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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038226 ID=TCONS_00038226|Name=TCONS_00038226|organism=Clytia hemisphaerica|type=transcript|length=2976bp
CAAGAAGATAGAGGAGACAGGTAGAAAGATTTCAATAGTCGCAGCAAAGA
AGTTGGATAAAGTGGACAaatttgattcaatttttcgAGGGAGAAAAAGA
TGCCTCAGAAAACACAACAAGTACAGCATGCTGGTTTGGTCATCTCAATG
AATGTTGGTTTATTGAGTGAATGGGATAATTGGAAACCATTTCCAAAAGG
AATTCCATCACGATGGCTTTTAATGGGTGGTGCAGTCGATCCACCAAAGG
AAATTCAAATCTCCAAACGTCGACCAAGAAAAATTACCACTGTTGCTAGA
GCTGGACAATTCTTACCAGGAGTACAACAAGATCTGGGAAATATGAGTGC
TGcattattgaaaaacaaactACTACTCCACAActatatttttgatatga
aaatcACTAAAGAGAGAGCGCTGGAAGGCATCAAAGATCTTTTCCAGAAC
TGCATGAATCAATCACCAAAAGCAGCTCCGGTCATTTATTATTCTGGACA
TGGTGAAATGGACACAGGTAATTGGTGTTTTCAAAATCTCCAATTAGGAA
TCAGAGAGATTGTGGCTTTAATACCAAAAGGATGTTACGAACCGTTGATC
ATTTCAGATTCGTGTTTCAGTGGTTGTTGGGCAGATTACTGTATTAACCA
GACTGGGAATGTCCATGTCTTGGCAGCTTGTTCATATGACCAGACAGCTC
TGGATGACAAGGATGGTGGCCAGTTTACTCAATACATTACTGGGCAGATT
CCAAAGAGAAAGTTGAGTGTAAAACCTGTTTATGGCTTTCCTGGAGGAAA
GAATCCAAAACAAAAGAGTGGCAAGGCAATCCAATCCGTCCCAAATAGAA
GCCAACAGGAGATAATAGCCAGGACAGGCTTGGTTGCTAGAGCCTCTGAT
GGACCCTCTATTCCAACAGAATGTGATAACTTTGTAGATTTGGTCAAAGC
TCAGCTGAAGAGCAACCCAAGTCGTGTGTTAGTGTCATTTGATGTATGGC
TTGATGAAAAGATGTCTGCTCTATTTGCTGATTTGGAAACAGGGTCGAAA
AGACCAGATTGGGACTTTATAAAGTATGAATCGCCTATTGCTTTTTCTTC
TGGAGTAACGAAAATGATAAGCAAAGGATTTCAGATCGAAGAGATGATTG
AAACGAAAGATAAGAAACGATATGTGTATTTTACAAAATCCACTGCCGAT
AGGCAATACAGTtggcaaaataaaaacaatcgatTTACCAATAGAAATAT
CGTCCGAAAGATATTTTCCTTTGAGGATACGGATGTCCAAGGAACCCACC
AATGTTTGACAGAACAGGCTGAGAAAGGTTATACACCTTTTTCAATCAAG
TCTGATTATTTCCAGAAAACCTATATTAGTTTCGCCCAGGCAACGCCTAC
TACTAAGTCAAATTATCATATATTGATGGGTGTAgtaaaaagataaaatt
aacattgacattttggtattattattaaaattttcactttatttttatgG
TAACTTCATtgttaaaactattttatggtaattttgaaatcataattttt
aaaaaacattatgATTTTGAAAGTGTTTTTATATTTAAGAAAGGCTTGTA
CAGACGTTAAAGTTAAATTACACAGCGTTTAAGCTGCTAtccaagtaaac
aaaaaaatatcctacaatccTGGCCAAAAGTAAATGGAATTCCACTTATT
CTACTGTTTTATGGCTCTTCTCCCCGTCCCCCTCTCTAAATTGTTACTGA
GTCAAGTTGGACTGAAATTCAACATTGTATAAGGGGGGGGATGAAAGGGG
GACTTGTGAATTCATACCAAAAAATGAGGAATTCCATTACTTTTGCCCAG
TATTGTAATTTATAACCATCTTCTTCAACAGCAGGGTGGAGTCAGTTGTA
GAATACCAAATATCGTTTAAGGATATATGGCATTACATTAAAAGGAATGT
TAGAGTCGTGGATACTAAAAATACTGAGATACTGTAGGTGATACAGGAAG
AGAAATTTGCTACTTTTGTTTTActtcatttattgaattttttccataat
ttttttccaaattttaggaaaCCTTTGCTAAATTCAAAAATAGGACCATC
TCGGGGTAACGTTGTCAATTGCgcagaaaataaaaattatgattCCAAAA
