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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038261 ID=TCONS_00038261|Name=TCONS_00038261|organism=Clytia hemisphaerica|type=transcript|length=1382bp
GTTGCAATCATGGTAAACAGGCTTCCAATGAAGCGAGAAATGTCGTCAAC
TAGTGATATGGGAGGGCAAAGCCAATTAACCTCATTTTTTCCCCAATGAC
ATGAAAATGCGTTGATTGCTGATGTCCCTGGGCAGTATTCACGAGAGTTG
AATCTAGGGGATTTTTTGTTTAGGTTATCTGCAAATCTGTCGATTGTAAT
TTGTCCATAGTTTTTAATAATGTAATCGAAAGTCTCGTTGTCAATGGACC
AATTATCTGTGTCGAtcgattttgaaattatatcgGCTGTTTCGTTTAAC
GCTCGAGGGATCCAAGTAGGATAAATTTCGATATTGTGTAGTaaacaaat
gttgaaaatatcaATTGCAATGTTTTGTAAGTGTTGTTTTGTACTACCTC
GATTAATAATTTTACAGATATTGTCGCTGTCGGTAAACCACTCCACTGTC
TCGTTTTCGAGTAATTGAGGAAAAGATAGCAGAATGTATTTAACTGCTGT
TAGCTCACGAAATGTCGAACTTGTTTCCCTTTCGGTCTGGTCGAAATCTC
CTTTTGCTATaatatttccaaacttttgtaCGACGTAACCTCCGTAACCG
GTACCGCTTGCGTCCGAAAAAATAATTCTGGTGATCTCAGGTTTCGTTTT
TATTCTGaaagtttttactttttctagATTGTTGTACCAAAATTCGAGTT
CTTGTAAAACGTTAAGACTCAAAAGACGCTTTTTGTCCCAGGAAAAACTT
GATTCgacaaatttgtaaatttgttttgtGAATAAATACACGATCGGACC
GATAGCTGGTGCCATAGCAATGAGATTGCCTGCTAttctggaaatttttc
ttgCCGATAAGAATTCACTATTTAACGCCTCTGAAATTAGCTTGagcact
ttttggatttttggtgttggaacttcaaaattcatgttttcTGTGTCTAT
AATGAATCCTAaccatgttttttttctctggTTCAGGGCtagatttttcg
aaattaactGTTAGAGCGGATCGCATATCGTTGAGCATCAGGTCCCTTGT
TTGTATTAAAGAGAAGTATGAATTGTCCCCTACGATACCGTCGTCTAAAT
ACATAGCACATTTTATTCCTTTTGAACGCCATCTCTTGACTAATTGACGC
ACAAGCTTTGTAAAGACTAAGCATGCGATATTCAAACCAAAAGgtaaaac
tttaaatacaaaaaattgcatttcgctgTCAAATTCCCAAGCGAATCCTA
GAAAAGTCTGAAATCTTAAGTTAATTGGTACGTGATGATATCCACTTTTG
AGGTCAAAGGTAATTAGAAAATCGTCTTTATTAATCATCTCAGAAACCTG
TTTTATATTTTCGTATGTGAATTTGTTTGGCT Run BLAST on NCBI transcript from alignment at sc0001814:32098..37060+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038261 ID=TCONS_00038261|Name=TCONS_00038261|organism=Clytia hemisphaerica|type=transcript|length=4963bp|location=Sequence derived from alignment at sc0001814:32098..37060+ (Clytia hemisphaerica)
GTTGCAATCATGGTAAACAGGCTTCCAATGAAGCGAGAAATGTCGTCAAC
ATAAAACAGGAAAAAATACAATTGTTAAGGGAATTAGATGACAAAGAAGT
TGTATTTATTTCAATAGGTTATTTCTTATTCTAACATATCGATGAACAAG
GCTAAGGAATAAAATTTGGCAAAGCCATCAAAAACGCATTTAGTGTTGGA
ATAATTTACAAAGAAAGGATCTAGTACTAAAAACATTCTTACAAAAGGTT
CAAATTGAAGACCGTTTGACGTCAGTAATGGCCAATAGTATGACGAAGGC
CACAAGGGAACAAGCAATATTCCTTTACCTTTACAGTTTCTCAAGTGCTG
AATAGTTTTACCTACTAGTGATATGGGAGGGCAAAGCCAATTAACCTCAT
TTTTTCCCCAATGACATGAAAATGCGTTGATTGCTGATGTCCCTGGGCAG
