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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038275 ID=TCONS_00038275|Name=TCONS_00038275|organism=Clytia hemisphaerica|type=transcript|length=725bp
ACTATGTATAGCGTTAAACCATCGAACAACAAAAGGTAGACGAAAGCAAT
ATTTACGACATACCAAAACAAATACCGAGCCAGTTTAAACCAGTATCGTG
taatcaaaatttacaaatcAAATCTTTCACATTTGTGCCTTCGCTTCGTA
TTTCTGTTTTGTTGATTCGAAATGATTGATGTCAAAAACTGCCTTCAACG
TTATGTGGTGTATACAGATAAAGTTGATTGGTTCAAAGCTGAAAAAAACT
GCAAAAGGATTGGTGGAGAATTGTTGACGATCAACGATAAGAATGAACAT
GActttattttcaaagttttaaaaaaGAAATTTGCTCTGTATGAATATTG
GATTGGCTTAAACGATATAGCCAAAGATTTTGAGTTTGTTTGGTCCGGAC
AGCCTAAGAAATTCGTAGGATACATAAATTGGTGTGGAAGTGGACATGAC
ACCAGTGATCCCCATTGTTTTGCAGCTCACATGCGTGGTCATATGTGGAA
TAGAATGTGTTTGCGTCATGAACTATGTTCGTACCGTAAAGCGTACATTT
GTGAGAACCGAAAGCCTTTAAAACTAAAAGCAAGAACTTAAAAGCAAATA
TCTAATATCTTTAGTTATCTCTACGACTGAtctatattttttcatttaaa
aagtcGAATCGAATCGGATTCATATCCCCGATGCCGTTTGAAGGTAAATG
gaaaagggttaaaaatcaTCGACTA Run BLAST on NCBI transcript from alignment at sc0001817:31061..33615- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038275 ID=TCONS_00038275|Name=TCONS_00038275|organism=Clytia hemisphaerica|type=transcript|length=2555bp|location=Sequence derived from alignment at sc0001817:31061..33615- (Clytia hemisphaerica)
ACTATGTATAGCGTTAAACCATCGAACAACAAAAGGTAGACGAAAGCAAT
ATTTACGACATACCAAAACAAATACCGAGCCAGTTTAAACCAGTATCGTG
TAATCAAAATTTACAAATCAAATCTTTCACATTTGTGCCTTCGCTTCGTA
TTTCTGTTTTGTTGATTCGAAATGATTGATGTCAAAAACTGGTAAGTCGA
TAAATAACCAAAATGAAATTCAAAAAAATTCATGATGTTTTAAATCTGTT
TGAGTGGAAATGATTTATCTACAGACTATCACATATTATAAATGGCATGA
AATGAAGAGCCTTCTCCCAAAAAAAGGGTCGCTACACAGGGACGTTTAGT
TAGACCGTTAGGACTAGAGTTGAAGCTTTAAACTTTCCAAAGCAAAAAAA
AGTCAAACCTTAATGTTTTTGTGTCGCATTTAGAAATTACACTTTCTTTG
TTTACATGTGGCATATTTTAATTGGAAAAATAATTTTCTTTTCATTTTTT
CCTTTTCTTAGGTCTAAAAATGCATAGGGTTGATGCGATTGCTGTTTTTT
CCATGATTTTTATGATTGGAGTGGGTTGCTCAAAACCGACAGGTTAGTAG
CCGGTACCTGTCTGATCACATTAGTTATTGTCTGCCAGCTTACACTACAG
AAATTATCATTAATAACTTCACCATACCATTAACCATTAACAATGTTTTT
CAGTACAGAAAAGAGCTTGGTACAATTTAACACTCCTACTTTGTCAAAGG
AAGTGAGGGTGCACTTAGCCAAAAATTGGATACGGGGACGTGCCGCTGGT
CAGGGTCACTTTTTTAAGCTCTGAAGATATTTGACAGGGTCTCAAATTTA
CTAATTTTCACATGTATATCTGACAGGGTCGAGTTTTACTTATTTTAGTC
AATTTTCAAGATAGAAAGAAGAAAACTTTTCAAAATTTTCGTTTAATTTT
AGTCATTTTTACCATTTTTTGAAATTTTTCGATTTTTTTGCTCTGACAGG
GTCCAATTACCAAATATCCATATCTGACAGGGTATACTTTTTAAACTTCA
GAGACACGTCCCCGTCGCTCGAAAAGGTCAGTGCCCCCCGGACATGTTTC
ATGCTTCTTTCAATATTTTGGGGAAATTACCTCTAGAAATTTACCCCTTA
ATATCGGAATGAAAAATGTCCGTTTGGCTCAAGTTATTGTTGGTATAATT
TATTTTTTAGTAATATATCGACTGTACAGCCTTCAACGTTATGTGGTGTA
TACAGATAAAGTTGATTGGTTCAAAGCTGAAAAAAACTGCAAAAGGATTG
GTGGAGAATTGTTGACGATCAACGATAAGAATGAACATGACTTTATTTTC
AAAGTTTTAAAAAAGTAAGTTTTTCTTTACTCTGTGGGCGGCAGACAAAG