AATTACCATTTTTATAGAATGTTTCACAGCATCGGTATAATTAAAAAAGC
AGCTTCCCAAAATGTCGTGGTATGATAAAAGTTCCTGAAAACTTTAAAGA
CATTATAGACATTATATcttacctctggcgatataacttaagtttctagc
ggagggagggactatattagtgtttagtagtattttgtagtatatgttcg
tactcttaggtgccaaataaacgggggggttcgaataaacgggggggttg
gaaaaaaatttcaaatcaaataaacgggggggNGGGAGGGACTATATTAG
TGTTTAGTAGTATTTTGtagtatatgttcgtagtgtaccctgtgtttatg
tttcaataaaataaaaaaaagacattaTAGTACTGAACAAAAAACCcaat
caatatttttctttgttcatCCTGACGAATTCTACAAATGAATACCTTAA
TTAGATAAGGTTAGTCTCCTTAGTAACAACGAATTCGTTGGCATCATTAA
TATTTCCTAATAAACTCTTATAAAACCCCTTAAACACGAACTTTCATTGC
GTTTAAAAAATACATTGTTTATGACCGACCCAAATATATTTGATTCGGCC
TGTAGGGCAGAGGGTCTAATACTTGAAAACTAACTGAGTGTCTCGATATA
TCGAACAGTCCCCCCTGGCCGTTCGAAATATTTCAGACTCGACTGAATCA
CAATTTTCAATCTGATAATGGCAATTTACATTAACAAAGTccgatttttt
ttgtcattttattgattttttttcatagatttttcgTTAGTGTTAATAGA
CCTATTTGGGATTAtagaaatgaaag Run BLAST on NCBI protein sequence of TCONS_00038226-protein >TCONS_00038226-protein ID=TCONS_00038226-protein|Name=TCONS_00038226-protein|organism=Clytia hemisphaerica|type=polypeptide|length=448bp
MPQKTQQVQHAGLVISMNVGLLSEWDNWKPFPKGIPSRWLLMGGAVDPPK
EIQISKRRPRKITTVARAGQFLPGVQQDLGNMSAALLKNKLLLHNYIFDM
KITKERALEGIKDLFQNCMNQSPKAAPVIYYSGHGEMDTGNWCFQNLQLG
IREIVALIPKGCYEPLIISDSCFSGCWADYCINQTGNVHVLAACSYDQTA
LDDKDGGQFTQYITGQIPKRKLSVKPVYGFPGGKNPKQKSGKAIQSVPNR
SQQEIIARTGLVARASDGPSIPTECDNFVDLVKAQLKSNPSRVLVSFDVW
LDEKMSALFADLETGSKRPDWDFIKYESPIAFSSGVTKMISKGFQIEEMI
ETKDKKRYVYFTKSTADRQYSWQNKNNRFTNRNIVRKIFSFEDTDVQGTH
QCLTEQAEKGYTPFSIKSDYFQKTYISFAQATPTTKSNYHILMGVVKR Run BLAST on NCBI transcript from alignment at sc0001801:43096..46071 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038226 ID=TCONS_00038226|Name=TCONS_00038226|organism=Clytia hemisphaerica|type=transcript|length=2976bp|location=Sequence derived from alignment at sc0001801:43096..46071 (Clytia hemisphaerica)
ctttcatttctaTAATCCCAAATAGGTCTATTAACACTAAcgaaaaatct
atgaaaaaaaatcaataaaatgacaaaaaaaatcggACTTTGTTAATGTA
AATTGCCATTATCAGATTGAAAATTGTGATTCAGTCGAGTCTGAAATATT
TCGAACGGCCAGGGGGGACTGTTCGATATATCGAGACACTCAGTTAGTTT
TCAAGTATTAGACCCTCTGCCCTACAGGCCGAATCAAATATATTTGGGTC
GGTCATAAACAATGTATTTTTTAAACGCAATGAAAGTTCGTGTTTAAGGG
GTTTTATAAGAGTTTATTAGGAAATATTAATGATGCCAACGAATTCGTTG
TTACTAAGGAGACTAACCTTATCTAATTAAGGTATTCATTTGTAGAATTC
GTCAGGatgaacaaagaaaaatattgattgGGTTTTTTGTTCAGTACTAt
aatgtcttttttttattttattgaaacataaacacagggtacactacgaa
catatactaCAAAATACTACTAAACACTAATATAGTCCCTCCCNcccccc
