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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038189 ID=TCONS_00038189|Name=TCONS_00038189|organism=Clytia hemisphaerica|type=transcript|length=998bp
TCTGCcatgataaaaacattttactCTTATCCATGTCAGTGAAATTACCT
TTCCTTTCAAGAATGGATGTTTTCCAATCATTAAGATAAACAAGAAATTC
ATCTTTCATCCAGCCAAAACGTTCATCGGTCTCACTTTTATATGGAGCTA
AATCTGGTTTAATCCTTTTCTTGTGCTCCTCCAGACTCCTTGTGTTAATA
CAATCAAAAAACCGGTCCATCCTTTTGCAAAACTTTGCCGTTGCTGCACA
TTCTCCTCCACCATATCTATCAAGAGCTAACCCCATTGTTGAACTAAGAA
TCTGTGCAGCAAGGTAAACACGCATGGTTGAATGAGGTGTTAGATTGATA
TGTTCCCTTTATCTAAGTTGTAAACTTTGCAGAAATGATCCCATATGATA
TATAATCCATCATTCCACATGATGCGTGTGTGTTTCTCTGAAAAACCTGA
ATGATTTACACAATTTCTGGCAGTTTTTATCAAATGTGGGCCATCAGCGA
TAAGGTAAATGTAATTTGTGCATACAAATTAATGGTACGGTAGCACACAT
TGGTAGACGCAGGGTCTTTTCCTCTCAAGTTGGTGTGTAAGCGACAAAAG
CTTCGATTAGAAGAAGCTCCATCCGCAGTGAACGTTATAACCCATAAATT
GCATGTATTCTCAAGAATAAAGACTGCATCCCAAAACAAGGCCATGATTT
GTGTTGAGGTCACATTACTCGTGCCAAAAAAACCAACTACAAATTTAAAG
TCAGTGCATAAACCCCTAAGGAGGAATGCAAGGGCATGAGTAGCAAGAGA
GTCTTCCTCAAGTTGGCCATAATTCAAAAAAGGGTCACCAAGGTCAGTAA
ACCCAATGATCTCGCCAGTACTTTTGTTGAATACGAGATCAGCACGAATT
TTCATTTCATCGCATAAAAGAACCACATAACGTTCAACATCAAATAGTGG
CTCACATTGTCTATTTAGTTCTTGGATAACCTTTGGATTGTATCCGGC Run BLAST on NCBI protein sequence of TCONS_00038189-protein >TCONS_00038189-protein ID=TCONS_00038189-protein|Name=TCONS_00038189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=172bp
AGYNPKVIQELNRQCEPLFDVERYVVLLCDEMKIRADLVFNKSTGEIIGF
TDLGDPFLNYGQLEEDSLATHALAFLLRGLCTDFKFVVGFFGTSNVTSTQ
IMALFWDAVFILENTCNLWVITFTADGASSNRSFCRLHTNLRGKDPASTN
VCYRTINLYAQITFTLSLMAHI Run BLAST on NCBI transcript from alignment at sc0001793:23418..24415 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038189 ID=TCONS_00038189|Name=TCONS_00038189|organism=Clytia hemisphaerica|type=transcript|length=998bp|location=Sequence derived from alignment at sc0001793:23418..24415 (Clytia hemisphaerica)
GCCGGATACAATCCAAAGGTTATCCAAGAACTAAATAGACAATGTGAGCC
ACTATTTGATGTTGAACGTTATGTGGTTCTTTTATGCGATGAAATGAAAA
TTCGTGCTGATCTCGTATTCAACAAAAGTACTGGCGAGATCATTGGGTTT
ACTGACCTTGGTGACCCTTTTTTGAATTATGGCCAACTTGAGGAAGACTC
TCTTGCTACTCATGCCCTTGCATTCCTCCTTAGGGGTTTATGCACTGACT
TTAAATTTGTAGTTGGTTTTTTTGGCACGAGTAATGTGACCTCAACACAA
ATCATGGCCTTGTTTTGGGATGCAGTCTTTATTCTTGAGAATACATGCAA
TTTATGGGTTATAACGTTCACTGCGGATGGAGCTTCTTCTAATCGAAGCT
TTTGTCGCTTACACACCAACTTGAGAGGAAAAGACCCTGCGTCTACCAAT
GTGTGCTACCGTACCATTAATTTGTATGCACAAATTACATTTACCTTATC
GCTGATGGCCCACATTTGATAAAAACTGCCAGAAATTGTGTAAATCATTC
AGGTTTTTCAGAGAAACACACACGCATCATGTGGAATGATGGATTATATA
TCATATGGGATCATTTCTGCAAAGTTTACAACTTAGATAAAGGGAACATA
TCAATCTAACACCTCATTCAACCATGCGTGTTTACCTTGCTGCACAGATT
CTTAGTTCAACAATGGGGTTAGCTCTTGATAGATATGGTGGAGGAGAATG
TGCAGCAACGGCAAAGTTTTGCAAAAGGATGGACCGGTTTTTTGATTGTA
TTAACACAAGGAGTCTGGAGGAGCACAAGAAAAGGATTAAACCAGATTTA
GCTCCATATAAAAGTGAGACCGATGAACGTTTTGGCTGGATGAAAGATGA
ATTTCTTGTTTATCTTAATGATTGGAAAACATCCATTCTTGAAAGGAAAG
GTAATTTCACTGACATGGATAAGagtaaaatgtttttatcatgGCAGA Coding sequence (CDS) from alignment at sc0001793:23418..24415 >TCONS_00038189 ID=TCONS_00038189|Name=TCONS_00038189|organism=Clytia hemisphaerica|type=CDS|length=519bp|location=Sequence derived from alignment at sc0001793:23418..24415 (Clytia hemisphaerica)
GCCGGATACAATCCAAAGGTTATCCAAGAACTAAATAGACAATGTGAGCC
ACTATTTGATGTTGAACGTTATGTGGTTCTTTTATGCGATGAAATGAAAA
TTCGTGCTGATCTCGTATTCAACAAAAGTACTGGCGAGATCATTGGGTTT
ACTGACCTTGGTGACCCTTTTTTGAATTATGGCCAACTTGAGGAAGACTC
TCTTGCTACTCATGCCCTTGCATTCCTCCTTAGGGGTTTATGCACTGACT
TTAAATTTGTAGTTGGTTTTTTTGGCACGAGTAATGTGACCTCAACACAA
ATCATGGCCTTGTTTTGGGATGCAGTCTTTATTCTTGAGAATACATGCAA
TTTATGGGTTATAACGTTCACTGCGGATGGAGCTTCTTCTAATCGAAGCT
TTTGTCGCTTACACACCAACTTGAGAGGAAAAGACCCTGCGTCTACCAAT
GTGTGCTACCGTACCATTAATTTGTATGCACAAATTACATTTACCTTATC
GCTGATGGCCCACATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038189-exon-sc0001793-1491911889:23418..24415 | TCONS_00038189-exon-sc0001793-1491911889:23418..24415 | Clytia hemisphaerica | exon |
| TCONS_00038189-exon-sc0001793-1510915933:23418..24415 | TCONS_00038189-exon-sc0001793-1510915933:23418..24415 | Clytia hemisphaerica | exon |
| TCONS_00038189-exon-sc0001793-1575043694:23418..24415 | TCONS_00038189-exon-sc0001793-1575043694:23418..24415 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001793 | supercontig | sc0001793:23418..24415 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021896 | Transposase_37 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004803 | transposase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006313 | transposition, DNA-mediated |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0004803 |
transposase activity |
Blast
The following BLAST results are available for this feature:
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