TATTCACGAGAGTTGAATCTAGGGGATTTTTTGTTTAGGTTATCTGCAAA
TCTGTCGATTGTAATTTGTCCATAGTTTTTAATAATGTAATCGAAAGTCT
CGTTGTCAATGGACCAATTATCTGTGTCGAtcgattttgaaattatatcg
GCTGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTCCCAAG
CGAATCCTAGAAAAGTCTGAAATCTTAAGTTAATTGGTACGTGATGATAC
CCACTTTTGAGGTCAAAGGTAATTAGAAAATCGTCTTTATTAATCATCTC
AGAAACCTGTTTTATATTTTCGTATGTGAATTTGTTTGGCTGAATGTGTT
TGTTTACATGCCTGAGATCTAGTACTAGCCTAAGTTTGGAATTCCTTTCT
GCAACGGTCAGCGGATTGATGCAATAAGGTGGCTCTGTCACTTTTTCAAT
ACAACCGTTTTCTAAAAGCTTTTCAATACTATCTTTGACAAACTCTCGAT
TCTTTAAGCTAGATGTGTTGTTTTTGGCGAAAAATGGAGAAGGATCCGAT
TCAAATGGTATTTTGTAGCCTTCCCGCACGATACCGAGGGCGAAATTCGA
CGCTTTCAATTCATTTTCCCAGAAGTTTGAAAATTCCTGAATTCTTCCGG
CGACAGATAGACTTTCGGTAGATTGATCAAATTCCCAAAATCTCTCTGGA
GTGGCAAAgtaagaaaaaacttttcaaaaatgcgaaaagtcgaaaaaaga
aagaaagtaaaataaaaacaaatttgatcaAGGTAAAATATCTCATTCGA
CGAATTGTCATGCGTTCATTAGCCAATACAAAGGCATAAATTATATATCA
ATGACattcttaaaaatcataaacaCGAATAATGGGCTTATGATGGCAAT
TTAAGAACACAACGTTAGTCATAtgataaaaatatattattatAGTCTAT
AAATTCAGCAGATTGCGAGGGTGaggaaattgttttttaaaattaataac
acgaataaattgtcttttttgtAATGTCGTAACTCAATTATATAGTTTTT
TAACCGGATTTACTCCTGGTATTTGTTGAAGAAGGATTTTTATTAGTAGA
CGAAGACCTTGTTGTCGAGTAGGCAATCGAGGGTATTTGCGATGTAGTTG
TAGAAGCTGAGGTAAAGGGGCAATGTGATGAATAATGGCCGACTCTCCTA
CATCCGTGACAAACTATATTGTCCATTCTATATTTTGAGTCTTGTTTTGA
CTTGGGATTTTCTTTGTCGTCATCGAACCTGgcctttttgaaaagtttag
ttTTTACTGATTCCGCGTTTTTTATAGCTCTCTTCAGTCTTTTTTCTTCT
GCCTCCCATGATGTAAGTTCGTTAGCCTTAAATTCTTTCACAGTGAACCA
GCCGTTCGTATCAGCGATTCTCAAATGCTTCACCCTGGTNATTATAGCTC
TCTTCAGTCTTTCTTCTTCTGCCTCCCCTGATGTCAGTTCGTTAGCCTTA
AATTCTTTCACAGTGAACCAGCCGTATGTATCAGCGATTCTCAAATGCTT
CACCCTGGTTAGAATCAAATTCCTACCTTTTTCTAGATGATCTTTCATTG
CTTGTACGTCGGCGGATTCCATGGCTTCTAAGGTGTCGTCAATAACCTCC
AACACTTGTTGATTGTGTTTGAATTGGTCGGTGTGGCCAGCTTTCGTAAA
TGTGATGTTGTCATTTAATCTCTGCTTATCCAATTTagcttttaattttg
aaaaattttgtcgaAGTACTAGCTGTTGCTTGATCGAGTGCCTGTTTGGC
GCGATTCTCAGCTTGTTGTATAACTGGTTGCATTTCGTTGCGAACTAATT
GTTGTATTATAACTTGCAGTTGATTGTAGTCTACGACATTCTGTTGTTGC
TCAGCAATGTTGTTTTTCCTCTTCTCACAAGATACACGATGCTTTacaac
acacacacacacacacacacacacacacacacacacacacacacacacac
acacacacacacaNAGGCTAAGGAATAAAATTTGGCAAAGCCATCAAAAA
CGCATTTAGTGTTGGAATAATTTACAAAGAAAGGATCTAGTACTAAAAAC
ATTCTTACAAAAGGTTCAAATTGAAGACCGTTTGACGTCAGTAATGGCCA
ATAGTATGACGAAGGCCACAAGGGAACAAGCAATATTCCTTTACCTTTAC
AGTTTCTCAAGTGCTGAATAGTTTTACCTACTAGTGATATGGGAGGGCAA
AGCCAATTAACCTCATTTTTTCCCCAATGACATGAAAATGCGTTGATTGC
