TCONS_00038195 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038195
Unique NameTCONS_00038195
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length605

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038195 ID=TCONS_00038195|Name=TCONS_00038195|organism=Clytia hemisphaerica|type=transcript|length=605bp
caaaaatacaatcaaaatgGCAGACATTGATTGGTCAGATCCAGAAAAAT
CCATCGAAGGAATCAAGAAATTAATCAAAGCTGTTCCCGATTTCCCGAAA
AAAGGGATCTTATACCGATGCAAGAGATTTTCTCATGGCACCGATGATTG
CAATCAAATTGAACGTCCCGTTCATACCGGTCCGTAAAAAAGGCAAGCTA
CCCGGAGAATGTATTTCAGCGGAATCCGTCAAAGAATACGGCAAGAGAGG
TCCAATGACGCCAAACTTGCCACCGCATGAAGCCAACGAACGTCTAATTA
CATATCAGGTATAAATTCTTCTCTTTTCcatcaaatatatttttatgttC
TATTATTTTAAGGGAGAAGCTTTCCCAGTTTTGAACTACCAAATTGTAAA
ATATCaacatacagttgacgctctctaattcgatctttaaggggaattgg
attttcattgaataagggagcttatcgaataatagagtgTTGTTAATGAG
AAATTCTTGACGATGGTGACTTAGGATATTATCGAAtaagtactagttat
cgcatgactttgagtgcaatacgagaaatattttacgagttccgagattt
ttccg
Run BLAST on NCBI

transcript from alignment at sc0001795:13886..23366-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038195 ID=TCONS_00038195|Name=TCONS_00038195|organism=Clytia hemisphaerica|type=transcript|length=9481bp|location=Sequence derived from alignment at sc0001795:13886..23366- (Clytia hemisphaerica)
CAAAAATACAATCAAAATGGCAGACATTGATTGGTCAGATCCAGAAAAAT
CCATCGAAGGAATCAAGAAATTAATCAAAGCTGTTCCCGATTTCCCGAAA
AAAGGGATCTTATACCGGTAAGGAAAAAATTACTTTAGGCGTACAAACTT
TCGCGAGCAGAAACTTTCGCGATTTATTTATATTTCGCGTTAAATTCGCG
AAAGTAAATATCGTGAATTTTTATCGATTTTTCGTCCTCGCGAAAGTTTC
CGCTCGCGAAAGTTTGTACGCCTAAAGTAAATGACATTGAGCTGTTTTAT
TAAATTTCCATTCAGGGGGGGGGTTGGACGAACCTTTTGCAAGTCAAAAA
TGTTTCTTAGAAATATTTGGATACCCCCTGGGAAATGGAAAATTTGCCAA
CGGAAAAAATCTTTTCGTATCAGTGAGGGAGGGATGTGGTCTCAGTGCAG
CACACTTGACAAGGTTTGGAACGAAGAATGAATTCAATTGACGTGAATGT
CTTTAGCGTTCAAACTGAATGAAAATAAATTAAGACTAATAAATATTTGA
TTGACAAAATTAAAGTAGAAATTAAATAGATGACAATAAGACTTGAATAA
ATTGACCTAACTTAAATTAATCGTATTTTTAGAAGATGAAAATCAGAAAT
AAACATAATTTAGATAAAACTAGCCTAAACTATCCTAACCTTAGTGGTCA
CTGACAAAGAAGTGAGAAGCCTGTGCCAAAAGGGCAGATGTGAAAGTCTA
GCAAAGTTGAGCCAACTGAAGTCCACAAAAGAAAACAGAAAAGGACAAAA
GCTTACCGGCTGGCCCAATGTGAATTACTGTGATGAGTGACCAGGTTGTG
TATAACCAACTGGGTTAAACACATGAAAATGACTGAAAAGTCTGAGTGAA
ATATCAACACTCAACCAACATGCAAAATAGTAAAATTTGATATGAAAGTT
CTCTTCACAACCTTACTGTAAAAGCTCTCAACATTGAATGAAAATTGAAT
GCAATAAATGAGAAAAAACTGAGGAGAAAATTGCTCCCTAATTATAAAGT
CATTAAAGTGAGAAAAAGTATCTAGAGTAATTATAAAACAAAAGAAAATA
AATCTAAAGTGTGAATGACATATAAATTAATTGACAGTAAAATTAAACAA