cgtttatttgatttgaaatttttttccaacccccccgtttattcgaaccc
ccccgtttatttggcacctaagagtacgaacatatactacaaaatactac
taaacactaatatagtccctccctccgctagaaacttaagttatatcgcc
agaggtaagATATAATGTCTATAATGTCTTTAAAGTTTTCAGGAACTTTT
ATCATACCACGACATTTTGGGAAGCTGCTTTTTTAATTATACCGATGCTG
TGAAACATTCTATAAAAATGGTAATTTTTTGGaatcataatttttatttt
ctgcGCAATTGACAACGTTACCCCGAGATGGTCCTATTTTTGAATTTAGC
AAAGGtttcctaaaatttggaaaaaaattatggaaaaaattcaataaatg
aagTAAAACAAAAGTAGCAAATTTCTCTTCCTGTATCACCTACAGTATCT
CAGTATTTTTAGTATCCACGACTCTAACATTCCTTTTAATGTAATGCCAT
ATATCCTTAAACGATATTTGGTATTCTACAACTGACTCCACCCTGCTGTT
GAAGAAGATGGTTATAAATTACAATACTGGGCAAAAGTAATGGAATTCCT
CATTTTTTGGTATGAATTCACAAGTCCCCCTTTCATCCCCCCCCTTATAC
AATGTTGAATTTCAGTCCAACTTGACTCAGTAACAATTTAGAGAGGGGGA
CGGGGAGAAGAGCCATAAAACAGTAGAATAAGTGGAATTCCATTTACTTT
TGGCCAggattgtaggatatttttttgtttacttggaTAGCAGCTTAAAC
GCTGTGTAATTTAACTTTAACGTCTGTACAAGCCTTTCTTAAATATAAAA
ACACTTTCAAAATcataatgttttttaaaaattatgatttcaaaattacc
ataaaatagttttaacaATGAAGTTACcataaaaataaagtgaaaatttt
aataataataccaaaatgtcaatgttaattttatctttttacTACACCCA
TCAATATATGATAATTTGACTTAGTAGTAGGCGTTGCCTGGGCGAAACTA
ATATAGGTTTTCTGGAAATAATCAGACTTGATTGAAAAAGGTGTATAACC
TTTCTCAGCCTGTTCTGTCAAACATTGGTGGGTTCCTTGGACATCCGTAT
CCTCAAAGGAAAATATCTTTCGGACGATATTTCTATTGGTAAatcgattg
tttttattttgccaACTGTATTGCCTATCGGCAGTGGATTTTGTAAAATA
CACATATCGTTTCTTATCTTTCGTTTCAATCATCTCTTCGATCTGAAATC
CTTTGCTTATCATTTTCGTTACTCCAGAAGAAAAAGCAATAGGCGATTCA
TACTTTATAAAGTCCCAATCTGGTCTTTTCGACCCTGTTTCCAAATCAGC
AAATAGAGCAGACATCTTTTCATCAAGCCATACATCAAATGACACTAACA
CACGACTTGGGTTGCTCTTCAGCTGAGCTTTGACCAAATCTACAAAGTTA
TCACATTCTGTTGGAATAGAGGGTCCATCAGAGGCTCTAGCAACCAAGCC
TGTCCTGGCTATTATCTCCTGTTGGCTTCTATTTGGGACGGATTGGATTG
CCTTGCCACTCTTTTGTTTTGGATTCTTTCCTCCAGGAAAGCCATAAACA
GGTTTTACACTCAACTTTCTCTTTGGAATCTGCCCAGTAATGTATTGAGT
AAACTGGCCACCATCCTTGTCATCCAGAGCTGTCTGGTCATATGAACAAG
CTGCCAAGACATGGACATTCCCAGTCTGGTTAATACAGTAATCTGCCCAA
CAACCACTGAAACACGAATCTGAAATGATCAACGGTTCGTAACATCCTTT
TGGTATTAAAGCCACAATCTCTCTGATTCCTAATTGGAGATTTTGAAAAC
ACCAATTACCTGTGTCCATTTCACCATGTCCAGAATAATAAATGACCGGA
GCTGCTTTTGGTGATTGATTCATGCAGTTCTGGAAAAGATCTTTGATGCC
TTCCAGCGCTCTCTCTTTAGTgattttcatatcaaaaatatagTTGTGGA
GTAGTagtttgtttttcaataatgCAGCACTCATATTTCCCAGATCTTGT
TGTACTCCTGGTAAGAATTGTCCAGCTCTAGCAACAGTGGTAATTTTTCT
TGGTCGACGTTTGGAGATTTGAATTTCCTTTGGTGGATCGACTGCACCAC
CCATTAAAAGCCATCGTGATGGAATTCCTTTTGGAAATGGTTTCCAATTA
TCCCATTCACTCAATAAACCAACATTCATTGAGATGACCAAACCAGCATG
CTGTACTTGTTGTGTTTTCTGAGGCATCTTTTTCTCCCTcgaaaaattga