TTCCGCTCAAAATTATAACCTTTGCATCTTGGTGATTTGTGTCTAGAGTC
TAACACTGATCACGATATCACGCAATTTTTTTGTTTTTAATCACGATCAC
GCAAATCAGTAAAAAACTTAATCACGCATCTCTTTGAAAAAGTCCAAATC
ACACACCACGGCTCCAAAAAAATTCAAATCACAATCAAGTTTTGACGTCT
GATCACGCAGTTACGAAAAAGAAATTTCCGAATCACCTTCTTACGCTAGA
AAAGTCCTATCACGACATCACGCAAATAGCTTAGGGTATCTGTACAATGA
TAGAATAGCTCAGATATATCTTACCCTATTAAAATAAAGCCAATTTTGTG
ACAAAAACTTTGCCGAAAAAGTAAGAAACTTTAACTCCTTGACGTTCTCA
AAAAGCTAAAAAATCGCATTTTTAAGATTTTTCAATGCTTAAACTTTGAA
TCGAATTATCTAAGCTTTGTAATCTTTGGTTACGTTCGAAGGCTTTTTCA
GAGCTCTATCTTTTAAGCGTGCCAGATTCTTGAATTAGGTCCTTAATCAA
AACTACCGGCGCCGAAAGTATCTCCTTGTTTAACAAAATTTTGCTGATGG
GGCGTCAAAAAATGACGTAAAAAGGGTAAAATAGTTTTCCATAAGCAAAG
ATTAGCTTTTAAAATTGTTTCCTATTAAAAATCAAAAATTGCCGACTTTA
TCTGTTGAGCCCATACCCACATACCCACATACTATAAAAAAGTTTTTCTT
CTTTAGGAAATTTGCTCTGTATGAATATTGGATTGGCTTAAACGATATAG
CCAAAGATTTTGAGTTTGTTTGGTCCGGACAGCCTAAGAAATTCGTAGGA
TACATAAATTGGTGTGGAAGTGGACATGACACCAGTGATCCCCATTGTTT
TGCAGCTCACATGCGTGGTCATATGTGGAATAGAATGTGTTTGCGTCATG
AACTATGTTCGTACCGTAAAGCGTACATTTGTGAGAACCGAAAGCCTTTA
AAACTAAAAGCAAGAACTTAAAAGCAAATATCTAATATCTTTAGTTATCT
CTACGACTGATCTATATTTTTTCATTTAAAAAGTCGAATCGAATCGGATT
CATATCCCCGATGCCGTTTGAAGGTAAATGGAAAAGGGTTAAAAATCATC
GACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038275-exon-sc0001817-1575043694:33425..33615 | TCONS_00038275-exon-sc0001817-1575043694:33425..33615 | Clytia hemisphaerica | exon |
| TCONS_00038275-exon-sc0001817-1575043694:32252..32386 | TCONS_00038275-exon-sc0001817-1575043694:32252..32386 | Clytia hemisphaerica | exon |
| TCONS_00038275-exon-sc0001817-1575043694:31061..31459 | TCONS_00038275-exon-sc0001817-1575043694:31061..31459 | Clytia hemisphaerica | exon |
| TCONS_00038275-exon-sc0001817-1510915933:33425..33615 | TCONS_00038275-exon-sc0001817-1510915933:33425..33615 | Clytia hemisphaerica | exon |
| TCONS_00038275-exon-sc0001817-1510915933:32252..32386 | TCONS_00038275-exon-sc0001817-1510915933:32252..32386 | Clytia hemisphaerica | exon |
| TCONS_00038275-exon-sc0001817-1510915933:31061..31459 | TCONS_00038275-exon-sc0001817-1510915933:31061..31459 | Clytia hemisphaerica | exon |
| TCONS_00038275-exon-sc0001817-1491911889:33425..33615 | TCONS_00038275-exon-sc0001817-1491911889:33425..33615 | Clytia hemisphaerica | exon |
| TCONS_00038275-exon-sc0001817-1491911889:32252..32386 | TCONS_00038275-exon-sc0001817-1491911889:32252..32386 | Clytia hemisphaerica | exon |
| TCONS_00038275-exon-sc0001817-1491911889:31061..31459 | TCONS_00038275-exon-sc0001817-1491911889:31061..31459 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001817 | supercontig | sc0001817:31061..33615 - |
Blast
The following BLAST results are available for this feature:
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