TCONS_00038266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038266
Unique NameTCONS_00038266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2129

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038266 ID=TCONS_00038266|Name=TCONS_00038266|organism=Clytia hemisphaerica|type=transcript|length=2129bp
AGCCAAACAAATTCACATACGAAAATATAAAACAGGTTTCTGAGATGATT
AATAAAGACGATTTTCTAATTACCTTTGACCTCAAAAGTGGATATCATCA
CGTACCAATTAACTTAAGATTTCAGACTTTTCTAGGATTCGCTTGGGAAT
TTGAcagcgaaatgcaattttttgtatttaaagttttacCTTTTGGTTTG
AATATCGCATGCTTAGTCTTTACAAAGCTTGTGCGTCAATTAGTCAAGAG
ATGGCGTTCAAAAGGAATAAAATGTGCTATGTATTTAGACGACGGTATCG
TAGGGGACAATTCATACTTCTCTTTAATACAAACAAGGGACCTGATGCTC
AACGATATGCGATCCGCTCTAACagttaatttcgaaaaatctaGCCCTGA
AccagagaaaaaaaacatggtTAGGATTCATTATAGACACAgaaaacatg
aattttgaagttccaacaccaaaaatccaaaaagtgctCAAGCTAATTTC
AGAGGCGTTAAATAGTGAATTCTTATCGGcaagaaaaatttccagaaTAG
CAGGCAATCTCATTGCTATGGCACCAGCTATCGGTCCGATCGTGTATTTA
TTCacaaaacaaatttacaaatttgtcGAATCAAGTTTTTCCTGGGACAA
AAAGCGTCTTTTGAGTCTTAACGTTTTACAAGAACTCGAATTTTGGTACA
ACAATctagaaaaagtaaaaactttCAGAATAAAAACGAAACCTGAGATC
ACCAGAATTATTTTTTCGGACGCAAGCGGTACCGGTTACGGAGGTTACGT
CGtacaaaagtttggaaatattATAGCAAAAGGAGATTTCGACCAGACCG
AAAGGGAAACAAGTTCGACATTTCGTGAGCTAACAGCAGTTAAATACATT
CTGCTATCTTTTCCTCAATTACTCGAAAACGAGACAGTGGAGTGGTTTAC
CGACAGCGACAATATCTGTAAAATTATTAATCGAGGTAGTACAAAACAAC
ACTTACAAAACATTGCAATtgatattttcaacatttgtttACTACACAAT
ATCGAAATTTATCCTACTTGGATCCCTCGAGCGTTAAACGAAACAGCcga
tataatttcaaaatcgaTCGACACAGATAATTGGTCCATTGACAACGAGA
CTTTCGATTACATTATTAAAAACTATGGACAAATTACAATCGACAGATTT
GCAGATAACCTAAACAAAAAATCCCCTAGATTCAACTCTCGTGAATACTG
CCCAGGGACATCAGCAATCAACGCATTTTCATGTCATTGGGGAAAAAATG
AGGTTAATTGGCTTTGCCCTCCCATATCACTAGTAGGTAAAACTATTCAG
CACTTGAGAAACTGTAAAGGTAAAGGAATATTGCTTGTTCCCTTGTGGCC
TTCGTCATACTATTGGCCATTACTGACGTCAAACGGTCTTCAATTTGAAC
CTTTTGTAAGAATGTTTTTAGTACTAGATCCTTTCTTTGTAAATTATTCC
AACACTAAATGCGTTTTTGATGGCTTTGCCAAATTTTATTCCTTAGCCTN
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtgtgtgtgtgtgttgtAAAGCATCGTGTATCTTGTGAGAAGAGGAAAA
ACAACATTGCTGAGCAACAACAGAATGTCGTAGACTACAATCAACTGCAA
GTTATAATACAACAATTAGTTCGCAACGAAATGCAACCAGTTATACAACA
AGCTGAGAATCGCGCCAAACAGGCACTCGATCAAGCAACAGCTAGTACTt
cgacaaaatttttcaaaattaaaagctAAATTGGATAAGCAGAGATTAAA
TGACAACATCACATTTACGAAAGCTGGCCACACCGACCAATTCAAACACA
ATCAACAAGTGTTGGAGGTTATTGACGACACCTTAGAAGCCATGGAATCC
GCCGACGTACAAGCAATGAAAGATCATCTAGAAAAAGAGAGATTTTGGGA
ATTTGATCAATCTACCGAAAGTCTATCTGTCGCCGGAAGAATTCAGGAAT
