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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038250 ID=TCONS_00038250|Name=TCONS_00038250|organism=Clytia hemisphaerica|type=transcript|length=1342bp
GAACAATTTTTTATGATTGCTGGTAATTGATCCattcattttgactttat
tttcaaattcgTTCTTCATTTTAACTGGTAAAAGGAAGTATccgttcttt
taaaaattggaaaaaatctctTTGTTGTTTTGGAAAGATCAAAGACTGTT
CAACATTGCCTTTCCTGCAAGCAGCGATTCAGTTTTCAGGTGTCAGGGAA
GTATCTTTGCTATCTTTGTATGAACTCATTTTCCCATCACAGGTTTGAGT
ATTCACTAATTTACTAATACCTGTCATACCTGCTGTGCCTGTGTTGaaac
ttaaaattaaaatttttaagtaTTAAAATCTCCCAAATAGATAATTGAAT
TATTTTCGTCGTAAACAACACTTTATTTAATCTAATACTTTTTGCTTCTG
ACAAAAATTATGTCACATGAATCAAgaaaatttccattgggactagaaaa
ttttggtcaaaatgtttgttttttcaattctgtCATTCAAGTTTTATATT
CGGTTAAAAGCTTTCGGGAATTTGTGTATCAATTTGAAACCAATATTGGC
AATTCAGGAAAGTTAGCAATCAAAGACTTATTTTCCTCTATCACATCATC
TGCCTTACCTATTATTCCTTCTTTTGACCTTGGGCCAAGTTATAATGAAT
ATAATCACAGCCGATTCCAACAATTTGACGCTCATGAATGTGTGACATAT
ATTCTCAATCAAATTTTTGCATCACAACAAAATAGCTCATCTGGagaatc
tattttcaaaacaactaGCATACAGTCAATATTATGTCAAAGTTGTTCCA
CTGCATCAGAGATGAATGTGTTTGATCAAATATTCTCTATTGAATTCACT
GATCGTTTTAATCATAAttcaattgaaaatgaaatttccagGCTGGTCAG
TGACCCACATGGAGAGTTGCTTGAAAGTCTGTATAACTGTGAAAATTGCC
TTACTCAAACAAGGGCTACAAAGTGTAAACAATTATTAACATATCTGACT
ATTTCATTATATCACTGGTTTTATTTCGCCATGATCGTGCTTCAAACACT
TCGAGAAAATTTGTCCCTAACCTACACgttgaaaattcttttgaaaatgt
atTGCTAGGTAAGCTAAATTTGCATGCTGTAGTCTTTTATTGTAGTCTCA
GTAGTGGTCATTATACTTCCGCTGTAAAATATGAGGAGAAATGGTATAGG
GTCAATGATGCGATAGTCTCAAATATTCAAAACCCCAATTTCAACTGTCA
ATGATAACATTGCTCCTTACATTCTTATCTATAAAAAATCCAACCATAAA
GGAAGTGAAATCTCCTTATCAACCAATAATCAAAACTTAGGT Run BLAST on NCBI protein sequence of TCONS_00038250-protein >TCONS_00038250-protein ID=TCONS_00038250-protein|Name=TCONS_00038250-protein|organism=Clytia hemisphaerica|type=polypeptide|length=232bp
MSHESRKFPLGLENFGQNVCFFNSVIQVLYSVKSFREFVYQFETNIGNSG
KLAIKDLFSSITSSALPIIPSFDLGPSYNEYNHSRFQQFDAHECVTYILN
QIFASQQNSSSGESIFKTTSIQSILCQSCSTASEMNVFDQIFSIEFTDRF
NHNSIENEISRLVSDPHGELLESLYNCENCLTQTRATKCKQLLTYLTISL
YHWFYFAMIVLQTLRENLSLTYTLKILLKMYC Run BLAST on NCBI transcript from alignment at sc0001810:40..1381 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038250 ID=TCONS_00038250|Name=TCONS_00038250|organism=Clytia hemisphaerica|type=transcript|length=1342bp|location=Sequence derived from alignment at sc0001810:40..1381 (Clytia hemisphaerica)
ACCTAAGTTTTGATTATTGGTTGATAAGGAGATTTCACTTCCTTTATGGT
TGGATTTTTTATAGATAAGAATGTAAGGAGCAATGTTATCATTGACAGTT
GAAATTGGGGTTTTGAATATTTGAGACTATCGCATCATTGACCCTATACC
ATTTCTCCTCATATTTTACAGCGGAAGTATAATGACCACTACTGAGACTA
CAATAAAAGACTACAGCATGCAAATTTAGCTTACCTAGCAatacattttc
aaaagaattttcaacGTGTAGGTTAGGGACAAATTTTCTCGAAGTGTTTG
AAGCACGATCATGGCGAAATAAAACCAGTGATATAATGAAATAGTCAGAT
ATGTTAATAATTGTTTACACTTTGTAGCCCTTGTTTGAGTAAGGCAATTT
TCACAGTTATACAGACTTTCAAGCAACTCTCCATGTGGGTCACTGACCAG
