemisphaericaexon
TCONS_00038278-exon-sc0001818-1491911889:5085..5457TCONS_00038278-exon-sc0001818-1491911889:5085..5457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001818supercontigsc0001818:5085..6963 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.937038	0.756099	0.10302	0.258894	0.649205	0.347183	0	0.710877	0.391999	0.0426671	2.7888e-08	0	0.51802	0.985902	0.628852	0	0.400133	0.0284721	0.961543	0.13033	0.685596	1.27543	0	0.139272	0.595535	0.0759038	0.197754	0.155145	0.237905	0.318545
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038278 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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