atcaaattTGTCCACTTTATCCAACTTCTTTGCTGCGACTATTGAAATCT
TTCTACCTGTCTCCTCTATCTTCTTG Coding sequence (CDS) from alignment at sc0001801:43096..46071 >TCONS_00038226 ID=TCONS_00038226|Name=TCONS_00038226|organism=Clytia hemisphaerica|type=CDS|length=1347bp|location=Sequence derived from alignment at sc0001801:43096..46071 (Clytia hemisphaerica)
ttatctttttacTACACCCATCAATATATGATAATTTGACTTAGTAGTAG
GCGTTGCCTGGGCGAAACTAATATAGGTTTTCTGGAAATAATCAGACTTG
ATTGAAAAAGGTGTATAACCTTTCTCAGCCTGTTCTGTCAAACATTGGTG
GGTTCCTTGGACATCCGTATCCTCAAAGGAAAATATCTTTCGGACGATAT
TTCTATTGGTAAatcgattgtttttattttgccaACTGTATTGCCTATCG
GCAGTGGATTTTGTAAAATACACATATCGTTTCTTATCTTTCGTTTCAAT
CATCTCTTCGATCTGAAATCCTTTGCTTATCATTTTCGTTACTCCAGAAG
AAAAAGCAATAGGCGATTCATACTTTATAAAGTCCCAATCTGGTCTTTTC
GACCCTGTTTCCAAATCAGCAAATAGAGCAGACATCTTTTCATCAAGCCA
TACATCAAATGACACTAACACACGACTTGGGTTGCTCTTCAGCTGAGCTT
TGACCAAATCTACAAAGTTATCACATTCTGTTGGAATAGAGGGTCCATCA
GAGGCTCTAGCAACCAAGCCTGTCCTGGCTATTATCTCCTGTTGGCTTCT
ATTTGGGACGGATTGGATTGCCTTGCCACTCTTTTGTTTTGGATTCTTTC
CTCCAGGAAAGCCATAAACAGGTTTTACACTCAACTTTCTCTTTGGAATC
TGCCCAGTAATGTATTGAGTAAACTGGCCACCATCCTTGTCATCCAGAGC
TGTCTGGTCATATGAACAAGCTGCCAAGACATGGACATTCCCAGTCTGGT
TAATACAGTAATCTGCCCAACAACCACTGAAACACGAATCTGAAATGATC
AACGGTTCGTAACATCCTTTTGGTATTAAAGCCACAATCTCTCTGATTCC
TAATTGGAGATTTTGAAAACACCAATTACCTGTGTCCATTTCACCATGTC
CAGAATAATAAATGACCGGAGCTGCTTTTGGTGATTGATTCATGCAGTTC
TGGAAAAGATCTTTGATGCCTTCCAGCGCTCTCTCTTTAGTgattttcat
atcaaaaatatagTTGTGGAGTAGTagtttgtttttcaataatgCAGCAC
TCATATTTCCCAGATCTTGTTGTACTCCTGGTAAGAATTGTCCAGCTCTA
GCAACAGTGGTAATTTTTCTTGGTCGACGTTTGGAGATTTGAATTTCCTT
TGGTGGATCGACTGCACCACCCATTAAAAGCCATCGTGATGGAATTCCTT
TTGGAAATGGTTTCCAATTATCCCATTCACTCAATAAACCAACATTCATT
GAGATGACCAAACCAGCATGCTGTACTTGTTGTGTTTTCTGAGGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038226-exon-sc0001801-1491911889:43096..46071 | TCONS_00038226-exon-sc0001801-1491911889:43096..46071 | Clytia hemisphaerica | exon |
| TCONS_00038226-exon-sc0001801-1510915933:43096..46071 | TCONS_00038226-exon-sc0001801-1510915933:43096..46071 | Clytia hemisphaerica | exon |
| TCONS_00038226-exon-sc0001801-1575043694:43096..46071 | TCONS_00038226-exon-sc0001801-1575043694:43096..46071 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001801 | supercontig | sc0001801:43096..46071 . |
Blast
The following BLAST results are available for this feature:
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