CctggaaatttcattttcaattgaaTTATGATTAAAACGATCAGTGAATT
CAATAGAGAATATTTGATCAAACACATTCATCTCTGATGCAGTGGAACAA
CTTTGACATAATATTGACTGTATGCtagttgttttgaaaatagattctCC
AGATGAGCTATTTTGTTGTGATGCAAAAATTTGATTGAGAATATATGTCA
CACATTCATGAGCGTCAAATTGTTGGAATCGGCTGTGATTATATTCATTA
TAACTTGGCCCAAGGTCAAAAGAAGGAATAATAGGTAAGGCAGATGATGT
GATAGAGGAAAATAAGTCTTTGATTGCTAACTTTCCTGAATTGCCAATAT
TGGTTTCAAATTGATACACAAATTCCCGAAAGCTTTTAACCGAATATAAA
ACTTGAATGacagaattgaaaaaacaaacattttgaccaaaattttctag
tcccaatggaaattttcTTGATTCATGTGACATAATTTTTGTCAGAAGCA
AAAAGTATTAGATTAAATAAAGTGTTGTTTACGACGAAAATAATTCAATT
ATCTATTTGGGAGATTTTAAtacttaaaaattttaattttaagtttCAAC
ACAGGCACAGCAGGTATGACAGGTATTAGTAAATTAGTGAATACTCAAAC
CTGTGATGGGAAAATGAGTTCATACAAAGATAGCAAAGATACTTCCCTGA
CACCTGAAAACTGAATCGCTGCTTGCAGGAAAGGCAATGTTGAACAGTCT
TTGATCTTTCCAAAACAACAAagagattttttccaatttttaaaagaacg
gATACTTCCTTTTACCAGTTAAAATGAAGAAcgaatttgaaaataaagtc
aaaatgaatGGATCAATTACCAGCAATCATAAAAAATTGTTC Coding sequence (CDS) from alignment at sc0001810:40..1381 >TCONS_00038250 ID=TCONS_00038250|Name=TCONS_00038250|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at sc0001810:40..1381 (Clytia hemisphaerica)
CTAGCAatacattttcaaaagaattttcaacGTGTAGGTTAGGGACAAAT
TTTCTCGAAGTGTTTGAAGCACGATCATGGCGAAATAAAACCAGTGATAT
AATGAAATAGTCAGATATGTTAATAATTGTTTACACTTTGTAGCCCTTGT
TTGAGTAAGGCAATTTTCACAGTTATACAGACTTTCAAGCAACTCTCCAT
GTGGGTCACTGACCAGCctggaaatttcattttcaattgaaTTATGATTA
AAACGATCAGTGAATTCAATAGAGAATATTTGATCAAACACATTCATCTC
TGATGCAGTGGAACAACTTTGACATAATATTGACTGTATGCtagttgttt
tgaaaatagattctCCAGATGAGCTATTTTGTTGTGATGCAAAAATTTGA
TTGAGAATATATGTCACACATTCATGAGCGTCAAATTGTTGGAATCGGCT
GTGATTATATTCATTATAACTTGGCCCAAGGTCAAAAGAAGGAATAATAG
GTAAGGCAGATGATGTGATAGAGGAAAATAAGTCTTTGATTGCTAACTTT
CCTGAATTGCCAATATTGGTTTCAAATTGATACACAAATTCCCGAAAGCT
TTTAACCGAATATAAAACTTGAATGacagaattgaaaaaacaaacatttt
gaccaaaattttctagtcccaatggaaattttcTTGATTCATGTGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038250-exon-sc0001810-1491911889:40..1381 | TCONS_00038250-exon-sc0001810-1491911889:40..1381 | Clytia hemisphaerica | exon |
| TCONS_00038250-exon-sc0001810-1510915933:40..1381 | TCONS_00038250-exon-sc0001810-1510915933:40..1381 | Clytia hemisphaerica | exon |
| TCONS_00038250-exon-sc0001810-1575043694:40..1381 | TCONS_00038250-exon-sc0001810-1575043694:40..1381 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001810 | supercontig | sc0001810:40..1381 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0016579 | protein deubiquitination |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0036459 | thiol-dependent ubiquitinyl hydrolase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0016579 |
protein deubiquitination |
| molecular_function |
GO:0036459 |
thiol-dependent ubiquitinyl hydrolase activity |
Blast
The following BLAST results are available for this feature:
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