TTTCAAACTTCTGGGAAAATGAATTGAAAGCGTCGAATTTCGCCCTCGGT
ATCGTGCGGGAAGGCTACAAAATACCATT
Run BLAST on NCBI

transcript from alignment at sc0001814:34051..37060-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038266 ID=TCONS_00038266|Name=TCONS_00038266|organism=Clytia hemisphaerica|type=transcript|length=3010bp|location=Sequence derived from alignment at sc0001814:34051..37060- (Clytia hemisphaerica)
AGCCAAACAAATTCACATACGAAAATATAAAACAGGTTTCTGAGATGATT
AATAAAGACGATTTTCTAATTACCTTTGACCTCAAAAGTGGATATCATCA
CGTACCAATTAACTTAAGATTTCAGACTTTTCTAGGATTCGCTTGGGAAT
TTGACAGCGAAATGCAATTTTTTGTATTTAAAGTTTTACCTTTTGGTTTG
AATATCGCATGCTTAGTCTTTACAAAGCTTGTGCGTCAATTAGTCAAGAG
ATGGCGTTCAAAAGGAATAAAATGTGCTATGTATTTAGACGACGGTATCG
TAGGGGACAATTCATACTTCTCTTTAATACAAACAAGGGACCTGATGCTC
AACGATATGCGATCCGCTCTAACAGTTAATTTCGAAAAATCTAGCCCTGA
ACCAGAGAAAAAAAACATGGTTAGGATTCATTATAGACACAGAAAACATG
AATTTTGAAGTTCCAACACCAAAAATCCAAAAAGTGCTCAAGCTAATTTC
AGAGGCGTTAAATAGTGAATTCTTATCGGCAAGAAAAATTTCCAGAATAG
CAGGCAATCTCATTGCTATGGCACCAGCTATCGGTCCGATCGTGTATTTA
TTCACAAAACAAATTTACAAATTTGTCGAATCAAGTTTTTCCTGGGACAA
AAAGCGTCTTTTGAGTCTTAACGTTTTACAAGAACTCGAATTTTGGTACA
ACAATCTAGAAAAAGTAAAAACTTTCAGAATAAAAACGAAACCTGAGATC
ACCAGAATTATTTTTTCGGACGCAAGCGGTACCGGTTACGGAGGTTACGT
CGTACAAAAGTTTGGAAATATTATAGCAAAAGGAGATTTCGACCAGACCG
AAAGGGAAACAAGTTCGACATTTCGTGAGCTAACAGCAGTTAAATACATT
CTGCTATCTTTTCCTCAATTACTCGAAAACGAGACAGTGGAGTGGTTTAC
CGACAGCGACAATATCTGTAAAATTATTAATCGAGGTAGTACAAAACAAC
ACTTACAAAACATTGCAATTGATATTTTCAACATTTGTTTACTACACAAT
ATCGAAATTTATCCTACTTGGATCCCTCGAGCGTTAAACGAAACAGCCGA
TATAATTTCAAAATCGATCGACACAGATAATTGGTCCATTGACAACGAGA
CTTTCGATTACATTATTAAAAACTATGGACAAATTACAATCGACAGATTT
GCAGATAACCTAAACAAAAAATCCCCTAGATTCAACTCTCGTGAATACTG
CCCAGGGACATCAGCAATCAACGCATTTTCATGTCATTGGGGAAAAAATG
AGGTTAATTGGCTTTGCCCTCCCATATCACTAGTAGGTAAAACTATTCAG
CACTTGAGAAACTGTAAAGGTAAAGGAATATTGCTTGTTCCCTTGTGGCC
TTCGTCATACTATTGGCCATTACTGACGTCAAACGGTCTTCAATTTGAAC
CTTTTGTAAGAATGTTTTTAGTACTAGATCCTTTCTTTGTAAATTATTCC
AACACTAAATGCGTTTTTGATGGCTTTGCCAAATTTTATTCCTTAGCCTN
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTTGTAAAGCATCGTGTATCTTGTGAGAAGAGGAAAA
ACAACATTGCTGAGCAACAACAGAATGTCGTAGACTACAATCAACTGCAA
GTTATAATACAACAATTAGTTCGCAACGAAATGCAACCAGTTATACAACA
AGCTGAGAATCGCGCCAAACAGGCACTCGATCAAGCAACAGCTAGTACTT
CGACAAAATTTTTCAAAATTAAAAGCTAAATTGGATAAGCAGAGATTAAA
TGACAACATCACATTTACGAAAGCTGGCCACACCGACCAATTCAAACACA
ATCAACAAGTGTTGGAGGTTATTGACGACACCTTAGAAGCCATGGAATCC
GCCGACGTACAAGCAATGAAAGATCATCTAGAAAAAGGTAGGAATTTGAT
