TCONS_00038240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038240
Unique NameTCONS_00038240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038240 ID=TCONS_00038240|Name=TCONS_00038240|organism=Clytia hemisphaerica|type=transcript|length=792bp
gctgaaatgaaaaaaaaaactcacagtccatagtgtttgcaatctgaata
ctccattcctaaaattgaatgaGTTATGAATAGGAAAAGATAACAAATCA
ACTGGTTCTGATAACTGATGTTACAAGATTTTCCATCTTCTCTtgcctct
caaatcaaaacaaaagacaaccaaaaatgagccaacaaattttgcATATG
CAGAGAACCATGAAGAAAAGCCACATATATATACACAAAGAAGAGACTCA
TCAAataagaaacaagaaacaaaacatctattcaaataaaaatttccact
aGAAGTCAGCCATTTTTCTTCCAATCACTCACTCCTCAAAAATCTAAACA
ACACCATCTGCGACTTTGACGGAAGTTTTCATTTCTCATTTCACGAATTT
CTCAAAGttcattcatttctacaacGCCGAAATCTGGCGTTGTAAGATTG
GGGCTTCAGCTTAGCCTTTTTTTCCTTCCTGGGGTTTCGCTCCAGTCAGG
CTTtcagcccttgccgccgacaaatttttttcctacgcttacctaactcc
tacgctcacttctcccgcgtgataccgttccagcccgactggcgtgccag
tctacggatcgcccaaagttaccttcgtatttttattggcccagcgctaa
gcgtaggcctttcatttgcaatttcatttcataaaatCTCCGCCCAATCT
AATATTGGTTACCGCCCTCACTCGGATAGTAAATCTAGGACATCGTCCTA
AACTACCCCTCTTAGCTTTCAACTcgcaaaacaagatggcgg
Run BLAST on NCBI

transcript from alignment at sc0001809:2015..2806

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038240 ID=TCONS_00038240|Name=TCONS_00038240|organism=Clytia hemisphaerica|type=transcript|length=792bp|location=Sequence derived from alignment at sc0001809:2015..2806 (Clytia hemisphaerica)
ccgccatcttgttttgcgAGTTGAAAGCTAAGAGGGGTAGTTTAGGACGA
TGTCCTAGATTTACTATCCGAGTGAGGGCGGTAACCAATATTAGATTGGG
CGGAGattttatgaaatgaaattgcaaatgaaaggcctacgcttagcgct
gggccaataaaaatacgaaggtaactttgggcgatccgtagactggcacg
ccagtcgggctggaacggtatcacgcgggagaagtgagcgtaggagttag
gtaagcgtaggaaaaaaatttgtcggcggcaagggctgaAAGCCTGACTG
GAGCGAAACCCCAGGAAGGAAAAAAAGGCTAAGCTGAAGCCCCAATCTTA
CAACGCCAGATTTCGGCgttgtagaaatgaatgaaCTTTGAGAAATTCGT
GAAATGAGAAATGAAAACTTCCGTCAAAGTCGCAGATGGTGTTGTTTAGA
TTTTTGAGGAGTGAGTGATTGGAAGAAAAATGGCTGACTTCtagtggaaa
tttttatttgaatagatgttttgtttcttgtttcttatTTGATGAGTCTC
TTCTTTGTGTATATATATGTGGCTTTTCTTCATGGTTCTCTGCATATgca
aaatttgttggctcatttttggttgtcttttgttttgatttgagaggcaA
GAGAAGATGGAAAATCTTGTAACATCAGTTATCAGAACCAGTTGATTTGT
TATCTTTTCCTATTCATAACtcattcaattttaggaatggagtattcaga
ttgcaaacactatggactgtgagttttttttttcatttcagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022868XLOC_022868Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038240-exon-sc0001809-1491911889:2015..2806TCONS_00038240-exon-sc0001809-1491911889:2015..2806Clytia hemisphaericaexon
TCONS_00038240-exon-sc0001809-1510915933:2015..2806TCONS_00038240-exon-sc0001809-1510915933:2015..2806Clytia hemisphaericaexon
TCONS_00038240-exon-sc0001809-1575043694:2015..2806TCONS_00038240-exon-sc0001809-1575043694:2015..2806Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001809supercontigsc0001809:2015..2806 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.2833	2.43302	3.23306	3.67898	16.4835	15.3249	6.98967	10.0011	5.23258	5.73679	6.03838	5.06897	8.0727	6.62145	7.35927	6.93444	6.19038	9.14331	8.1435	6.88949	7.18829	7.05114	3.5363	4.16153	4.99843	9.72597	9.17852	9.30923	5.34355	4.69515
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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