TGATGTCCCTGGGCAGTATTCACGAGAGTTGAATCTAGGGGATTTTTTGT
TTAGGTTATCTGCAAATCTGTCGATTGTAATTTGTCCATAGTTTTTAATA
ATGTAATCGAAAGTCTCGTTGTCAATGGACCAATTATCTGTGTCGAtcga
ttttgaaattatatcgGCTGTTTCGTTTAACGCTCGAGGGATCCAAGTAG
GATAAATTTCGATATTGTGTAGTaaacaaatgttgaaaatatcaATTGCA
ATGTTTTGTAAGTGTTGTTTTGTACTACCTCGATTAATAATTTTACAGAT
ATTGTCGCTGTCGGTAAACCACTCCACTGTCTCGTTTTCGAGTAATTGAG
GAAAAGATAGCAGAATGTATTTAACTGCTGTTAGCTCACGAAATGTCGAA
CTTGTTTCCCTTTCGGTCTGGTCGAAATCTCCTTTTGCTATaatatttcc
aaacttttgtaCGACGTAACCTCCGTAACCGGTACCGCTTGCGTCCGAAA
AAATAATTCTGGTGATCTCAGGTTTCGTTTTTATTCTGaaagtttttact
ttttctagATTGTTGTACCAAAATTCGAGTTCTTGTAAAACGTTAAGACT
CAAAAGACGCTTTTTGTCCCAGGAAAAACTTGATTCgacaaatttgtaaa
tttgttttgtGAATAAATACACGATCGGACCGATAGCTGGTGCCATAGCA
ATGAGATTGCCTGCTAttctggaaatttttcttgCCGATAAGAATTCACT
ATTTAACGCCTCTGAAATTAGCTTGagcactttttggatttttggtgttg
gaacttcaaaattcatgttttcTGTGTCTATAATGAATCCTAaccatgtt
ttttttctctggTTCAGGGCtagatttttcgaaattaactGTTAGAGCGG
ATCGCATATCGTTGAGCATCAGGTCCCTTGTTTGTATTAAAGAGAAGTAT
GAATTGTCCCCTACGATACCGTCGTCTAAATACATAGCACATTTTATTCC
TTTTGAACGCCATCTCTTGACTAATTGACGCACAAGCTTTGTAAAGACTA
AGCATGCGATATTCAAACCAAAAGgtaaaactttaaatacaaaaaattgc
atttcgctgTCAAATTCCCAAGCGAATCCTAGAAAAGTCTGAAATCTTAA
GTTAATTGGTACGTGATGATATCCACTTTTGAGGTCAAAGGTAATTAGAA
AATCGTCTTTATTAATCATCTCAGAAACCTGTTTTATATTTTCGTATGTG
AATTTGTTTGGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038261-exon-sc0001814-1491911889:32098..32147 | TCONS_00038261-exon-sc0001814-1491911889:32098..32147 | Clytia hemisphaerica | exon |
| TCONS_00038261-exon-sc0001814-1510915933:32098..32147 | TCONS_00038261-exon-sc0001814-1510915933:32098..32147 | Clytia hemisphaerica | exon |
| TCONS_00038261-exon-sc0001814-1575043694:32098..32147 | TCONS_00038261-exon-sc0001814-1575043694:32098..32147 | Clytia hemisphaerica | exon |
| TCONS_00038261-exon-sc0001814-1491911889:35729..37060 | TCONS_00038261-exon-sc0001814-1491911889:35729..37060 | Clytia hemisphaerica | exon |
| TCONS_00038261-exon-sc0001814-1510915933:35729..37060 | TCONS_00038261-exon-sc0001814-1510915933:35729..37060 | Clytia hemisphaerica | exon |
| TCONS_00038261-exon-sc0001814-1575043694:35729..37060 | TCONS_00038261-exon-sc0001814-1575043694:35729..37060 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001814 | supercontig | sc0001814:32098..37060 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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