TCONS_00038257 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038257
Unique NameTCONS_00038257
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length629

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038257 ID=TCONS_00038257|Name=TCONS_00038257|organism=Clytia hemisphaerica|type=transcript|length=629bp
ACAGAACGAGTTCCGGTCTCCATATCTCAAGAAGTAGACAAACtcctaca
aaaagaaaaaccacCGCCCTCTTCGTCTCAAAACACGCCCAAAAAACAAT
CAATAAAGATGAATAAGGCGTTCAAAAAatcagttgttcgacaaccGAAG
CAAGAGACAAATTCTCGAATACCAGAGCAAGATGATGCTATGGTAACGAC
TAATGACATGAAAGATGGTGTCGTAAGCAGTGGTGATGTACAACTGGTTc
atttgctgaaaaatttactGGTCAAGGAGCTTGGCAACTCTACAGACGAG
AGaacaatttcaacaagaacgaACAAATCCTTGACGAGCAATCCTCAACC
AAACAGTAGACCGAAACAAAATGCGAATACGAAGAAAGCAGAAAGTAAAA
CGACGAACGTTCAAACAAGGCTGATGAAGAAAAAACCGACCAAATCATCT
CGCGAGATGACCAAGTCTAAAGGCTTATcgacaaaaacaacaaatacaGC
CTGGAAATGATATTTTCCGTCATTGCCAAAACAAATTTCTGTACATTATC
TttattgaaaatatatatttaaattcGATTTATTTTTACATCAGACGCAG
TCATTATATTCCTTTTTGGTCATCCAACT
Run BLAST on NCBI

protein sequence of TCONS_00038257-protein

>TCONS_00038257-protein ID=TCONS_00038257-protein|Name=TCONS_00038257-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
TERVPVSISQEVDKLLQKEKPPPSSSQNTPKKQSIKMNKAFKKSVVRQPK
QETNSRIPEQDDAMVTTNDMKDGVVSSGDVQLVHLLKNLLVKELGNSTDE
RTISTRTNKSLTSNPQPNSRPKQNANTKKAESKTTNVQTRLMKKKPTKSS
REMTKSKGLSTKTTNTAWK
Run BLAST on NCBI

