TCONS_00038182 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038182
Unique NameTCONS_00038182
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length258

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038182 ID=TCONS_00038182|Name=TCONS_00038182|organism=Clytia hemisphaerica|type=transcript|length=258bp
GTTGTTCATCAAAGTAGTGCTCAAAGTATTCTGATATTTGATTGTGATAT
ActctttcgtaaattttggaTATTACCGGCGGTATACTTATTGGTCTATA
GTTACTTTTatcgtttttagattttttcttgtAGACTGGGGTGACTGTCG
CAAAAAAAGCCTGAGCTGAAGGAGTCATTTATGCTTATAGAGAAGCAGCT
TGCAAATAAAGAAAGAAAACCAATCAAAGAAGGCCAAGGCAAATACATCA
AATTTGCT
Run BLAST on NCBI

transcript from alignment at sc0001791:45474..46008+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038182 ID=TCONS_00038182|Name=TCONS_00038182|organism=Clytia hemisphaerica|type=transcript|length=535bp|location=Sequence derived from alignment at sc0001791:45474..46008+ (Clytia hemisphaerica)
GTTGTTCATCAAAGTAGTGCTCAAAGTATTCTGATATTTGATTGTGATAT
ActctttcgtaaattttggaTATTACCGGCGGTATACTTATTGGTCTATA
GTTACTTTTatcgtttttagattttttcttgtAGACTGGGGTGACTGTCG
CAAAAAAAGCCTGAGCTGAAGGAGTCATTTATGCTTATAGAGAAGCAGCT
TGCAAATAAGTGAGagtatttttaaattatttttgctgGTATATCATTTT
CCGCTTGAGACTTATTTGTCTTAAGGTTATTAATCATCTTCTCTACTTCG
TCTTCGGTGGTGTTTCTGAACTTGAAGgagttttcattgtttgatacctt
ttcttttatcttgagtatttttcagcaaacgccaaaataaattcccgcca
aatttagttttttcggtcatccgccaaattaaattcccgccaaaagttct
tcctttaaggtagttgaATGACCCTAATTTCTTTAGAGAAAGAAAACCAA
TCAAAGAAGGCCAAGGCAAATACATCAAATTTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022815XLOC_022815Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038182-exon-sc0001791-1491911889:45474..45682TCONS_00038182-exon-sc0001791-1491911889:45474..45682Clytia hemisphaericaexon
TCONS_00038182-exon-sc0001791-1510915933:45474..45682TCONS_00038182-exon-sc0001791-1510915933:45474..45682Clytia hemisphaericaexon
TCONS_00038182-exon-sc0001791-1575043694:45474..45682TCONS_00038182-exon-sc0001791-1575043694:45474..45682Clytia hemisphaericaexon
TCONS_00038182-exon-sc0001791-1491911889:45960..46008TCONS_00038182-exon-sc0001791-1491911889:45960..46008Clytia hemisphaericaexon
TCONS_00038182-exon-sc0001791-1510915933:45960..46008TCONS_00038182-exon-sc0001791-1510915933:45960..46008Clytia hemisphaericaexon
TCONS_00038182-exon-sc0001791-1575043694:45960..46008TCONS_00038182-exon-sc0001791-1575043694:45960..46008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001791supercontigsc0001791:45474..46008 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.87335	0	0	0	0	0	0	0.0283719	0	0	0	0	0	1.92152	0.401404	2.72241	1.0415	0.719444	3.01138	1.14418	0	1.32854	0	0	0	0	1.90162	0.170336	0.14765
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038182 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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