TCONS_00038196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038196
Unique NameTCONS_00038196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038196 ID=TCONS_00038196|Name=TCONS_00038196|organism=Clytia hemisphaerica|type=transcript|length=656bp
AAGACTTTTTATTATTTCCCTCtagtagaaataaataaaagaaaacaaaa
atacaatcaaaatgGCAGACATTGATTGGTCAGATCCAGAAAAATCCATC
GAAGGAATCAAGAAATTAATCAAAGCTGTTCCCGATTTCCCGAAAAAAGG
GATCTTATACCGGTTTAGATGCAAGAGATTTTCTCATGGCACCGATGATT
GCAATCAAATTGAACGTCCCGTTCATACCGGTCCGTAAAAAAGGCAAGCT
ACCCGGAGAATGTATTTCAGCGGAATCCGTCAAAGAATACGGCAAGAGAG
GTCCAATGACGCCAAACTTGCCACCGCATGAAGCCAACGAACGTCTAATT
ACATATCAGGTATAAATTCTTCTCTTTTCcatcaaatatatttttatgtt
CTATTATTTTAAGGGAGAAGCTTTCCCAGTTTTGAACTACCAAATTGTAA
AATATCaacatacagttgacgctctctaattcgatctttaaggggaattg
gattttcattgaataagggagcttatcgaataatagagtgTTGTTAATGA
GAAATTCTTGACGATGGTGACTTAGGATATTATCGAAtaagtactagtta
tcgcatgactttgagtgcaatacgagaaatattttacgagttccgagatt
tttccg
Run BLAST on NCBI

transcript from alignment at sc0001795:13886..23411-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038196 ID=TCONS_00038196|Name=TCONS_00038196|organism=Clytia hemisphaerica|type=transcript|length=9526bp|location=Sequence derived from alignment at sc0001795:13886..23411- (Clytia hemisphaerica)
AAGACTTTTTATTATTTCCCTCTAGTAGAAATAAATAAAAGAAAACAAAA
ATACAATCAAAATGGCAGACATTGATTGGTCAGATCCAGAAAAATCCATC
GAAGGAATCAAGAAATTAATCAAAGCTGTTCCCGATTTCCCGAAAAAAGG
GATCTTATACCGGTAAGGAAAAAATTACTTTAGGCGTACAAACTTTCGCG
AGCAGAAACTTTCGCGATTTATTTATATTTCGCGTTAAATTCGCGAAAGT
AAATATCGTGAATTTTTATCGATTTTTCGTCCTCGCGAAAGTTTCCGCTC
GCGAAAGTTTGTACGCCTAAAGTAAATGACATTGAGCTGTTTTATTAAAT
TTCCATTCAGGGGGGGGGTTGGACGAACCTTTTGCAAGTCAAAAATGTTT
CTTAGAAATATTTGGATACCCCCTGGGAAATGGAAAATTTGCCAACGGAA
AAAATCTTTTCGTATCAGTGAGGGAGGGATGTGGTCTCAGTGCAGCACAC
TTGACAAGGTTTGGAACGAAGAATGAATTCAATTGACGTGAATGTCTTTA
GCGTTCAAACTGAATGAAAATAAATTAAGACTAATAAATATTTGATTGAC
AAAATTAAAGTAGAAATTAAATAGATGACAATAAGACTTGAATAAATTGA
CCTAACTTAAATTAATCGTATTTTTAGAAGATGAAAATCAGAAATAAACA
TAATTTAGATAAAACTAGCCTAAACTATCCTAACCTTAGTGGTCACTGAC
AAAGAAGTGAGAAGCCTGTGCCAAAAGGGCAGATGTGAAAGTCTAGCAAA
GTTGAGCCAACTGAAGTCCACAAAAGAAAACAGAAAAGGACAAAAGCTTA
CCGGCTGGCCCAATGTGAATTACTGTGATGAGTGACCAGGTTGTGTATAA
CCAACTGGGTTAAACACATGAAAATGACTGAAAAGTCTGAGTGAAATATC
AACACTCAACCAACATGCAAAATAGTAAAATTTGATATGAAAGTTCTCTT
CACAACCTTACTGTAAAAGCTCTCAACATTGAATGAAAATTGAATGCAAT
AAATGAGAAAAAACTGAGGAGAAAATTGCTCCCTAATTATAAAGTCATTA
AAGTGAGAAAAAGTATCTAGAGTAATTATAAAACAAAAGAAAATAAATCT
AAAGTGTGAATGACATATAAATTAATTGACAGTAAAATTAAACAAACAAA
