TCONS_00038197 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038197
Unique NameTCONS_00038197
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length935

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038197 ID=TCONS_00038197|Name=TCONS_00038197|organism=Clytia hemisphaerica|type=transcript|length=935bp
TGGGATTTAAGCTTAACGATAACCAAATCTTTAATGAACTTTGAAATtaa
tttcttattcttttacttttttagcaaatttaaaaaaagaaaaacactgg
TACGAAAAATATGAATTgaaagtacacgtttttataagaatcgacAAATT
TGAGCTGAAGGCTAGACTGATCTTTTGGTGATTTTCAGGGTTGATTTGAC
TTACGATAATTATTTCCTCTGAAACCTGAGACTAcgattgtttttgaatt
gttctAAAGTTTTTGTCAAGATTGAACCTCATACTCgttttgaattgttc
ttataaaaaaccgtgtaCTTCAATCAGAATGTCATCGATGCAGTTTGGTT
GACGAAAAAATGGCTTGGAATGTTGAACTTGAAAAACAATTGGCGAATGT
CATTGTGAAGGAGTTGGATTCAAATGATGCTGTCACAAGCCATGATTCTT
CCACCAATGGCCTCATCAATCATTTCAAAACACATCGTAAATAAAGTGTA
AATAGAGTCTTAACTGAATAATTTTGTTAAAGCCTTGTTTACATCGAGTG
TAATGATTACGGAGTCCTGTTTTAGAGCTTCATATGGTCTACTAGAATTT
TAACACAAACCAATCgaatttgatttatttatttttttacaatactAGTG
TAGTGATATTATTCAATtactttattcatgatatgcaccactgcaatgtc
ttctgacattacgtcatggacccaatagctgattggttgcaaatgacgta
aaatcaatcaatacgtcactttcaaccaatcagctgttgtgtccgtggaa
gacattgcaatggtgcatatcatgaattacctCATGACTTGTTCTGATCT
TGCACTTTAGCAAAGAAAACTGTAACCCTGATGATTTGTTActctaaatt
ttaatttttacaacATGTTCAGCATTGGACAAAGG
Run BLAST on NCBI

transcript from alignment at sc0001795:23648..28557-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038197 ID=TCONS_00038197|Name=TCONS_00038197|organism=Clytia hemisphaerica|type=transcript|length=4910bp|location=Sequence derived from alignment at sc0001795:23648..28557- (Clytia hemisphaerica)
TGGGATTTAAGCTTAACGATAACCAAATCTTTAATGAACTTTGAAATTAA
TTTCTTATTCTTTTACTTTTTTAGCAAATTTAAAAAAAGAAAAACACTGG
TACGAAAAATATGAATTGAAAGTACACGTTTTTATAAGAATCGACAAATT
TGAGCTGAAGGCTAGACTGATCTTTTGGTGATTTTCAGGGTTGATTTGAC
TTACGATAATTATTTCCTCTGAAACCTGAGACTACGATTGTTTTTGAATT
GTTCTAAAGTTTTTGTCAAGATTGAACCTCATACTCGTTTTGAATTGTTC
TTATAAAAAACCGTGTACTTCAATCAGAATGTCATCGATGCAGTTTGGTT
GACGAAAAAATGGCTTGGAAGTAAGTTCAAATAGCATAATAATTTTTCAC
ACAACTTTACACAGGGAATATGACATAAACTAAAGAATTTACATTAAACT
CTCTACAACTCGAACTTTTATTACCCAACTAAATAAAGCACTTTTCCCCA
ATTTCTCAAAAAAGACAACAAATTAAGTTACCAAGCATTTCTTAAATCTA
CATCTTAATACGCTTCTTTTGACGTATAAATGACCATGCCTAATGCTCCC
AGCTCTCAGTTTCCTTTTTGGACGAGTAATCATCTTTCCGTGCGAGAGAG
CCAAAGTGACATAAAGTCTGGGAAACAATACACCTAACAACCCTTATAAG
CATTTGTAAAGGTCCTAGTCCTCTAGTTATGTTTGAAATTTCGAAATAAG
GTCTACAGGTTTGATACAGTATCCCTTAGTATTTTTCGTATTTCTTTAAG
AAAACTGAATAAAATTTCCTATTTTCATCATAGCATAAGATAAAAATAGC
TTTCCAACGAGCCCTCGTTTAGCCTTCTAGCATGATTAGAACTCAAGTTA
TGCCCCTATTTCTACTTTTCGGCCTCTCCAGCCCACTGCGCCGCGATCAG