ACAAATGAAATTTTTAATTGATTTTTAAGTTTTATATTTTTTTTGTAGGA
ACACTTTCTGTATTCAAGTGTTCACATGACACTCCCCCAAGGAGATTGAA
AATTTCATTAAAAGTTTAGGGCAACAAACAAACCAGATTCAACAAATCAT
TAACATTTTTCGGCCAATTCTTCCAATAAATCGAACTCGTCAACTGAACG
AATCAAAACCAACTCTCGAACAGAGCGAAACGTTTCACGATGGGTACTCT
CAGTAGAATTACAATAACGAACCATGACTTTTCGACAAACATTATCTTTA
CCGATTTCAACCTTTGATACGATGCCAAACTGGTACGTTTTCGATAGTGA
TGTGTCGTTTTTCTTGAAAAGGACTATGTCTCCAATCTGAAATTGATAAC
TATTTTTGAACCACCTCTGAGTCATAAGTCGAGGCACGTGATTCAACAAC
CATGATTCAAACCAAACATTGTAAATAGCTTCGTTCGATCTCATCAATTT
TGAAGGATTACTGGAAAGCATCATGTCGCCAACAGGACTTCTTTCATTAT
TACGTCCCAGAAGAAGGCGATTGGGTGTAATTAGATCGAGATTTTCAACA
TTTGTCTTGCTTTGGACGCAGATTGGAAGATCATTTATGGAGAATTCGAT
GGCTTTGTCACGATGGAGTCTTGATTGTAGATCTTTGAAATCCAAGGTCA
TGTTGGTGCAGCCTTTTATTAATTGACTTCCTCCATCGCAGTAGAGTTTC
TTTGGATACCCGCAATGACATGCAAACCGAGTGAACGAGAGGATGAACGA
GTCTGTCGAGTAGTCAGTCATCCATTACTTTTATTGAGGTTGCTGACGTG
GTACAGCAACAGAAGATGACAAGCCATATCTTCACAGTGGTGCGTTTGTG
ACTTGGAGAATACGATAAGTAAGGACCAGAAAGATCTACTTGTGACGCAT
AAAAGGCTGGGGCGACTGTTAGATTTGATTCTGATATCGGTCCCATCACG
ACTTCGACTGATTTCTTCATTAGAAAGCAACATCTCTGACAACTCTTGCG
AATTAGTTTGACCATAGAACGACATTCGATGATGTATACCTTTTTTAACA
AGTATCTGATGGTGGTTTCAACTCCTGTGTGTTGACAAACTGGATGGTTC
CAATGTAGATCAAGAGCAATACTGTAGGCGATTGGCGAATTATTGCTGAG
AACAGGTACACAAAACGTGTCATTTGATAGATCTTTCATTGTTGAAGTGA
ATTTCCCAACGATTGAAACTTCGTCTGATGGAAGAATTCGACCAATGTAG
AATTCCATTTTTTTGCTGGGTAATTCTGTCATATTTTTGAGGCTGGACGA
ACTGGAAGACTTCTCTCGTACCGACTTTGAAGAAGTAACTTTCTGCTTCA
TTGATCTCGTCGTCTGACAAGTTTGGTTGATATGTTGTAGATTGTTTTCT
CCGTATAATTTTGCAAAATCTGATGACGTAGGCGATGATTCGAACAACCT
TCGTGAAGGAGTGACGATTTGGATCGACAATATAATCTGAAAAAGCATGG
TAGTCTTTGACAGCATCGTTGACTTTGGAGGTGTGTGATTCAAATGAACT
GACACTGAGTTTGACTTCGTCAGGATTCATGATTGGAAATTGTGATTGAT
CGAGTTGCATCCAAGGATGACCATTGATCCATTTTGAGTTGGAATCGATG
TCCTTGATGCATGATCCTCTTCGTGTGCCAAGATCAGCAAGATTTTCATT
GGACTGAATGTAGAACCATTGACATGTTGTTGTGAACCGGAGAATTTCAA
TGACTCTATTCCTGACCCATTGCTCTAAGGGTTTTTGGTCATTGGTGATC
CAAAATAAACTTGCCTGGTTATCAGTGAGTTTGATTGAATTCTTATGATG
CTTCTTAAACGATCTTCGAACGACTTCTCCTGTGTAGGTGTTCAGTAATG
CAGCATAAGTTCTGCCCTTGGTAATGACATCCCTTTTGGTACAACACGTG
ATCTGGCCAGAACCAATTGACATGATGAGTTTCCTGATCTTCTCTTGAAA
CGTGCATAAATACAAGAACATACCATGGTTTTGCTGGCGTCACCAAAGTC
TAGTGTCTCTACATCTAAGTTGATTGCATCCTCAGGAATGACGACTCGTT
GATACCTAAGGGTATTGAGTTCTTGCATCATCTCGAAGTGCGTTTCCCAN
TGGTTGATATGTTGTAGATTGTTTTCTCCGTATAATTTTGCAAAATCTGA
TGACGTAGGCGATGATTCGAACAACCTTCGTGAAGGAGTGACGATTTGGA
TCGACAATATAATCTGAAAAAGCATGGTAGTCTTTGACAGCATCGTTGAC
TTTGGAGGTGTGTGATTCAAATGAACTGACACTGAGTTTGACTTCGTCAG