TGAAATTTTTAATTGATTTTTAAGTTTTATATTTTTTTTGTAGGAACACT
TTCTGTATTCAAGTGTTCACATGACACTCCCCCAAGGAGATTGAAAATTT
CATTAAAAGTTTAGGGCAACAAACAAACCAGATTCAACAAATCATTAACA
TTTTTCGGCCAATTCTTCCAATAAATCGAACTCGTCAACTGAACGAATCA
AAACCAACTCTCGAACAGAGCGAAACGTTTCACGATGGGTACTCTCAGTA
GAATTACAATAACGAACCATGACTTTTCGACAAACATTATCTTTACCGAT
TTCAACCTTTGATACGATGCCAAACTGGTACGTTTTCGATAGTGATGTGT
CGTTTTTCTTGAAAAGGACTATGTCTCCAATCTGAAATTGATAACTATTT
TTGAACCACCTCTGAGTCATAAGTCGAGGCACGTGATTCAACAACCATGA
TTCAAACCAAACATTGTAAATAGCTTCGTTCGATCTCATCAATTTTGAAG
GATTACTGGAAAGCATCATGTCGCCAACAGGACTTCTTTCATTATTACGT
CCCAGAAGAAGGCGATTGGGTGTAATTAGATCGAGATTTTCAACATTTGT
CTTGCTTTGGACGCAGATTGGAAGATCATTTATGGAGAATTCGATGGCTT
TGTCACGATGGAGTCTTGATTGTAGATCTTTGAAATCCAAGGTCATGTTG
GTGCAGCCTTTTATTAATTGACTTCCTCCATCGCAGTAGAGTTTCTTTGG
ATACCCGCAATGACATGCAAACCGAGTGAACGAGAGGATGAACGAGTCTG
TCGAGTAGTCAGTCATCCATTACTTTTATTGAGGTTGCTGACGTGGTACA
GCAACAGAAGATGACAAGCCATATCTTCACAGTGGTGCGTTTGTGACTTG
GAGAATACGATAAGTAAGGACCAGAAAGATCTACTTGTGACGCATAAAAG
GCTGGGGCGACTGTTAGATTTGATTCTGATATCGGTCCCATCACGACTTC
GACTGATTTCTTCATTAGAAAGCAACATCTCTGACAACTCTTGCGAATTA
GTTTGACCATAGAACGACATTCGATGATGTATACCTTTTTTAACAAGTAT
CTGATGGTGGTTTCAACTCCTGTGTGTTGACAAACTGGATGGTTCCAATG
TAGATCAAGAGCAATACTGTAGGCGATTGGCGAATTATTGCTGAGAACAG
GTACACAAAACGTGTCATTTGATAGATCTTTCATTGTTGAAGTGAATTTC
CCAACGATTGAAACTTCGTCTGATGGAAGAATTCGACCAATGTAGAATTC
CATTTTTTTGCTGGGTAATTCTGTCATATTTTTGAGGCTGGACGAACTGG
AAGACTTCTCTCGTACCGACTTTGAAGAAGTAACTTTCTGCTTCATTGAT
CTCGTCGTCTGACAAGTTTGGTTGATATGTTGTAGATTGTTTTCTCCGTA
TAATTTTGCAAAATCTGATGACGTAGGCGATGATTCGAACAACCTTCGTG
AAGGAGTGACGATTTGGATCGACAATATAATCTGAAAAAGCATGGTAGTC
TTTGACAGCATCGTTGACTTTGGAGGTGTGTGATTCAAATGAACTGACAC
TGAGTTTGACTTCGTCAGGATTCATGATTGGAAATTGTGATTGATCGAGT
TGCATCCAAGGATGACCATTGATCCATTTTGAGTTGGAATCGATGTCCTT
GATGCATGATCCTCTTCGTGTGCCAAGATCAGCAAGATTTTCATTGGACT
GAATGTAGAACCATTGACATGTTGTTGTGAACCGGAGAATTTCAATGACT
CTATTCCTGACCCATTGCTCTAAGGGTTTTTGGTCATTGGTGATCCAAAA
TAAACTTGCCTGGTTATCAGTGAGTTTGATTGAATTCTTATGATGCTTCT
TAAACGATCTTCGAACGACTTCTCCTGTGTAGGTGTTCAGTAATGCAGCA
TAAGTTCTGCCCTTGGTAATGACATCCCTTTTGGTACAACACGTGATCTG
GCCAGAACCAATTGACATGATGAGTTTCCTGATCTTCTCTTGAAACGTGC
ATAAATACAAGAACATACCATGGTTTTGCTGGCGTCACCAAAGTCTAGTG
TCTCTACATCTAAGTTGATTGCATCCTCAGGAATGACGACTCGTTGATAC
CTAAGGGTATTGAGTTCTTGCATCATCTCGAAGTGCGTTTCCCANTGGTT
GATATGTTGTAGATTGTTTTCTCCGTATAATTTTGCAAAATCTGATGACG
TAGGCGATGATTCGAACAACCTTCGTGAAGGAGTGACGATTTGGATCGAC
AATATAATCTGAAAAAGCATGGTAGTCTTTGACAGCATCGTTGACTTTGG
AGGTGTGTGATTCAAATGAACTGACACTGAGTTTGACTTCGTCAGGATTC
ATGATTGGAAATTGTGATTGATCGAGTTGCATCCAAGGATGACCATTGAT