CTTTTGCGGAGACTGGTAATGATTTGTTTTTTATTATATAGTAAAAAAGT
CTCTGACACAGGACTTCGGAGAGAAAAGAATAAGGGGACAAAAGTGTCCC
CCCGCCGAAGAGTGCAATTAGTGGTAATAGTGCAATTAACGATTAATCGC
ACTCCTTTAAACCAATCAGATTCGAGTAATTTTGCACGGCTGACGATTAC
ACGCATAATAACAAACTCCAGTCTACGGCCTAGTCGAACATAAAACTGGA
CAAAGTTTCACGTGAAATTTGCGAGCCGTTAGTTTACCTAGTGTGTAAAG
GAATGTGAGATTTGTGCTGGCCTCTTGTCGATTTGTTCTCGACTTACAAG
AGTTCGAATTATAAAAAGAAAGTAAAATATAGGTACCTATAGGGGAAAAA
ATGTCGCAGTTTTCTCTAGTCGGGAAAAATTTTGTCACCCCCTCAAAATT
TTCGTCACTTTCCCCCGACATTTTTTTCTCCGATAATGTATAGGTATAAG
GTTCATTTATATGATAATACGTTCAGACAGCTGAGACAGTTTGCGTCATT
GGACTTTTCTAAAAGAAAATATTTTCAGTGGTTTTTATTCGACCCCCCCC
CCCCCTTCCGAATGTAACTTTTAGCCTAGAGCTAGACATTAGAGCCATTT
TCTCAACCATCCACACCAAGACAATTTCCGAACCATCCTACCTTTTGAGT
AGAAGAAGCCGTGACCTCGATTCTTGGAGGGTTTAGTTCAAAGTTCAAGA
GGCCAGGATATCATTTTAATTCTGATCGGTGATCGGTCGGATATAATTGA
ATACAATCAACTTCAGTTGAGCTCGGATCTGACATTGTCTGTCTGTCTGT
CTGTCTGTCACAAAAACTTTGAAAATGTTCGGATTTGTTTGTATATATCT
GTTTTTTTTTCATTTTTCAAATGTTTTGTTTTTGGGGGGCTGAGGCTTTT
TTTGATTTTCGAGGCCTGAGCACTTCTTTTGGTTTGTTTGGCCTATGAAT
AATTTGAAGCCACTGAAGTTGAGCTATCTTAGTGTCAAGAACAAGTTCAG
ATTGTCCTTTTTGTGGTCATACACGTTTTTTTTATAAGAACAAACTATAA
AAACAAAACACCCTATTTCTTAGGAAAATGGACAAAAATTCTCACAAAAT
GGTCAAAATAAGAACTTATAAAGAACATTTTTAGGCCTAAAACTCAAAAA
GTTAAGAACATTCGAAGGTTTCAAAAACTTTGGATGTTCTTATAAAAAAA
AGAAGTGTAATCTATTTTGAAATACGAGATCTGAAATTTCCCTTGTTATT
TATTAATGTTATTTAAAAAGTGTTCTACCATGAAATTTCTCTATGTACAT
CCGTAATAAGAGAAACTACAACGAACGAATTATCAAAGTTGATCACGGAT
CATTCACTCCGTTGATATTTTCCATGAATGGTGGAATGGGTGTAGAGGCT
GAGCACTTCTTTGGAGCGCTAGCTAATCTACTAGCTGATAAGACAGATTT
TCACGCGTCTCAAACCAAAAATTGGATCAGAACAAAAATTTCGTTTGCTT
TAACGAGATCAGTCGTAACATGTATTTGCGGCACACGAACACTAAAACCA
AACCTTAGGTTTGATGAGATTGATTTATTAAATAACAATATTTTGAAATG
TTAGCTTTTCATAGATTTTAGTACTTAATTTTTTCACCGCATTGATCAAC
CATTACTTCTGTTTCTGCTTTTGAGTTTGGCATGACCCGCTAGGTTGTGC
TATTTCGACAGTTTTTCGATTTAGTTTTCAGTTTTGTTTGTGTCGTGATT
TCAATTTTTTTTTCTTTATTTAACTTTGAATTTCCTAGCTCTACGTATTT
TAAGCAATTTATATATTGTAACGTTTTAATTCAATATTTAATTACTATTA
TAGAATATTTCTCCTATTTAATACAAAAAAAAAAAAAAAAAAATGTACAT
CCGTAATGAAGGGTAAAGAAGAGAGAGTTAATACACAGGAGTTGTTGATA
TGTTGTCCCGGGGGGGGGGCAGTGGGTTTACCAACTGACGGTATGTGCGN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGTGCATTTTTTC
AAATTTTAAACTCTTTTAGAGCAAAAAAAATCAACATTTTCGAGCAAAAA
TTTGCAATTTTTCCCAGATTTGCTGAAATTTCCACCTCTACATAGCCTGG
ATATCCAGGCTGTAAATTATTTCACAGTCTAGTTTTAGATATTTTATGTT
CTGATTTACAGCCTGGTCTCCCTAGAGCGATTTGCATTCTATTTAAGAGA
ATGCAGTCCGCTTGCTTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATACCTGT
CGGTCAATTTTCTTAACCCCCCCCCCCCCCCGGGTATGTTGTTTAGGTTT
ACACAATCGTTTGATGCCTTTTTTATACGTACGAGGGCACCTAGGGATAT
