TCONS_00038209 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038209
Unique NameTCONS_00038209
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038209 ID=TCONS_00038209|Name=TCONS_00038209|organism=Clytia hemisphaerica|type=transcript|length=568bp
cgcaGATTTTGCTTATTGCTCAGAGCAATCTCAGAAGATCATTTCAGGAT
AATCATGAGAAATTTCTAGAGGACCACCATGCCATTTCCTTAACTTTTTC
AGGAAGAAAATTGAGATGCCTTTGCTGCAAGGTTTTCCAAAACATCCAGA
AATGAAACTAGCCAATCAGAAGAAAGAGATTTCTGAAGAGTTAATCAGGA
ACAGTCTGGAAGACAGACGAGTTTGTTTGGACTAATCATTGTTGTCGCTA
ACAGGAGAAACCCCTGGAAAAGAGACCCACAAAATAGAAGATATGGACAC
AAAACCAGGGGTCAATCAACAAGTcgaatctttttttaattcaaaactaA
CTTTTATTCGATGAAAAGTCTTAGCCCCTTGAATATCAAATTAAAGAGAG
TTAGTTGTAACAGTTTTTACATGCTCCCCTTTTTGGGGGCCAAAAGCTTT
TATACCTTGGGTTTACCTTGCAAGTTTGAGTGATCCTTTTTACTTGCATT
CATTTAGTATAGGGCTTAAATAATTTTACAAATTACAGGCAAATAGATTA
TTCAGTGTGGTAAGAAAT
Run BLAST on NCBI

transcript from alignment at sc0001798:26327..26894

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038209 ID=TCONS_00038209|Name=TCONS_00038209|organism=Clytia hemisphaerica|type=transcript|length=568bp|location=Sequence derived from alignment at sc0001798:26327..26894 (Clytia hemisphaerica)
ATTTCTTACCACACTGAATAATCTATTTGCCTGTAATTTGTAAAATTATT
TAAGCCCTATACTAAATGAATGCAAGTAAAAAGGATCACTCAAACTTGCA
AGGTAAACCCAAGGTATAAAAGCTTTTGGCCCCCAAAAAGGGGAGCATGT
AAAAACTGTTACAACTAACTCTCTTTAATTTGATATTCAAGGGGCTAAGA
CTTTTCATCGAATAAAAGTtagttttgaattaaaaaaagattcgACTTGT
TGATTGACCCCTGGTTTTGTGTCCATATCTTCTATTTTGTGGGTCTCTTT
TCCAGGGGTTTCTCCTGTTAGCGACAACAATGATTAGTCCAAACAAACTC
GTCTGTCTTCCAGACTGTTCCTGATTAACTCTTCAGAAATCTCTTTCTTC
TGATTGGCTAGTTTCATTTCTGGATGTTTTGGAAAACCTTGCAGCAAAGG
CATCTCAATTTTCTTCCTGAAAAAGTTAAGGAAATGGCATGGTGGTCCTC
TAGAAATTTCTCATGATTATCCTGAAATGATCTTCTGAGATTGCTCTGAG
CAATAAGCAAAATCtgcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022839XLOC_022839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038209-exon-sc0001798-1491911889:26327..26894TCONS_00038209-exon-sc0001798-1491911889:26327..26894Clytia hemisphaericaexon
TCONS_00038209-exon-sc0001798-1510915933:26327..26894TCONS_00038209-exon-sc0001798-1510915933:26327..26894Clytia hemisphaericaexon
TCONS_00038209-exon-sc0001798-1575043694:26327..26894TCONS_00038209-exon-sc0001798-1575043694:26327..26894Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001798supercontigsc0001798:26327..26894 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.296471	0.385475	0.559467	0.328411	0.932886	0.421245	0.127054	0.713676	0.249831	0.103152	0.500609	0.658161	0.197174	0.819068	0.168346	0.361323	0.519307	0.68435	1.05052	0.329788	0.382194	0	0.113309	0.515074	1.59154	1.70449	0.948549	0.289234	0.438747	0.67052
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038209 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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