TCONS_00038228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038228
Unique NameTCONS_00038228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length328

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038228 ID=TCONS_00038228|Name=TCONS_00038228|organism=Clytia hemisphaerica|type=transcript|length=328bp
ggaaAAAGTTTATAACAATAATAAATTGAAATACGTTGGTTATCTTGGTT
TGAATTCGAATAGTAAAATCTGGCGATTACTGCTTATCCTATAAATCGCA
AGTGAATTGCCTCCTTTCACGGCACGTGAGACAATAGCGTTGGCACTATA
ATGGCATTATTGAAACCATGGTGTTTTCGTTTCGAAATAGAATCGTTTCG
CAACACATTGGTTTACACCTCTGGATTCTTACTCGATCGTCAAGATGTTT
TCAATCATTTGTTGTCAGCACTGACATTTGATTTTATAATTGGAAAGATA
AATTTCAAGCAATAAAATACCACTTTCT
Run BLAST on NCBI

transcript from alignment at sc0001802:26208..26979+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038228 ID=TCONS_00038228|Name=TCONS_00038228|organism=Clytia hemisphaerica|type=transcript|length=772bp|location=Sequence derived from alignment at sc0001802:26208..26979+ (Clytia hemisphaerica)
ggaaAAAGTTTATAACAATAATAAATTGAAATACGTTGGTTATCTTGGTT
TGAATTCGAATAGTAAAATCTGGCGATTACTGGTAAGTAGCTTTTTTATC
TACTGGATCAATCAGCACCAACGTTAAAGACGTAATTGTTTTCGAAGTCC
CAAAGTAACCCAGATTCGCGTTTTTTAATTTCACAAGTATACATACGTCT
GACTCTAAACAAACTGTTCTATATGTACTTCCCTACCTCTTTTATAGCTT
ATCCTATAAATCGCAAGTGAATTGCCTCCTTTCACGGCACGTGAGACAAT
AGCGTTGGCACTATAATGGCATTATTGAAACCATGGTGTTTTCGTTTCGA
AATAGGTAAGATTTCTAGAAATCACTATGAATCTGTATGAATGaaacgag
gggtaaatcacttccGAAAAGTGTACgagattgaaaatttctaaagttta
gtttttttttgattttattttggaaaagcGTACAAGATTCTTtctagtga
tttacccctcgaaatgaaaaataaaattgcaagtaatggaagaaattttg
aGACTGTTGGCTAAGATActtcattttatatattttggaAGCTTTGCTGA
TTTTGAGTTTATTATTCAATTGCTTTCATTACAGAATCGTTTCGCAACAC
ATTGGTTTACACCTCTGGATTCTTACTCGATCGTCAAGATGTTTTCAATC
ATTTGTTGTCAGCACTGACATTTGATTTTATAATTGGAAAGATAAATTTC
AAGCAATAAAATACCACTTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022856XLOC_022856Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038228-exon-sc0001802-1491911889:26208..26289TCONS_00038228-exon-sc0001802-1491911889:26208..26289Clytia hemisphaericaexon
TCONS_00038228-exon-sc0001802-1510915933:26208..26289TCONS_00038228-exon-sc0001802-1510915933:26208..26289Clytia hemisphaericaexon
TCONS_00038228-exon-sc0001802-1575043694:26208..26289TCONS_00038228-exon-sc0001802-1575043694:26208..26289Clytia hemisphaericaexon
TCONS_00038228-exon-sc0001802-1491911889:26455..26562TCONS_00038228-exon-sc0001802-1491911889:26455..26562Clytia hemisphaericaexon
TCONS_00038228-exon-sc0001802-1510915933:26455..26562TCONS_00038228-exon-sc0001802-1510915933:26455..26562Clytia hemisphaericaexon
TCONS_00038228-exon-sc0001802-1575043694:26455..26562TCONS_00038228-exon-sc0001802-1575043694:26455..26562Clytia hemisphaericaexon
TCONS_00038228-exon-sc0001802-1491911889:26842..26979TCONS_00038228-exon-sc0001802-1491911889:26842..26979Clytia hemisphaericaexon
TCONS_00038228-exon-sc0001802-1510915933:26842..26979TCONS_00038228-exon-sc0001802-1510915933:26842..26979Clytia hemisphaericaexon
TCONS_00038228-exon-sc0001802-1575043694:26842..26979TCONS_00038228-exon-sc0001802-1575043694:26842..26979Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001802supercontigsc0001802:26208..26979 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	1.2561	1.86706	0.302036	0	0.594811	0.617717	0.507847	0	0.223798	0.458771	0	0	0.576479	0	0	0	0	0	0	0	0.66178	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top