AAATCAATGCATCTAATTTGAATAAAATGCCTGGGGGGGGCACTGGGTTT
GCGGACTGACGGTATGTGCGGGCCAGAAATTGGCTTTTAAAATCGCACCC
TTACAGTGCAGCAAAAATCAGTGAAAATCATACCCTTAGAGTGCATTTTC
CCCCAAATTTTCGATCCCTTTCGTGCAAAAAATGGTCAAAATTCTAGCAT
TTTTGGTCAAAATATCTAGATTTTTCAAGAATTTTCTGAAATTTCTACCC
TTACAGTGCATTTTAAACATAATATTGGAAAAGGTACCCTTAGGACCCGC
ACATACCCGTCGGTCCTTTTGCCCAGCTGCCCCCCCCCCCGGGATAAAAT
GTTCTCTCAATTTCCTTAGTGTATAGTAAAGCTATACACTACAAAGCTAT
ACAATACACTAAGGAAATTGAGAGAACATTTATTCATTGACTGCAACACA
TTAGAATTATTTTATGGGAGTCAGTACTAGTAGCTTTGTATAAAGCATAA
AGTTTTGAAGTTCTCATGAAACGCGTGTTCTTATTTTTTCTCCAGTGTTG
AACTTGAAAAACAATTGGCGAATGTCATTGTGAAGGAGTTGGATTCAAAT
GATGCTGTCACAAGCCATGATTCTTCCACCAATGGCCTCATCAATCATTT
CAAAACACATCGTAAATAAAGTGTAAATAGAGTCTTAACTGAATAATTTT
GTTAAAGCCTTGTTTACATCGAGTGTAATGATTACGGAGTCCTGTTTTAG
AGCTTCATATGGTCTACTAGAATTTTAACACAAACCAATCGAATTTGATT
TATTTATTTTTTTACAATACTAGTGTAGTGATATTATTCAATTACTTTAT
TCATGATATGCACCACTGCAATGTCTTCTGACATTACGTCATGGACCCAA
TAGCTGATTGGTTGCAAATGACGTAAAATCAATCAATACGTCACTTTCAA
CCAATCAGCTGTTGTGTCCGTGGAAGACATTGCAATGGTGCATATCATGA
ATTACCTCATGACTTGTTCTGATCTTGCACTTTAGCAAAGAAAACTGTAA
CCCTGATGATTTGTTACTCTAAATTTTAATTTTTACAACATGTTCAGCAT
TGGACAAAGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022829XLOC_022829Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038197-exon-sc0001795-1575043694:28188..28557TCONS_00038197-exon-sc0001795-1575043694:28188..28557Clytia hemisphaericaexon
TCONS_00038197-exon-sc0001795-1575043694:23648..24212TCONS_00038197-exon-sc0001795-1575043694:23648..24212Clytia hemisphaericaexon
TCONS_00038197-exon-sc0001795-1510915933:28188..28557TCONS_00038197-exon-sc0001795-1510915933:28188..28557Clytia hemisphaericaexon
TCONS_00038197-exon-sc0001795-1510915933:23648..24212TCONS_00038197-exon-sc0001795-1510915933:23648..24212Clytia hemisphaericaexon
TCONS_00038197-exon-sc0001795-1491911889:28188..28557TCONS_00038197-exon-sc0001795-1491911889:28188..28557Clytia hemisphaericaexon
TCONS_00038197-exon-sc0001795-1491911889:23648..24212TCONS_00038197-exon-sc0001795-1491911889:23648..24212Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001795supercontigsc0001795:23648..28557 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.7321	13.0608	11.0772	10.1766	16.9163	12.8997	25.7548	25.8608	15.4099	16.0289	13.7273	9.64687	11.0929	9.44503	6.72911	9.14954	16.1266	18.6744	11.0237	12.4309	18.5749	16.2567	13.303	13.082	43.178	55.1354	12.2148	11.5309	18.7663	17.9974
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038197 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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