TCONS_00038272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038272
Unique NameTCONS_00038272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length576

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038272 ID=TCONS_00038272|Name=TCONS_00038272|organism=Clytia hemisphaerica|type=transcript|length=576bp
GGAAAAGTGATTTTATTAACTTGAGTGGAAACTTGAGGATCTGGGTGACC
TCTTTTGGTTCCCTTTTTTACCCTACTTTGaaacttaaaatcttttaaag
aaaCTAGGGGAACAAAATGATTCAGTTTACCCTTCTCACAAAAACTCTCT
CGACAAAACATTATGTCATACCAGTTCAGATAATTAGGTTTGGAAAGTTC
TTCATAAAAATGACGAGGAAAAATCACTGAATTAAAAAGAGTAACATAGG
AGTTGCCATTTTCACCGCCAAATTTAGGACAATGAACTCTAATTTGTGTT
TTTATGACAGAAGAAAGAGCTAGAATACATGCATAAgatgaaaatttaaa
gttttgacACATATGTAGAGCTTCTGAATAAACAAGATCTTTAGAATAGA
GAACGTGGTCAGGTGGCTCAGTTTTGAAAGCAAAGCTAACTGCACTATTG
TAGCTGCGAAAAGAATCACGATGCACATTATGAGCATAGTGAAAATTTGG
GTGGTTGTAATAAAACTcagcatttaaaaaaagttcaaaacaagAAGTTA
CCCTTAACTTTTGAGCAAGTGACGAG
Run BLAST on NCBI

transcript from alignment at sc0001815:38919..39494

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038272 ID=TCONS_00038272|Name=TCONS_00038272|organism=Clytia hemisphaerica|type=transcript|length=576bp|location=Sequence derived from alignment at sc0001815:38919..39494 (Clytia hemisphaerica)
CTCGTCACTTGCTCAAAAGTTAAGGGTAACTTcttgttttgaactttttt
taaatgctgAGTTTTATTACAACCACCCAAATTTTCACTATGCTCATAAT
GTGCATCGTGATTCTTTTCGCAGCTACAATAGTGCAGTTAGCTTTGCTTT
CAAAACTGAGCCACCTGACCACGTTCTCTATTCTAAAGATCTTGTTTATT
CAGAAGCTCTACATATGTgtcaaaactttaaattttcatcTTATGCATGT
ATTCTAGCTCTTTCTTCTGTCATAAAAACACAAATTAGAGTTCATTGTCC
TAAATTTGGCGGTGAAAATGGCAACTCCTATGTTACTCTTTTTAATTCAG
TGATTTTTCCTCGTCATTTTTATGAAGAACTTTCCAAACCTAATTATCTG
AACTGGTATGACATAATGTTTTGTCGAGAGAGTTTTTGTGAGAAGGGTAA
ACTGAATCATTTTGTTCCCCTAGtttctttaaaagattttaagtttCAAA
GTAGGGTAAAAAAGGGAACCAAAAGAGGTCACCCAGATCCTCAAGTTTCC
ACTCAAGTTAATAAAATCACTTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022896XLOC_022896Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038272-exon-sc0001815-1491911889:38919..39494TCONS_00038272-exon-sc0001815-1491911889:38919..39494Clytia hemisphaericaexon
TCONS_00038272-exon-sc0001815-1510915933:38919..39494TCONS_00038272-exon-sc0001815-1510915933:38919..39494Clytia hemisphaericaexon
TCONS_00038272-exon-sc0001815-1575043694:38919..39494TCONS_00038272-exon-sc0001815-1575043694:38919..39494Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001815supercontigsc0001815:38919..39494 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.159167	0	0	0	0.489128	0.309047	0.83063	0.930826	0.378064	0.578194	0.315685	0	0.627216	0.281923	0.339863	0.314007	1.28598	0.534552	0.420166	0.511407	0	0.357326	0.149601	0.100769	0	0.279635	0.281579	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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