TCONS_00038263 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00038263
Unique Name	TCONS_00038263
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	814

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0001814:23917..29433-

transcript sequence

>TCONS_00038263 ID=TCONS_00038263|Name=TCONS_00038263|organism=Clytia hemisphaerica|type=transcript|length=814bp
CATTGGTTCGGAGATAATGTTTCCTCCAGAATAAACAGCCACTGGGGGTT
TTACGCTACACGCTTCGTCACAAAAATTCAGTTGTATTTTATTTGAGCTT
ATCCAACTTGTAATTTTACTACTGattttgttaaacatttttttactaCG
AGTGTTAATGCAAGCAaataccaatgaaaaagtaactttattgttttcta
tttttctgtTCATTTCGAAAAGGAAAAATAGTCGAGAATGTTGTCAGGAA
ATGTGTAGAGCTAACAAGTCGTGTAAATTGTACGATCAAATATGGCAGCC
GAGTCGTGATATCTACGAATGCCGTTTTtacagtaaaaattatcaagtCT
TAAAAGCGGAAGGCGAGAAATTGGAGCTGATCCCGAGAGTGCAATATTAC
TCTAAGATGTATAAAGGCCTTACCGGTTGTCTACCATGATGGAAGTGGGC
TGGGGCAAGAAAGAAAGGGGAATACCCCCTTGAAGACGGCAGTATGAAAT
GGTGTTTCAATTTAAAATCATGCCAAGAAGTTTATGACAGAAGTTATTTG
AAATCTGGAGAAGGCTGGTACGAAATCAACGTTGAAGGAGTGATGATTCG
ACAATTATGCAAAATCTACGATGGAAAAGGATGGAcagtttttcagaaaa
gattaaaTCCGCTCAAATATCAATTTCACGAAAAAAATTGGCAGCAATAC
ACAGACGGTTTCAAGGAGAGCGATGAGGATTTTTGGCTGGGATTGACAAC
TCTCAACCTCATGACGCGATCAAAAGAAAATGAGTTGACGATTGGTGCTC
TGCAAGAAAATGGT

