TCONS_00038274 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038274
Unique NameTCONS_00038274
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length635

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038274 ID=TCONS_00038274|Name=TCONS_00038274|organism=Clytia hemisphaerica|type=transcript|length=635bp
gGTCTAAAAATGCATAGGGTTGATGCGATTGCTGTTTTTTCCATGATTTT
TATGATTGGAGTGGGTTGCTCAAAACCGACAGtaATATATCGACTGTACA
GCCTTCAACGTTATGTGGTGTATACAGATAAAGTTGATTGGTTCAAAGCT
GAAAAAAACTGCAAAAGGATTGGTGGAGAATTGTTGACGATCAACGATAA
GAATGAACATGActttattttcaaagttttaaaaaaGAAATTTGCTCTGT
ATGAATATTGGATTGGCTTAAACGATATAGCCAAAGATTTTGAGTTTGTT
TGGTCCGGACAGCCTAAGAAATTCGTAGGATACATAAATTGGTGTGGAAG
TGGACATGACACCAGTGATCCCCATTGTTTTGCAGCTCACATGCGTGGTC
ATATGTGGAATAGAATGTGTTTGCGTCATGAACTATGTTCGTACCGTAAA
GCGTACATTTGTGAGAACCGAAAGCCTTTAAAACTAAAAGCAAGAACTTA
AAAGCAAATATCTAATATCTTTAGTTATCTCTACGACTGAtctatatttt
ttcatttaaaaagtcGAATCGAATCGGATTCATATCCCCGATGCCGTTTG
AAGGTAAATGgaaaagggttaaaaatcaTCGACTA
Run BLAST on NCBI

protein sequence of TCONS_00038274-protein

>TCONS_00038274-protein ID=TCONS_00038274-protein|Name=TCONS_00038274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
GLKMHRVDAIAVFSMIFMIGVGCSKPTVIYRLYSLQRYVVYTDKVDWFKA
EKNCKRIGGELLTINDKNEHDFIFKVLKKKFALYEYWIGLNDIAKDFEFV
WSGQPKKFVGYINWCGSGHDTSDPHCFAAHMRGHMWNRMCLRHELCSYRK
AYICENRKPLKLKART
Run BLAST on NCBI

