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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038200 ID=TCONS_00038200|Name=TCONS_00038200|organism=Clytia hemisphaerica|type=transcript|length=2349bpRun BLAST on NCBI transcript from alignment at sc0001796:19845..40424+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00038200 ID=TCONS_00038200|Name=TCONS_00038200|organism=Clytia hemisphaerica|type=transcript|length=20580bp|location=Sequence derived from alignment at sc0001796:19845..40424+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00038200 vs. Swiss-Prot (Human)
Match: MANBA (Beta-mannosidase OS=Homo sapiens GN=MANBA PE=2 SV=3) HSP 1 Score: 479.174 bits (1232), Expect = 1.592e-155 Identity = 251/578 (43.43%), Postives = 346/578 (59.86%), Query Frame = 3
Query: 357 WLLENNRLNISLPTEIPGGNKKGLSVHTTLMXXXXXXXXXXGFNDVKFAWIADESWTFKTSFNLKEKLFDYPFMRLTFEGIDTVASIFVNGKCIAKSSNMFASLSVPVHSLLISNNILEVKFESPTLYAKNQSDLYLNKFGYKIPPVVAPPAQHGRDHPNFIRKEQCSFSWDWGPSVPTIGIWQPAYLEMSDTVFLDKIKVSTFLQNGT--WTL----IYEIIVESFVKQQIHILYQFLNSEWNEVHDVVEGVQLIKLSPIVVKDESVNKWWPTGYGGQYLYTAIVDV-YDSSLSVPAIHKEVKFGFRTVELVEEPIENSEGLSFYFKINGQPIFLKGANWIPADSFQEDVTDYRLEELMTSAKMANINALRVWGGGIYEKDKFYQLADEQGILIWQDLMFAVALYPVNEEFLQSVSQEISYQTRRLHHHPSIIAWSGNNENEAAIAQSWWDEVKTNRERLTTDYGKLYADTIKPIIESEDKTRPYFLSSPSNGNENVAEKYIAKNPQDERFGDVHFYDYKKDCWDPDTFPKPRFASEYGYQSYPSFQLLEEVSWKMKDQLYWNSSLMFHRQHHANGN 2069
W + N ++ LP +PG VH+ L +I + FND+ + W++ ++WT+ F + ++ + + L EG+DTV+ I N I ++ NMF S + +++ N +E++F+S LYA QS + Y++PP P Q G H NF+RKEQCSFSWDWGPS PT GIW+ +E + L+ S W L ++++ V Q+ + L ++ ++ G ++++L + K+ +V WWP G+G Q Y V D L+ I K K FRTVEL+EEPI+ S GLSFYFKING PIFLKG+NWIPADSFQ+ VT L L+ S AN+N LRVWGGGIYE+D+FY+L DE GI++WQD MFA ALYP ++ FL SV+ E++YQ +RL HPSII WSGNNENE A+ +W+ T+R DY LY I+ ++ + DK+RP+ SSP+NG E VAE ++++NP FGDVHFYDY DCW+ FPK RFASEYGYQS+PSF LE+VS + +NS HRQHH GN
Sbjct: 29 WSICNGNGSLELPGAVPG------CVHSALFQQGLIQDSYYRFNDLNYRWVSLDNWTYSKEFKIPFEISKWQKVNLILEGVDTVSKILFNEVTIGETDNMFNRYSFDITNVVRDVNSIELRFQSAVLYAAQQSKAHTR---YQVPPDCPPLVQKGECHVNFVRKEQCSFSWDWGPSFPTQGIWKDVRIEAYNICHLNYFTFSPIYDKSAQEWNLEIESTFDVVSSKPVGGQVIVAIPKLQTQQTYSIELQPGKRIVELFVNISKNITVETWWPHGHGNQTGYNMTVLFELDGGLN---IEKSAKVYFRTVELIEEPIKGSPGLSFYFKINGFPIFLKGSNWIPADSFQDRVTSELLRLLLQSVVDANMNTLRVWGGGIYEQDEFYELCDELGIMVWQDFMFACALYPTDQGFLDSVTAEVAYQIKRLKSHPSIIIWSGNNENEEALMMNWYHISFTDRPIYIKDYVTLYVKNIRELVLAGDKSRPFITSSPTNGAETVAEAWVSQNPNSNYFGDVHFYDYISDCWNWKVFPKARFASEYGYQSWPSFSTLEKVS--STEDWSFNSKFSLHRQHHEGGN 592 The following BLAST results are available for this feature:
BLAST of TCONS_00038200 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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