Run BLAST on NCBI

transcript from alignment at sc0001814:23917..29433-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00038263 ID=TCONS_00038263|Name=TCONS_00038263|organism=Clytia hemisphaerica|type=transcript|length=5517bp|location=Sequence derived from alignment at sc0001814:23917..29433- (Clytia hemisphaerica)
CATTGGTTCGGAGATAATGTTTCCTCCAGAATAAACAGCCACTGGGGGTT
TTACGCTACACGCTTCGTCACAAAAATTCAGTTGTATTTTATTTGAGCTT
ATCCAACTTGTAATTTTACTACTGATTTTGTTAAACATTTTTTTACTACG
AGTGTTAATGCAAGCAAATACCAATGAAAAAGTAACTTTATTGTTTTCTA
TTTTTCTGTTCATTTCGAAAAGGAAAAATAGTCGAGAATGTTGTCAGGAA
ATGTGTAGAGCTAACAAGTCGTGTAAATTGTACGATCAAATATGGCAGCC
GAGTCGTGATATCTACGAATGCCGTTTTTACAGTAAAAATTATCAAGTCT
TAAAAGCGGAAGGCGAGAAATTGGAGCTGATCCCGAGAGTGCAATATTAC
TCTAAGATGTATAAAGGCCTTACCGGTTGTCTACCATGATGGAAGTGGGC
TGGGGCAAGAAAGAAAGGGGAATACCCCCTTGAAGACGGCAGTATGAAAT
GGTGTTTCAATTTAAAATCATGCCAAGAAGTTTATGACAGAAGTTATTTG
AAATCTGGAGAAGGCTGGTACGAAATCAACGTTGAAGGTAAGGTTATAGA
CTCTTTTCTTTCTATTTATTCTATTCTTGTGGCCGGGAAACTCAAGCGAT
GAGCATTCCACTTGAAATATTTTGAAGAGGCCTCAAAGGGTGACTTAGAC
TTATTTTGACGTGATCAGGAACTCCACTCGGAACCTCATACAAGAGTTGA
AACTCCCCAGTCGGTTAGTAACTGAGAGCTAAGCATGATGGCTCTTTTCT
TCGGGTCCCCTAGATCTTTGTCTGTACACAGACCCAGTATCTACGGCTAA
TAGACGATGTCGGCTTTCCAAATTCTCCCCGAATGATTACCCATGATGCA
TTGCGGAAAGAAATTCACGGACGATATTGACTTTCCGCGTAATGCATCAT
TGGTAATCATTCGGGGAGAATTCGGAAAGCCGATATCGTCTATTTCAAAA
TTCATTGCCGTAGAGGATCTGTTGTCATTATGTCTTTTCCCATTTTTCAA
ATCGACCGCTGCGATGAAGTTTTGGTGAGAGAGGGGAGACGACAAGAGAA
GTGTTGCTATTTATAAATCATACTTCATCGCAGAGGTCTCCTTACGGGAA
TTTTTTTATGAAACAGACAATGCGCACAGAGTGTACTACGAAGTGATAAA
CGTCAGTTCCTAGATCTATTAAGTCCAAAATGGCGTAGATTACGTCACAA
CTGCAGGCTCATATATCTGTATTTCTCTTGCAGGAGTGATGATTCGACAA
TTATGCAAAATCTACGATGGAAAAGGATGGACAGTTTTTCAGAAAAGATT
AAATCCGCTCAAATATCAATTTCACGAAAAAAATTGGCAGCAATACACAG
ACGGTAATATCTTTTATTTATTTATAATCTGTGCTGTGCAAGTTTGGATT
AGATTTACGACGGGTTTGATTTGTTTTTGATTGACAACTCCGGTGATTTC
TAGATTCTAGGCCGGCGATGGACTAGCAAGCGTCTGTCTTTCCTTGGACA
CAGAAACACGGGAATATTGCTTATAAAGAGTTCTTATAAAAAAATAGAAA
TTGCCGTCAGAGAGTGGTTTGGAAAGCCATTGTATTCAGCGAACGAAGTG
AAGAGCTCATTGTAAGCGTAAACTGTAGCGAAATATGACGGCGTCGTTTA
CTAGTCTAGGCCGGCGAATTCGAAAATTCGAATTAGAAAGCCAAGTGTAT
TGATTAGCGTGAATATAACGTAGAAACAAACTTTCTTTTAATATTAGAGT
GAATTTGTACCCCTGAAATCAGCATTGGGGCTAATGTTTTCTTCATTCTA
AAGAAAGAGAAGGAAGCTTTTAAGCCGGTACATAGCGTGTCCCAACGTTC
ATCTAACTTTGTTTGAACCTGGTCAGATGGACCTTATTAATACATCGTTC
TGTGTCAGCTGGGTTTCTAAAGGTCAATGTTATAACATTTTCCACCACGA
CTTCATCGATTTCAGTACAGTATACAAACCCGGTGGGACCACCTACATAG
ATACCTACAATCATGGTAAAAATATTTGAGAAAAAAGGGAAGATGAATAC
AAAAGTAGGGCCTTGACAATCAAAGTTTAATTTAGTGAATGCACTACGGA
ATTCTGATAGTTAAACTTTGATAGTTCATTTTTCAAACATAATTTTGTAG
AGAAGAGCTTGTATNCCTAGTTATAATTAAGGTTTCGACGAAGACATGAA
AAAATCTAATTAAAAAGAAATGACTCTTATGTTTTGCAAGCTAAAGTTTA
TTCCACTTAAATTGGCCAGTTGCTTTGAAGTTTTTATAAGATGCTCACAC
AATTGGTTATTCAAAACAATAGAGATGACGCGTTTTTTAGAAAAATATAA
TAAAAGTTTTTGTTGGAATAGTTAACGACCAATCCAATGACAAAAACTCT
TGTAAAATGTTCATCTTGACCCAAATTGGCATTCATTTTTGATATCATGT
GGAAACCATATCAGAGTAATTAGACTACTCGAGTACCTAATAAACGTACA
GTAGCGAATAAACGTACAGGGTCGAAAATGGAGNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTTTGATTTGTTTTTGATTGACAACTCCGGTGATTTCTA