CCATTTTGAGTTGGAATCGATGTCCTTGATGCATGATCCTCTTCGTGTGC
CAAGATCAGCAAGATTTTCATTGGACTGAATGTAGAACCATTGACATGTT
GTTGTGAACCGGAGAATTTCAATGACTCTATTCCTGACCCATTGCTCTAA
GGGTTTTTGGTCATTGGTGATCCAAAATAAACTTGCCTGGTTATCAGTGA
GTTTGATTGAATTCTTATGATGCTTCTTAAACGATCTTCGAACGACTTCT
CCTGTGTAGGTGTTCAGTAATGCAGCATAAGTTCTGCCCTTGGTAATGAC
ATCCCTTTTGGTACAACACGTGATCTGGCCAGAACCAATTGACATGATGA
GTTTCCTGATCTTCTCTTGAAACGTGCATAAATACAAGAACATACCATGG
TTTTGCTGGCGTCACCAAAGTCTAGTGTCTCTACATCTAAGTTGATTGCA
TCCTCAGGAATGACGACTCGTTGATACCTAAGGGTATTGAGTTCTTGCAT
CATCTCGAAGTGCGTTTCCCACAATGGTCTGAGCTCATCTGGTATCTTGT
CATCCCAGTCGAGGTTTAAGTGAACAAGTTCTTGCAGATCCATCTTCATA
GCACTGACGATTGGTGTCACCTTTCCTGTTAAATCGAAGATCTCTGCTAC
CTTGGATGAACAATGTCTGCGAGTGAGTTTGGAAGGTATGATGTTGACGG
TGTTTAATGGCTTCTTGCCACGACATTTCTTGGCGAAATTGAGTTGGCCA
ATGTTGAGTGCTAGTGTATCGTCTTTGGGAAACCATCTCATTCCAGCAAC
GTGTATGGTCTCTCCATCGTCTGTGAGCTTCTCCAAGGGTTCTTTGCCTG
AAAACGAAACACCTTTCAATTGGAATCCTCCTTTGTTGATGACGATTTCT
AGATCATCAGCTAGATTGTGAGCTTCAGTGATTGATTGTGCACCANNNNN
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AGTCATTAAAGTGAGAAAAAGTATCTAGAGTAATTATAAAACAAAAGAAA
ATAAATCTAAAGTGTGAATGACATATAAATTAATTGACAGTTAAATTAAA
CAAACAAATGAAATTTTTAATTGATTTTTAAGTTTTATATTTCTTTTGTA
GGAACACTTTCTGTATTCAAGTGTTCACATGACAAGGGAAGACGAACTTA
AATCATTCTTTTACCAACTAAATTTTTACAAAACTTTTTACCTCCTGGAA
ATTCTTCTCGCGGGTTACCATCTGGAAATGTTCGTTCACCCTCTGTATTA
GTCCGAATCGCAGACCTCTACAAAACCCCAGGTAGTATATCTATAAGGAG
CACGAATCCGTTAGTGGATGCCAGCAGCCTACCTCTGTATGGATATAAAA
TATAATGCATTCTTATTTGGGCTGCAAAGTTAATAATTTTAATACTTGAA
TGCGTGAATGATGTAAACGTTGCTTTAACGAAAAATACGGCAATTTTCTA
AAATCTTGTTTCATTTCTGCTTGCTAGGAATTTTAAGGTACAGAATCAAT
TTTTTGGAGTTTTCTAACATTATTGCTTGATAAAGGCTAAAATGCTCTCT
ATAATTCGAAGAAAAGTCTTTGAAGTCCCATGAATATCGAATTAAAGAGA
GGCAACTGTAGTTTTTTTTGTATTTGTATTTAATTACTTCTGATAGATTC
TCCTTGATTATTGGGGAGTCGAATAAACTTAATTGTAACTTGGGTATAGA
CAGGGATTATTACACGTTTTTTTATTAGAACGTCCAAAGTTTTTGAAGCC
TTTGGATGTTTTTAAGTTTTTCATTTTTAAGCCCTAAAAACGTTCATAAA
ATTATTTTCGTCATTTTGTGAGTTTTTTTTGTGCAATTTTTTAAAAATTG
TGTGTTTTTGAGTTCACAAAACCTTAAAATGTTATTAACTTGTTTTTATT
ATTTGGCCAACGAAGCCTTATGTTATTGAAATAAGCGCATTTGAGAGAAC
TTTTCACATGAAGGGCTTGTGTTGTGTCACCCCAGTTTACAAAATTACAA
GTCTTTATTTTCATCTCAATTCTTCCTATATTTTTCATACAACTTCTTCA
CAGGTTTAGATGCAAGAGATTTTCTCATGGCACCGATGATTGCAATCAAA
TTGAACGTCCCGTTCATACCGGTCCGTAAAAAAGGCAAGCTACCCGGAGA
ATGTATTTCAGCGGAATCCGTCAAAGAATACGGCAAGGTGTGAACAATTT
TTTATTTTTGAGAACCGTTTTTCCTAAACTTTTATCAAAATTTTCGAGAA
TCTTGACCCTTTGAGATGGAAAGTTTAGTGCGATTTGTACTCCGTTGAGG
GACTTTTGAAGTATGAAAAAGGGACTCCGCTCAAGAATCAAGGAAGCTAG
