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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038190 ID=TCONS_00038190|Name=TCONS_00038190|organism=Clytia hemisphaerica|type=transcript|length=1262bp
TCTCGTTCGAAGCCTTGACAATATCGATGATATTTGGCAACGTCTAAAAG
TAGCTTTTGGGGATTCGAGAACTCTTCTAACGAAAAGACTTCAGACACTC
AATGAATCTGAAATCGCCAAAAGTTGTGATCCTGAAAAACTCGTCATCGC
ACTCAGCAAGTTCTCAAATATCATTCGTGAAGTGATGCAACTTGCTCACA
AACATCAAATTGAAGACAATCTTTACTATGGAGAGTCACTTCCACGAATT
TACCAACAACTCGGCGAGGGTCGTCTCACAAGATTCTTGTCAAGCATCAG
CGATGATGAATTCACTCCAAAACAAACTTGGGGGAAGTTGCTAACTTTTC
TTGAGAAAGAGGAAaagctgaataaacaaaaattcaGCATTCAAACTCAA
CGTACTAACGAGAAGAAGGATCCACCTCAAACAAATCCAATTCCAAAGAA
GAAGACATTCCTTGGCAACCAAAACGATCCAGTCAAATGTCAACTGTGTG
GAGAAGCTCCATCATCATCAGAGCACATGGTATCAAATGGTCCAAATGGT
TCCAAGATCGTCCAATACTATACATGCAAAGATTTCGTCGAGAAGAAACC
TGCAGCTCGTCTAGCAATCATCAATAAAAAGGGATTCTGCACTCAATGTC
TTCTGCCAGGTGCTGACGCATCCAAAGGAAAGCACTCTGATGGTCGATGC
CAGAGGGACTTTACATGTCCACACCCCAGTCACCACCAGTATACCATCAA
GAAACATGTCCTATTATGCGAAGAGCACAATGACaatcaatcaaatcaag
atATTCTCGATCGGTTCAAGTCTAGATTCATGCGAAGTTCACACTTACCA
GATTTCGTGAAGCAAATCAAACTGTCATTCCACTCTTCATTCAAGTCTGA
AANTCTACCCAAACTACCACCTCATGTTGGAGGAGAAGTCCACTTGATGA
TTGGTGTCAAGTATCTGCGCTATCATCCAAAGCTTGTTCACCAATTGGAT
TCTGGATTATCTATCTATAAATCTTCATTCATCAACTCAGACGGAGGAAG
AGGTGTCATCGGAGGTCTGCATAAACTATTTACCGAAATTCACAACAGCT
TCTTTACGTCATCAAAAGCCTTCTTTATTAATAGAGGAAAGTACTTATtc
aacaatcaatcaatacTTGGCTATCAGGAAGAACAACTGCTTCTTGACGA
TCAGAATCACTCAGATGTCCATCTCACACATCAACAGCGACTGTTCGAAC
AAGTCGAGTCTA Run BLAST on NCBI protein sequence of TCONS_00038190-protein >TCONS_00038190-protein ID=TCONS_00038190-protein|Name=TCONS_00038190-protein|organism=Clytia hemisphaerica|type=polypeptide|length=420bp
LVRSLDNIDDIWQRLKVAFGDSRTLLTKRLQTLNESEIAKSCDPEKLVIA
LSKFSNIIREVMQLAHKHQIEDNLYYGESLPRIYQQLGEGRLTRFLSSIS
DDEFTPKQTWGKLLTFLEKEEKLNKQKFSIQTQRTNEKKDPPQTNPIPKK
KTFLGNQNDPVKCQLCGEAPSSSEHMVSNGPNGSKIVQYYTCKDFVEKKP
AARLAIINKKGFCTQCLLPGADASKGKHSDGRCQRDFTCPHPSHHQYTIK
KHVLLCEEHNDNQSNQDILDRFKSRFMRSSHLPDFVKQIKLSFHSSFKSE
XLPKLPPHVGGEVHLMIGVKYLRYHPKLVHQLDSGLSIYKSSFINSDGGR
GVIGGLHKLFTEIHNSFFTSSKAFFINRGKYLFNNQSILGYQEEQLLLDD
QNHSDVHLTHQQRLFEQVES Run BLAST on NCBI transcript from alignment at sc0001794:1..1262 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038190 ID=TCONS_00038190|Name=TCONS_00038190|organism=Clytia hemisphaerica|type=transcript|length=1262bp|location=Sequence derived from alignment at sc0001794:1..1262 (Clytia hemisphaerica)
TAGACTCGACTTGTTCGAACAGTCGCTGTTGATGTGTGAGATGGACATCT
GAGTGATTCTGATCGTCAAGAAGCAGTTGTTCTTCCTGATAGCCAAgtat
tgattgattgttgaATAAGTACTTTCCTCTATTAATAAAGAAGGCTTTTG
ATGACGTAAAGAAGCTGTTGTGAATTTCGGTAAATAGTTTATGCAGACCT
CCGATGACACCTCTTCCTCCGTCTGAGTTGATGAATGAAGATTTATAGAT
AGATAATCCAGAATCCAATTGGTGAACAAGCTTTGGATGATAGCGCAGAT
ACTTGACACCAATCATCAAGTGGACTTCTCCTCCAACATGAGGTGGTAGT
TTGGGTAGANTTTCAGACTTGAATGAAGAGTGGAATGACAGTTTGATTTG
CTTCACGAAATCTGGTAAGTGTGAACTTCGCATGAATCTAGACTTGAACC
GATCGAGAATatcttgatttgattgattGTCATTGTGCTCTTCGCATAAT