GATTCTAGGCCGGCGATGGACTAGCAAGCGTCTGTCTTTCCTTGGACACA
GAACACGGGAATATTGCTTATAAAGAGTTCTTATAAAAAAATAGAAATTG
CCGTCAGAGAGTGGTTTGGAAAGCCATTGTATTCAACGAACGAAGTGAAG
AGCTCATTGTAAGCGTAAACTGTAGCGAAATATGACGGTGTGGTTTACTA
GTCTAGGCCGGCGAATTCGAAAATTCGAATTAGAAAGCCAAGTGTATTGA
TTAGCGTGAATATAACGTAGAAACAAACTTTCTTTTAATATTAGAGTGAA
TTTGTACCCCTGAAATCAGCATTGGGACTAATGTTTTCTTCATTCTAAAG
AAAGAGAAGGAAGCTTTTAAGCCGGTACATAGCGTGTCCCAACGTTCATC
TAACGTTGTATGAACCTGGTCAGATGGACCTTATTAATACATCGTTCTGT
GTCAGCTGGGTTTCTAAAGGTCAATGTTATAACATTTTCCACCATGACTT
CATCGATTTTAGTACAGTATACAAACCCGGTGGGACCACCTACATAGATA
CCTACAATCATGGTAAAAATATTTGAGAAAAAAGGGAAATTCCCACGAAA
TCTTACAACCACAAACGATTTGGAAGCGCTCTAAATTAGCTTGGACGGGT
GGAGTTTTAACTCTGAGTTTTAACGCTAAGATCAAGACTAAAAGTCCAAG
AATGGTTCAATAGGGCTCAGAATATAGCCTGGAAGTCTATAAACGCCTCC
CGAATTGAAATATTCGAATAAATTTATCAATTTGCCCAAAAACGACTTCG
ACTTCGCCCGAACTTTAAATTGCTGAAAACAAGGAATTAGCCAAAATTCC
CAATAATATATTTTGGCCGAGATTGTACTAGGAAACAGCCAATAAGACAG
GGGTGCGAATCGGAACAACAACGAGTGAAAGTGAAGGACTGGTGTCTAAC
CTCGTACTTCAAAAGTCGCACGAACCAGATTATCTGGTGTCGAAAAAAGA
TTTAAATTCGAAATCCTACTTCTTGTTGCATATATGAGCTTTATTGTAAA
CACGAATCCAACATATTAAACTGATTTGACCAAGGTTAACTTGCTAAATT
CTATTTGCGATGCTTCAAACACAATTTCAATTGTTCTCTACTCTATTGTC
TTGTTTTAAGGTTTCAAGGAGAGCGATGAGGATTTTTGGCTGGGATTGAC
AACTCTCAACCTCATGACGCGATCAAAAGAAAATGAGTTGACGATTGGTG
CTCTGCAAGAAAATGGT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_022889	XLOC_022889	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00038263-exon-sc0001814-1575043694:28847..29433	TCONS_00038263-exon-sc0001814-1575043694:28847..29433	Clytia hemisphaerica	exon
TCONS_00038263-exon-sc0001814-1575043694:28031..28150	TCONS_00038263-exon-sc0001814-1575043694:28031..28150	Clytia hemisphaerica	exon
TCONS_00038263-exon-sc0001814-1575043694:23917..24023	TCONS_00038263-exon-sc0001814-1575043694:23917..24023	Clytia hemisphaerica	exon
TCONS_00038263-exon-sc0001814-1510915933:28847..29433	TCONS_00038263-exon-sc0001814-1510915933:28847..29433	Clytia hemisphaerica	exon
TCONS_00038263-exon-sc0001814-1510915933:28031..28150	TCONS_00038263-exon-sc0001814-1510915933:28031..28150	Clytia hemisphaerica	exon
TCONS_00038263-exon-sc0001814-1510915933:23917..24023	TCONS_00038263-exon-sc0001814-1510915933:23917..24023	Clytia hemisphaerica	exon
TCONS_00038263-exon-sc0001814-1491911889:28847..29433	TCONS_00038263-exon-sc0001814-1491911889:28847..29433	Clytia hemisphaerica	exon
TCONS_00038263-exon-sc0001814-1491911889:28031..28150	TCONS_00038263-exon-sc0001814-1491911889:28031..28150	Clytia hemisphaerica	exon
TCONS_00038263-exon-sc0001814-1491911889:23917..24023	TCONS_00038263-exon-sc0001814-1491911889:23917..24023	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0001814	supercontig	sc0001814:23917..29433 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.172221	0	0.174955	0	0	0	0	0	0	0	0	0	0.0587093	0	0	0.0807077	0.401326	0.755455	0	0.161456	3.29183	2.92837	0.346352	0.493398	1.31746	1.17749	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00038263 vs. Swiss-Prot (Human)

BLAST of TCONS_00038263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00038263 (transcript) - C. hemisphaerica