GATTCATGATTGGAAATTGTGATTGATCGAGTTGCATCCAAGGATGACCA
TTGATCCATTTTGAGTTGGAATCGATGTCCTTGATGCATGATCCTCTTCG
TGTGCCAAGATCAGCAAGATTTTCATTGGACTGAATGTAGAACCATTGAC
ATGTTGTTGTGAACCGGAGAATTTCAATGACTCTATTCCTGACCCATTGC
TCTAAGGGTTTTTGGTCATTGGTGATCCAAAATAAACTTGCCTGGTTATC
AGTGAGTTTGATTGAATTCTTATGATGCTTCTTAAACGATCTTCGAACGA
CTTCTCCTGTGTAGGTGTTCAGTAATGCAGCATAAGTTCTGCCCTTGGTA
ATGACATCCCTTTTGGTACAACACGTGATCTGGCCAGAACCAATTGACAT
GATGAGTTTCCTGATCTTCTCTTGAAACGTGCATAAATACAAGAACATAC
CATGGTTTTGCTGGCGTCACCAAAGTCTAGTGTCTCTACATCTAAGTTGA
TTGCATCCTCAGGAATGACGACTCGTTGATACCTAAGGGTATTGAGTTCT
TGCATCATCTCGAAGTGCGTTTCCCACAATGGTCTGAGCTCATCTGGTAT
CTTGTCATCCCAGTCGAGGTTTAAGTGAACAAGTTCTTGCAGATCCATCT
TCATAGCACTGACGATTGGTGTCACCTTTCCTGTTAAATCGAAGATCTCT
GCTACCTTGGATGAACAATGTCTGCGAGTGAGTTTGGAAGGTATGATGTT
GACGGTGTTTAATGGCTTCTTGCCACGACATTTCTTGGCGAAATTGAGTT
GGCCAATGTTGAGTGCTAGTGTATCGTCTTTGGGAAACCATCTCATTCCA
GCAACGTGTATGGTCTCTCCATCGTCTGTGAGCTTCTCCAAGGGTTCTTT
GCCTGAAAACGAAACACCTTTCAATTGGAATCCTCCTTTGTTGATGACGA
TTTCTAGATCATCAGCTAGATTGTGAGCTTCAGTGATTGATTGTGCACCA
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NNNNNAGTCATTAAAGTGAGAAAAAGTATCTAGAGTAATTATAAAACAAA
AGAAAATAAATCTAAAGTGTGAATGACATATAAATTAATTGACAGTTAAA
TTAAACAAACAAATGAAATTTTTAATTGATTTTTAAGTTTTATATTTCTT
TTGTAGGAACACTTTCTGTATTCAAGTGTTCACATGACAAGGGAAGACGA
ACTTAAATCATTCTTTTACCAACTAAATTTTTACAAAACTTTTTACCTCC
TGGAAATTCTTCTCGCGGGTTACCATCTGGAAATGTTCGTTCACCCTCTG
TATTAGTCCGAATCGCAGACCTCTACAAAACCCCAGGTAGTATATCTATA
AGGAGCACGAATCCGTTAGTGGATGCCAGCAGCCTACCTCTGTATGGATA
TAAAATATAATGCATTCTTATTTGGGCTGCAAAGTTAATAATTTTAATAC
TTGAATGCGTGAATGATGTAAACGTTGCTTTAACGAAAAATACGGCAATT
TTCTAAAATCTTGTTTCATTTCTGCTTGCTAGGAATTTTAAGGTACAGAA
TCAATTTTTTGGAGTTTTCTAACATTATTGCTTGATAAAGGCTAAAATGC
TCTCTATAATTCGAAGAAAAGTCTTTGAAGTCCCATGAATATCGAATTAA
AGAGAGGCAACTGTAGTTTTTTTTGTATTTGTATTTAATTACTTCTGATA
GATTCTCCTTGATTATTGGGGAGTCGAATAAACTTAATTGTAACTTGGGT
ATAGACAGGGATTATTACACGTTTTTTTATTAGAACGTCCAAAGTTTTTG
AAGCCTTTGGATGTTTTTAAGTTTTTCATTTTTAAGCCCTAAAAACGTTC
ATAAAATTATTTTCGTCATTTTGTGAGTTTTTTTTGTGCAATTTTTTAAA
AATTGTGTGTTTTTGAGTTCACAAAACCTTAAAATGTTATTAACTTGTTT
TTATTATTTGGCCAACGAAGCCTTATGTTATTGAAATAAGCGCATTTGAG
AGAACTTTTCACATGAAGGGCTTGTGTTGTGTCACCCCAGTTTACAAAAT
TACAAGTCTTTATTTTCATCTCAATTCTTCCTATATTTTTCATACAACTT
CTTCACAGGTTTAGATGCAAGAGATTTTCTCATGGCACCGATGATTGCAA
TCAAATTGAACGTCCCGTTCATACCGGTCCGTAAAAAAGGCAAGCTACCC
GGAGAATGTATTTCAGCGGAATCCGTCAAAGAATACGGCAAGGTGTGAAC
AATTTTTTATTTTTGAGAACCGTTTTTCCTAAACTTTTATCAAAATTTTC
GAGAATCTTGACCCTTTGAGATGGAAAGTTTAGTGCGATTTGTACTCCGT