TCTAACCAGGGTGAAGCATTTGAGAATCGCTGATACATACGGCTGGTTCA
CTGTGAAAGAATTTAAGGCTAACGAACTGACATCAGGGGAGGCAGAAGAA
GAAAGACTGAAGAGAGCTATAATNACCAGGGTGAAGCATTTGAGAATCGC
TGATACGAACGGCTGGTTCACTGTGAAAGAATTTAAGGCTAACGAACTTA
CATCATGGGAGGCAGAAGAAAAAAGACTGAAGAGAGCTATAAAAAACGCG
GAATCAGTAAAAACTAAACTTTTCAAAAAGGCCAGGTTCGATGACGACAA
AGAAAATCCCAAGTCAAAACAAGACTCAAAATATAGAATGGACAATATAG
TTTGTCACGGATGTAGGAGAGTCGGCCATTATTCATCACATTGCCCCTTT
ACCTCAGCTTCTACAACTACATCGCAAATACCCTCGATTGCCTACTCGAC
AACAAGGTCTTCGTCTACTAATAAAAATCCTTCTTCAACAAATACCAGGA
GTAAATCCGGTTAAAAAACTATATAATTGAGTTACGACATTACAAAAAAG
ACAATTTATTCGTGTTATTAATTTTAAAAAACAATTTCCTCACCCTCGCA
ATCTGCTGAATTTATAGACTATAATAATATATTTTTATCATATGACTAAC
GTTGTGTTCTTAAATTGCCATCATAAGCCCATTATTCGTGTTTATGATTT
TTAAGAATGTCATTGATATATAATTTATGCCTTTGTATTGGCTAATGAAC
GCATGACAATTCGTCGAATGAGATATTTTACCTTGATCAAATTTGTTTTT
ATTTTACTTTCTTTCTTTTTTCGACTTTTCGCATTTTTGAAAAGTTTTTT
CTTACTTTGCCACTCCAGAGAGATTTTGGGAATTTGATCAATCTACCGAA
AGTCTATCTGTCGCCGGAAGAATTCAGGAATTTTCAAACTTCTGGGAAAA
TGAATTGAAAGCGTCGAATTTCGCCCTCGGTATCGTGCGGGAAGGCTACA
AAATACCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022891XLOC_022891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038266-exon-sc0001814-1575043694:35074..37060TCONS_00038266-exon-sc0001814-1575043694:35074..37060Clytia hemisphaericaexon
TCONS_00038266-exon-sc0001814-1575043694:34051..34192TCONS_00038266-exon-sc0001814-1575043694:34051..34192Clytia hemisphaericaexon
TCONS_00038266-exon-sc0001814-1510915933:35074..37060TCONS_00038266-exon-sc0001814-1510915933:35074..37060Clytia hemisphaericaexon
TCONS_00038266-exon-sc0001814-1510915933:34051..34192TCONS_00038266-exon-sc0001814-1510915933:34051..34192Clytia hemisphaericaexon
TCONS_00038266-exon-sc0001814-1491911889:35074..37060TCONS_00038266-exon-sc0001814-1491911889:35074..37060Clytia hemisphaericaexon
TCONS_00038266-exon-sc0001814-1491911889:34051..34192TCONS_00038266-exon-sc0001814-1491911889:34051..34192Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001814supercontigsc0001814:34051..37060 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.73396	2.17989	1.37212	1.51801	0.214524	0.149732	0.914241	2.40342	5.13552	5.45923	2.52757	5.52511	2.80025	5.09317	2.06205	3.37452	3.40504	4.84114	7.49957	9.23802	1.5226	2.38513	2.68912	2.67777	3.58856	2.74908	1.80359	0.716021	3.44783	3.18804
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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