transcript from alignment at sc0001811:25307..28153+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038257 ID=TCONS_00038257|Name=TCONS_00038257|organism=Clytia hemisphaerica|type=transcript|length=2847bp|location=Sequence derived from alignment at sc0001811:25307..28153+ (Clytia hemisphaerica)
ACAGAACGAGTTCCGGTCTCCATATCTCAAGAAGTAGACAAACtcctaca
aaaagaaaaaccacCGCCCTCTTCGTCTCAAAACACGCCCAAAAAACAAT
CAATAAAGATGAATAAGGCGTTCAAAAAatcagttgttcgacaaccGAAG
CAAGAGGTAAAGTTTGAGTTAATAAATGAATGAGTTAACTATATTTGTCA
TTGTCCTACTCACTTTTCTACTAGCATGTACTTTCGAATGAATGAACGAG
TTTTACTATTTCTGCtcgtacagttgactctcgcttgTTTGcgtatttga
atctttctataatccgTATAAACtcccagtccccgtcaaggagaaaccct
cttaacATACTTTCCATAAACAAATAAGATTctccgttcgagttcgaatt
agcgagagacAACTGTAACTCTATGACATTGTCCTGATCACTATATTTTT
TTGTCGACGTGCATGTTCTTTCGACTCCTCTTGCGATGGTAAGATGTTAT
ACTCCCGCCAAGGAGGCCCGAGgtcgatacccaccgtgtctctacgattt
acttggcaagtgaataccttcgcccgggtcaacacATGCCATGTAAgtgg
aattgggtaccattactctgatacaagagtgtggaNCTGGGGTCAAAACA
TGCCAtatgaggggaattgggtaccattactctaATACAAGAGTGTGGAt
agattagacagacattgtgacgtgccgtggcactcataaggttcggcctc
gcgtgagcatcgctctcccagtgtcgttcgagtgtcatggtatacgccgt
ggcttggcagctcgcgtctgtcaagttgcagtgtctgtcagcgccgtgat
tcctactccttcgtgggtaggacccatcccgaatgcattcggagggctca
taCCTATCTTTGCAAGAATCTAAACCCAAGGTATTTCGATAGCAAGTTTT
TAAATAACATTGAAGACGCTTTAGCTAAAAAGAACTTACCATCAAGAGAT
CACCCTTAAGGATGAGACAATCTACTTTTTTATTCTCCTCAGACAAATTC
TCGAATACCAGAGCAAGATGATGCTATGGTAACGACTAATGACATGAAAG
ATGGTGTCGTAAGCAGTGGTGATGTACAACTGGTTcatttgctgaaaaat
ttactGGTCAAGTAAGTTTATTGttatttacacgctttttttataagaat
agtgtactttggatgagagtCAAGTactcttaagaaagtgccaaaattga
gggtgaaatattcttaatgtATTCTTACTTATttagttttgactttttta
caaacatgagaaatgaacAATTTGAGAGCTTTGGACTTTTAAGTGagcat
ttgggttaaaattacattgcttcctcaaagcttcagtttatctctaacaa
aggaagcagttttttctgttaaccaaatacaaaatgactgtattcttatc
aaattctgtgaaattcaccctagagggtattcttagggtattcttatgat
ttggcaacttttcaccctgatattcttatagaagatattcttataaaaaa
agcgtctATTTGTTAGTCTAAGgtgaactttttgataaaaacttttgttt
ttagatTGTTTCCAAAAAATTGTCGGACGAGACAAATTCTTTTCCCCAAT
GCTATACTTTTAAACCCTTTTTTAATGATACTTCTTAAACAATATTTAAC
ATTCTGGTTGCAGGGAGCTTGGCAACTCTACAGACGAGAGaacaatttca
acaagaacgaACAAATCCTTGACGAGCAATCCTCAACCAAACAGTAGACC
GAAACAAAATGCGAATACGAAGAAAGCAGAAAGTAAAACGACGAACGTAA
GTCTCTTTGTTTTGAGATGTTAAAATTGGTgcttactttaatgggataaa
tgtTGGGTGTCATCCACGAAATTTAGTCCCCTTGGAAATTTGTAAAGGTC
ttatccgaaaaaaaatttaaaaaaaaaaactctaaaaatgtCAGATAATC
ACTTTTTAAATGTGAACTGGCATCAAAAAGCGCTAATAATGCATATTTCA
ACAGGCAGTATGTATAATTTAGCAGTAAAAAGACACAACatcatgaaaat
attgtctcctgataatgccatccgcgaaaattgaGTCCCCgctaaatctt
aaaatttcgcggatgagctcaaccacaaaaatttatcccattaaagtagt
ccGAAATCCACTCTTTTTAGCACAATCCCCTTAAAGGTTGCTTCTCTAGA
TcaagttgaaataaaaaagactctctcataaattacgtcacgggCAATGC
TTACttcgtttttaaaatattgctttGGTAATTACTTCACCTTGGCATGG
TTTCAAAAGAAGGCAGTAATTTATACAAAGACCCTATTGCGATCGCTATa
ttagactttttcataaattacgtcacgagcaactcttacctcgttttcaa
aatatcactatggtaattgattcccagaaGAGTTCATTATAAGTTCACTC
TTTTCAAGGGGTTtataatcaccttggtaatggtttcaaaacgaggcagc
cGTTGCattcaaaacaaattatgaaAAGGCCTTAGAAACAGCATTGAAAA
GAAATGGACGTAAATGATATTTCTAGGTTCAAACAAGGCTGATGAAGAAA
AAACCGACCAAATCATCTCGCGAGATGACCAAGTCTAAAGGCTTATcgac
aaaaacaacaaatacaGCCTGGAAATGATATTTTCCGTCATTGCCAAAAC
AAATTTCTGTACATTATCTttattgaaaatatatatttaaattcGATTTA
TTTTTACATCAGACGCAGTCATTATATTCCTTTTTGGTCATCCAACT