TGAGGGACTTTTGAAGTATGAAAAAGGGACTCCGCTCAAGAATCAAGGAA
GCTAGAAAGGACCTTTGAAGGTATACTTTTTCGCTCAGAATTTCATGCTC
CATACACGATGATCGCAATTATTTTTGTTAAATTCGACTTTGGAAAAATC
GTCAATTTTTTACTCATCTTGCGGGTTAGGAGCTTTGCCTGACACGCCAG
TTTTTTTGCCATAAAAGCTTTTGCCAGCCCTAATTCCCGGGGTCCCTCTC
TATTCAAAACTATTCAAAATCCTATCTTCTTTCGAACCAATCACATGCGC
TTGCCTCCCACAAAAAATGCTACGGATTTTAAGACTTGCCTCCCTGCTAC
AAGAGTATGTTTCCTAAACTGTCTTCTTATTCAGAATAATAAGCAATCGA
AATCTTATCTGTTATTTATAGAGAGGTCCAATGACGCCAAACTTGCCACC
GCATGAAGCCAACGAACGTCTAATTACATATCAGGTATAAATTCTTCTCT
TTTCCATCAAATATATTTTTATGTTCTATTATTTTAAGGGAGAAGCTTTC
CCAGTTTTGAACTACCAAATTGTAAAATATCAACATACAGTTGACGCTCT
CTAATTCGATCTTTAAGGGGAATTGGATTTTCATTGAATAAGGGAGCTTA
TCGAATAATAGAGTGTTGTTAATGAGAAATTCTTGACGATGGTGACTTAG
GATATTATCGAATAAGTACTAGTTATCGCATGACTTTGAGTGCAATACGA
GAAATATTTTACGAGTTCCGAGATTTTTCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022828XLOC_022828Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038195-exon-sc0001795-1575043694:23250..23366TCONS_00038195-exon-sc0001795-1575043694:23250..23366Clytia hemisphaericaexon
TCONS_00038195-exon-sc0001795-1575043694:14775..14902TCONS_00038195-exon-sc0001795-1575043694:14775..14902Clytia hemisphaericaexon
TCONS_00038195-exon-sc0001795-1575043694:13886..14245TCONS_00038195-exon-sc0001795-1575043694:13886..14245Clytia hemisphaericaexon
TCONS_00038195-exon-sc0001795-1510915933:23250..23366TCONS_00038195-exon-sc0001795-1510915933:23250..23366Clytia hemisphaericaexon
TCONS_00038195-exon-sc0001795-1510915933:14775..14902TCONS_00038195-exon-sc0001795-1510915933:14775..14902Clytia hemisphaericaexon
TCONS_00038195-exon-sc0001795-1510915933:13886..14245TCONS_00038195-exon-sc0001795-1510915933:13886..14245Clytia hemisphaericaexon
TCONS_00038195-exon-sc0001795-1491911889:23250..23366TCONS_00038195-exon-sc0001795-1491911889:23250..23366Clytia hemisphaericaexon
TCONS_00038195-exon-sc0001795-1491911889:14775..14902TCONS_00038195-exon-sc0001795-1491911889:14775..14902Clytia hemisphaericaexon
TCONS_00038195-exon-sc0001795-1491911889:13886..14245TCONS_00038195-exon-sc0001795-1491911889:13886..14245Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001795supercontigsc0001795:13886..23366 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.916117	0	0	0	0	0	0	0	0	0	0	0.236674	0	0.665856	0	0	0.319277	0	0.996839	0.00108581	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038195 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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