AGGACATGTTTCTTGATGGTATACTGGTGGTGACTGGGGTGTGGACATGT
AAAGTCCCTCTGGCATCGACCATCAGAGTGCTTTCCTTTGGATGCGTCAG
CACCTGGCAGAAGACATTGAGTGCAGAATCCCTTTTTATTGATGATTGCT
AGACGAGCTGCAGGTTTCTTCTCGACGAAATCTTTGCATGTATAGTATTG
GACGATCTTGGAACCATTTGGACCATTTGATACCATGTGCTCTGATGATG
ATGGAGCTTCTCCACACAGTTGACATTTGACTGGATCGTTTTGGTTGCCA
AGGAATGTCTTCTTCTTTGGAATTGGATTTGTTTGAGGTGGATCCTTCTT
CTCGTTAGTACGTTGAGTTTGAATGCtgaatttttgtttattcagcttTT
CCTCTTTCTCAAGAAAAGTTAGCAACTTCCCCCAAGTTTGTTTTGGAGTG
AATTCATCATCGCTGATGCTTGACAAGAATCTTGTGAGACGACCCTCGCC
GAGTTGTTGGTAAATTCGTGGAAGTGACTCTCCATAGTAAAGATTGTCTT
CAATTTGATGTTTGTGAGCAAGTTGCATCACTTCACGAATGATATTTGAG
AACTTGCTGAGTGCGATGACGAGTTTTTCAGGATCACAACTTTTGGCGAT
TTCAGATTCATTGAGTGTCTGAAGTCTTTTCGTTAGAAGAGTTCTCGAAT
CCCCAAAAGCTACTTTTAGACGTTGCCAAATATCATCGATATTGTCAAGG
CTTCGAACGAGA Coding sequence (CDS) from alignment at sc0001794:1..1262 >TCONS_00038190 ID=TCONS_00038190|Name=TCONS_00038190|organism=Clytia hemisphaerica|type=CDS|length=1260bp|location=Sequence derived from alignment at sc0001794:1..1262 (Clytia hemisphaerica)
AGACTCGACTTGTTCGAACAGTCGCTGTTGATGTGTGAGATGGACATCTG
AGTGATTCTGATCGTCAAGAAGCAGTTGTTCTTCCTGATAGCCAAgtatt
gattgattgttgaATAAGTACTTTCCTCTATTAATAAAGAAGGCTTTTGA
TGACGTAAAGAAGCTGTTGTGAATTTCGGTAAATAGTTTATGCAGACCTC
CGATGACACCTCTTCCTCCGTCTGAGTTGATGAATGAAGATTTATAGATA
GATAATCCAGAATCCAATTGGTGAACAAGCTTTGGATGATAGCGCAGATA
CTTGACACCAATCATCAAGTGGACTTCTCCTCCAACATGAGGTGGTAGTT
TGGGTAGANTTTCAGACTTGAATGAAGAGTGGAATGACAGTTTGATTTGC
TTCACGAAATCTGGTAAGTGTGAACTTCGCATGAATCTAGACTTGAACCG
ATCGAGAATatcttgatttgattgattGTCATTGTGCTCTTCGCATAATA
GGACATGTTTCTTGATGGTATACTGGTGGTGACTGGGGTGTGGACATGTA
AAGTCCCTCTGGCATCGACCATCAGAGTGCTTTCCTTTGGATGCGTCAGC
ACCTGGCAGAAGACATTGAGTGCAGAATCCCTTTTTATTGATGATTGCTA
GACGAGCTGCAGGTTTCTTCTCGACGAAATCTTTGCATGTATAGTATTGG
ACGATCTTGGAACCATTTGGACCATTTGATACCATGTGCTCTGATGATGA
TGGAGCTTCTCCACACAGTTGACATTTGACTGGATCGTTTTGGTTGCCAA
GGAATGTCTTCTTCTTTGGAATTGGATTTGTTTGAGGTGGATCCTTCTTC
TCGTTAGTACGTTGAGTTTGAATGCtgaatttttgtttattcagcttTTC
CTCTTTCTCAAGAAAAGTTAGCAACTTCCCCCAAGTTTGTTTTGGAGTGA
ATTCATCATCGCTGATGCTTGACAAGAATCTTGTGAGACGACCCTCGCCG
AGTTGTTGGTAAATTCGTGGAAGTGACTCTCCATAGTAAAGATTGTCTTC
AATTTGATGTTTGTGAGCAAGTTGCATCACTTCACGAATGATATTTGAGA
ACTTGCTGAGTGCGATGACGAGTTTTTCAGGATCACAACTTTTGGCGATT
TCAGATTCATTGAGTGTCTGAAGTCTTTTCGTTAGAAGAGTTCTCGAATC
CCCAAAAGCTACTTTTAGACGTTGCCAAATATCATCGATATTGTCAAGGC
TTCGAACGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038190-exon-sc0001794-1491911889:1..1262 | TCONS_00038190-exon-sc0001794-1491911889:1..1262 | Clytia hemisphaerica | exon |
| TCONS_00038190-exon-sc0001794-1510915933:1..1262 | TCONS_00038190-exon-sc0001794-1510915933:1..1262 | Clytia hemisphaerica | exon |
| TCONS_00038190-exon-sc0001794-1575043694:1..1262 | TCONS_00038190-exon-sc0001794-1575043694:1..1262 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001794 | supercontig | sc0001794:1..1262 . |
Blast
The following BLAST results are available for this feature:
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