AAAGGACCTTTGAAGGTATACTTTTTCGCTCAGAATTTCATGCTCCATAC
ACGATGATCGCAATTATTTTTGTTAAATTCGACTTTGGAAAAATCGTCAA
TTTTTTACTCATCTTGCGGGTTAGGAGCTTTGCCTGACACGCCAGTTTTT
TTGCCATAAAAGCTTTTGCCAGCCCTAATTCCCGGGGTCCCTCTCTATTC
AAAACTATTCAAAATCCTATCTTCTTTCGAACCAATCACATGCGCTTGCC
TCCCACAAAAAATGCTACGGATTTTAAGACTTGCCTCCCTGCTACAAGAG
TATGTTTCCTAAACTGTCTTCTTATTCAGAATAATAAGCAATCGAAATCT
TATCTGTTATTTATAGAGAGGTCCAATGACGCCAAACTTGCCACCGCATG
AAGCCAACGAACGTCTAATTACATATCAGGTATAAATTCTTCTCTTTTCC
ATCAAATATATTTTTATGTTCTATTATTTTAAGGGAGAAGCTTTCCCAGT
TTTGAACTACCAAATTGTAAAATATCAACATACAGTTGACGCTCTCTAAT
TCGATCTTTAAGGGGAATTGGATTTTCATTGAATAAGGGAGCTTATCGAA
TAATAGAGTGTTGTTAATGAGAAATTCTTGACGATGGTGACTTAGGATAT
TATCGAATAAGTACTAGTTATCGCATGACTTTGAGTGCAATACGAGAAAT
ATTTTACGAGTTCCGAGATTTTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022828XLOC_022828Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038196-exon-sc0001795-1575043694:23250..23411TCONS_00038196-exon-sc0001795-1575043694:23250..23411Clytia hemisphaericaexon
TCONS_00038196-exon-sc0001795-1575043694:14775..14908TCONS_00038196-exon-sc0001795-1575043694:14775..14908Clytia hemisphaericaexon
TCONS_00038196-exon-sc0001795-1575043694:13886..14245TCONS_00038196-exon-sc0001795-1575043694:13886..14245Clytia hemisphaericaexon
TCONS_00038196-exon-sc0001795-1510915933:23250..23411TCONS_00038196-exon-sc0001795-1510915933:23250..23411Clytia hemisphaericaexon
TCONS_00038196-exon-sc0001795-1510915933:14775..14908TCONS_00038196-exon-sc0001795-1510915933:14775..14908Clytia hemisphaericaexon
TCONS_00038196-exon-sc0001795-1510915933:13886..14245TCONS_00038196-exon-sc0001795-1510915933:13886..14245Clytia hemisphaericaexon
TCONS_00038196-exon-sc0001795-1491911889:23250..23411TCONS_00038196-exon-sc0001795-1491911889:23250..23411Clytia hemisphaericaexon
TCONS_00038196-exon-sc0001795-1491911889:14775..14908TCONS_00038196-exon-sc0001795-1491911889:14775..14908Clytia hemisphaericaexon
TCONS_00038196-exon-sc0001795-1491911889:13886..14245TCONS_00038196-exon-sc0001795-1491911889:13886..14245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001795supercontigsc0001795:13886..23411 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26141	0.668548	1.38819	2.54848e-07	2.57267	2.45418	2.27498	4.22163	3.25991	3.06858	3.09543	2.93523	3.48151	4.87569	0.241884	0.601118	0	0.640605	0.471875	0	0.601731	1.54216e-08	0.357534	0.560316	2.99672	5.41519	1.65773	1.60907	0.706479	0.485307
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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