transcript from alignment at sc0001817:31061..33105-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038274 ID=TCONS_00038274|Name=TCONS_00038274|organism=Clytia hemisphaerica|type=transcript|length=2045bp|location=Sequence derived from alignment at sc0001817:31061..33105- (Clytia hemisphaerica)
GGTCTAAAAATGCATAGGGTTGATGCGATTGCTGTTTTTTCCATGATTTT
TATGATTGGAGTGGGTTGCTCAAAACCGACAGGTTAGTAGCCGGTACCTG
TCTGATCACATTAGTTATTGTCTGCCAGCTTACACTACAGAAATTATCAT
TAATAACTTCACCATACCATTAACCATTAACAATGTTTTTCAGTACAGAA
AAGAGCTTGGTACAATTTAACACTCCTACTTTGTCAAAGGAAGTGAGGGT
GCACTTAGCCAAAAATTGGATACGGGGACGTGCCGCTGGTCAGGGTCACT
TTTTTAAGCTCTGAAGATATTTGACAGGGTCTCAAATTTACTAATTTTCA
CATGTATATCTGACAGGGTCGAGTTTTACTTATTTTAGTCAATTTTCAAG
ATAGAAAGAAGAAAACTTTTCAAAATTTTCGTTTAATTTTAGTCATTTTT
ACCATTTTTTGAAATTTTTCGATTTTTTTGCTCTGACAGGGTCCAATTAC
CAAATATCCATATCTGACAGGGTATACTTTTTAAACTTCAGAGACACGTC
CCCGTCGCTCGAAAAGGTCAGTGCCCCCCGGACATGTTTCATGCTTCTTT
CAATATTTTGGGGAAATTACCTCTAGAAATTTACCCCTTAATATCGGAAT
GAAAAATGTCCGTTTGGCTCAAGTTATTGTTGGTATAATTTATTTTTTAG
TAATATATCGACTGTACAGCCTTCAACGTTATGTGGTGTATACAGATAAA
GTTGATTGGTTCAAAGCTGAAAAAAACTGCAAAAGGATTGGTGGAGAATT
GTTGACGATCAACGATAAGAATGAACATGACTTTATTTTCAAAGTTTTAA
AAAAGTAAGTTTTTCTTTACTCTGTGGGCGGCAGACAAAGTTCCGCTCAA
AATTATAACCTTTGCATCTTGGTGATTTGTGTCTAGAGTCTAACACTGAT
CACGATATCACGCAATTTTTTTGTTTTTAATCACGATCACGCAAATCAGT
AAAAAACTTAATCACGCATCTCTTTGAAAAAGTCCAAATCACACACCACG
GCTCCAAAAAAATTCAAATCACAATCAAGTTTTGACGTCTGATCACGCAG
TTACGAAAAAGAAATTTCCGAATCACCTTCTTACGCTAGAAAAGTCCTAT
CACGACATCACGCAAATAGCTTAGGGTATCTGTACAATGATAGAATAGCT
CAGATATATCTTACCCTATTAAAATAAAGCCAATTTTGTGACAAAAACTT
TGCCGAAAAAGTAAGAAACTTTAACTCCTTGACGTTCTCAAAAAGCTAAA
AAATCGCATTTTTAAGATTTTTCAATGCTTAAACTTTGAATCGAATTATC
TAAGCTTTGTAATCTTTGGTTACGTTCGAAGGCTTTTTCAGAGCTCTATC
TTTTAAGCGTGCCAGATTCTTGAATTAGGTCCTTAATCAAAACTACCGGC
GCCGAAAGTATCTCCTTGTTTAACAAAATTTTGCTGATGGGGCGTCAAAA
AATGACGTAAAAAGGGTAAAATAGTTTTCCATAAGCAAAGATTAGCTTTT
AAAATTGTTTCCTATTAAAAATCAAAAATTGCCGACTTTATCTGTTGAGC
CCATACCCACATACCCACATACTATAAAAAAGTTTTTCTTCTTTAGGAAA
TTTGCTCTGTATGAATATTGGATTGGCTTAAACGATATAGCCAAAGATTT
TGAGTTTGTTTGGTCCGGACAGCCTAAGAAATTCGTAGGATACATAAATT
GGTGTGGAAGTGGACATGACACCAGTGATCCCCATTGTTTTGCAGCTCAC
ATGCGTGGTCATATGTGGAATAGAATGTGTTTGCGTCATGAACTATGTTC
GTACCGTAAAGCGTACATTTGTGAGAACCGAAAGCCTTTAAAACTAAAAG
CAAGAACTTAAAAGCAAATATCTAATATCTTTAGTTATCTCTACGACTGA
TCTATATTTTTTCATTTAAAAAGTCGAATCGAATCGGATTCATATCCCCG
ATGCCGTTTGAAGGTAAATGGAAAAGGGTTAAAAATCATCGACTA