Coding sequence (CDS) from alignment at sc0001811:25307..28153+

>TCONS_00038257 ID=TCONS_00038257|Name=TCONS_00038257|organism=Clytia hemisphaerica|type=CDS|length=2040bp|location=Sequence derived from alignment at sc0001811:25307..28153+ (Clytia hemisphaerica)
ACAGAACGAGTTCCGGTCTCCATATCTCAAGAAGTAGACAAACtcctaca
aaaagaaaaaccacCGCCCTCTTCGTCTCAAAACACGCCCAAAAAACAAT
CAATAAAGATGAATAAGGCGTTCAAAAAatcagttgttcgacaaccGAAG
CAAGAGACAAATTCTCGAATACCAGAGCAAGATGATGCTATGGTAACGAC
TAATGACATGAAAGATGGTGTCGTAAGCAGTGGTGATGTACAACTGGTTc
atttgctgaaaaatttactGGTCAAGGAGCTTGGCAACTCTACAGACGAG
AGaacaatttcaacaagaacgaACAAATCCTTGACGAGCAATCCTCAACC
AAACAGTAGACCGAAACAAAATGCGAATACGAAGAAAGCAGAAAGTAAAA
CGACGAACGTTCAAACAAGGCTGATGAAGAAAAAACCGACCAAATCATCT
CGCGAGATGACCAAGTCTAAAGGCTTATcgacaaaaacaacaaatacaGC
CTGGAAATGAACAGAACGAGTTCCGGTCTCCATATCTCAAGAAGTAGACA
AACtcctacaaaaagaaaaaccacCGCCCTCTTCGTCTCAAAACACGCCC
AAAAAACAATCAATAAAGATGAATAAGGCGTTCAAAAAatcagttgttcg
acaaccGAAGCAAGAGACAAATTCTCGAATACCAGAGCAAGATGATGCTA
TGGTAACGACTAATGACATGAAAGATGGTGTCGTAAGCAGTGGTGATGTA
CAACTGGTTcatttgctgaaaaatttactGGTCAAGGAGCTTGGCAACTC
TACAGACGAGAGaacaatttcaacaagaacgaACAAATCCTTGACGAGCA
ATCCTCAACCAAACAGTAGACCGAAACAAAATGCGAATACGAAGAAAGCA
GAAAGTAAAACGACGAACGTTCAAACAAGGCTGATGAAGAAAAAACCGAC
CAAATCATCTCGCGAGATGACCAAGTCTAAAGGCTTATcgacaaaaacaa
caaatacaGCCTGGAAATGAACAGAACGAGTTCCGGTCTCCATATCTCAA
GAAGTAGACAAACtcctacaaaaagaaaaaccacCGCCCTCTTCGTCTCA
AAACACGCCCAAAAAACAATCAATAAAGATGAATAAGGCGTTCAAAAAat
cagttgttcgacaaccGAAGCAAGAGACAAATTCTCGAATACCAGAGCAA
GATGATGCTATGGTAACGACTAATGACATGAAAGATGGTGTCGTAAGCAG
TGGTGATGTACAACTGGTTcatttgctgaaaaatttactGGTCAAGGAGC
TTGGCAACTCTACAGACGAGAGaacaatttcaacaagaacgaACAAATCC
TTGACGAGCAATCCTCAACCAAACAGTAGACCGAAACAAAATGCGAATAC
GAAGAAAGCAGAAAGTAAAACGACGAACGTTCAAACAAGGCTGATGAAGA
AAAAACCGACCAAATCATCTCGCGAGATGACCAAGTCTAAAGGCTTATcg
acaaaaacaacaaatacaGCCTGGAAATGAACAGAACGAGTTCCGGTCTC
CATATCTCAAGAAGTAGACAAACtcctacaaaaagaaaaaccacCGCCCT
CTTCGTCTCAAAACACGCCCAAAAAACAATCAATAAAGATGAATAAGGCG
TTCAAAAAatcagttgttcgacaaccGAAGCAAGAGACAAATTCTCGAAT
ACCAGAGCAAGATGATGCTATGGTAACGACTAATGACATGAAAGATGGTG
TCGTAAGCAGTGGTGATGTACAACTGGTTcatttgctgaaaaatttactG
GTCAAGGAGCTTGGCAACTCTACAGACGAGAGaacaatttcaacaagaac
gaACAAATCCTTGACGAGCAATCCTCAACCAAACAGTAGACCGAAACAAA
ATGCGAATACGAAGAAAGCAGAAAGTAAAACGACGAACGTTCAAACAAGG
CTGATGAAGAAAAAACCGACCAAATCATCTCGCGAGATGACCAAGTCTAA
AGGCTTATcgacaaaaacaacaaatacaGCCTGGAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022884XLOC_022884Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038257-exon-sc0001811-1491911889:25307..25462TCONS_00038257-exon-sc0001811-1491911889:25307..25462Clytia hemisphaericaexon
TCONS_00038257-exon-sc0001811-1510915933:25307..25462TCONS_00038257-exon-sc0001811-1510915933:25307..25462Clytia hemisphaericaexon
TCONS_00038257-exon-sc0001811-1575043694:25307..25462TCONS_00038257-exon-sc0001811-1575043694:25307..25462Clytia hemisphaericaexon
TCONS_00038257-exon-sc0001811-1491911889:26349..26467TCONS_00038257-exon-sc0001811-1491911889:26349..26467Clytia hemisphaericaexon
TCONS_00038257-exon-sc0001811-1510915933:26349..26467TCONS_00038257-exon-sc0001811-1510915933:26349..26467Clytia hemisphaericaexon
TCONS_00038257-exon-sc0001811-1575043694:26349..26467TCONS_00038257-exon-sc0001811-1575043694:26349..26467Clytia hemisphaericaexon
TCONS_00038257-exon-sc0001811-1491911889:27020..27152TCONS_00038257-exon-sc0001811-1491911889:27020..27152Clytia hemisphaericaexon
TCONS_00038257-exon-sc0001811-1510915933:27020..27152TCONS_00038257-exon-sc0001811-1510915933:27020..27152Clytia hemisphaericaexon
TCONS_00038257-exon-sc0001811-1575043694:27020..27152TCONS_00038257-exon-sc0001811-1575043694:27020..27152Clytia hemisphaericaexon
TCONS_00038257-exon-sc0001811-1491911889:27933..28153TCONS_00038257-exon-sc0001811-1491911889:27933..28153Clytia hemisphaericaexon
TCONS_00038257-exon-sc0001811-1510915933:27933..28153TCONS_00038257-exon-sc0001811-1510915933:27933..28153Clytia hemisphaericaexon
TCONS_00038257-exon-sc0001811-1575043694:27933..28153TCONS_00038257-exon-sc0001811-1575043694:27933..28153Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038257-proteinTCONS_00038257-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001811supercontigsc0001811:25307..28153 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
25.7382	22.6059	12.1635	14.9759	9.25452	7.34988	6.09742	8.2674	3.64018	5.04425	3.4226	5.14971	5.82581	6.00182	5.54434	6.39013	9.05725	10.1128	9.39764	6.50706	6.60096	5.19967	18.542	14.5388	11.7715	10.7733	1.65214	1.6992	11.7978	12.9573
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038257 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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