Coding sequence (CDS) from alignment at sc0001817:31061..33105-

>TCONS_00038274 ID=TCONS_00038274|Name=TCONS_00038274|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at sc0001817:31061..33105- (Clytia hemisphaerica)
GAAATTTGCTCTGTATGAATATTGGATTGGCTTAAACGATATAGCCAAAG
ATTTTGAGTTTGTTTGGTCCGGACAGCCTAAGAAATTCGTAGGATACATA
AATTGGTGTGGAAGTGGACATGACACCAGTGATCCCCATTGTTTTGCAGC
TCACATGCGTGGTCATATGTGGAATAGAATGTGTTTGCGTCATGAACTAT
GTTCGTACCGTAAAGCGTACATTTGTGAGAACCGAAAGCCTTTAAAACTA
AAAGCAAGAACTTAATAATATATCGACTGTACAGCCTTCAACGTTATGTG
GTGTATACAGATAAAGTTGATTGGTTCAAAGCTGAAAAAAACTGCAAAAG
GATTGGTGGAGAATTGTTGACGATCAACGATAAGAATGAACATGACTTTA
TTTTCAAAGTTTTAAAAAAGGTCTAAAAATGCATAGGGTTGATGCGATTG
CTGTTTTTTCCATGATTTTTATGATTGGAGTGGGTTGCTCAAAACCGACA
GGAAATTTGCTCTGTATGAATATTGGATTGGCTTAAACGATATAGCCAAA
GATTTTGAGTTTGTTTGGTCCGGACAGCCTAAGAAATTCGTAGGATACAT
AAATTGGTGTGGAAGTGGACATGACACCAGTGATCCCCATTGTTTTGCAG
CTCACATGCGTGGTCATATGTGGAATAGAATGTGTTTGCGTCATGAACTA
TGTTCGTACCGTAAAGCGTACATTTGTGAGAACCGAAAGCCTTTAAAACT
AAAAGCAAGAACTTAATAATATATCGACTGTACAGCCTTCAACGTTATGT
GGTGTATACAGATAAAGTTGATTGGTTCAAAGCTGAAAAAAACTGCAAAA
GGATTGGTGGAGAATTGTTGACGATCAACGATAAGAATGAACATGACTTT
ATTTTCAAAGTTTTAAAAAAGGTCTAAAAATGCATAGGGTTGATGCGATT
GCTGTTTTTTCCATGATTTTTATGATTGGAGTGGGTTGCTCAAAACCGAC
AGGAAATTTGCTCTGTATGAATATTGGATTGGCTTAAACGATATAGCCAA
AGATTTTGAGTTTGTTTGGTCCGGACAGCCTAAGAAATTCGTAGGATACA
TAAATTGGTGTGGAAGTGGACATGACACCAGTGATCCCCATTGTTTTGCA
GCTCACATGCGTGGTCATATGTGGAATAGAATGTGTTTGCGTCATGAACT
ATGTTCGTACCGTAAAGCGTACATTTGTGAGAACCGAAAGCCTTTAAAAC
TAAAAGCAAGAACTTAATAATATATCGACTGTACAGCCTTCAACGTTATG
TGGTGTATACAGATAAAGTTGATTGGTTCAAAGCTGAAAAAAACTGCAAA
AGGATTGGTGGAGAATTGTTGACGATCAACGATAAGAATGAACATGACTT
TATTTTCAAAGTTTTAAAAAAGGTCTAAAAATGCATAGGGTTGATGCGAT
TGCTGTTTTTTCCATGATTTTTATGATTGGAGTGGGTTGCTCAAAACCGA
CAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022898XLOC_022898Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038274-proteinTCONS_00038274-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038274-exon-sc0001817-1575043694:33024..33105TCONS_00038274-exon-sc0001817-1575043694:33024..33105Clytia hemisphaericaexon
TCONS_00038274-exon-sc0001817-1575043694:32252..32405TCONS_00038274-exon-sc0001817-1575043694:32252..32405Clytia hemisphaericaexon
TCONS_00038274-exon-sc0001817-1575043694:31061..31459TCONS_00038274-exon-sc0001817-1575043694:31061..31459Clytia hemisphaericaexon
TCONS_00038274-exon-sc0001817-1510915933:33024..33105TCONS_00038274-exon-sc0001817-1510915933:33024..33105Clytia hemisphaericaexon
TCONS_00038274-exon-sc0001817-1510915933:32252..32405TCONS_00038274-exon-sc0001817-1510915933:32252..32405Clytia hemisphaericaexon
TCONS_00038274-exon-sc0001817-1510915933:31061..31459TCONS_00038274-exon-sc0001817-1510915933:31061..31459Clytia hemisphaericaexon
TCONS_00038274-exon-sc0001817-1491911889:33024..33105TCONS_00038274-exon-sc0001817-1491911889:33024..33105Clytia hemisphaericaexon
TCONS_00038274-exon-sc0001817-1491911889:32252..32405TCONS_00038274-exon-sc0001817-1491911889:32252..32405Clytia hemisphaericaexon
TCONS_00038274-exon-sc0001817-1491911889:31061..31459TCONS_00038274-exon-sc0001817-1491911889:31061..31459Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001817supercontigsc0001817:31061..33105 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.39	23.7681	14.6526	9.53149	1.7139	0.768526	0.806601	0	0.599672	0.260785	1.09687	0.110929	0.0553876	0	0.0472898	0	0	0	0	0	0	0	5.70722	6.01413	0	0.0798009	0.440091	0.437035	0.995801	1.8525
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR016187CTDL_fold
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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