TCONS_00038180 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038180
Unique NameTCONS_00038180
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length732

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038180 ID=TCONS_00038180|Name=TCONS_00038180|organism=Clytia hemisphaerica|type=transcript|length=732bp
CTCAGTACACCTTCAACTACCCTAACAACgtcGTCTGGAACATGTTCAAT
GTTGAACAACACTGCTTCTTTTACACAAGTATCAAATGTAACAATTCCCG
AACGTTCCTCCAACACTATGTCTCCTATTCCATTGTATGATCAGAGTCAA
AGGGACAAGGTGCAAGAGCaaatgaaGCACCTATTTCCACAAATATCCAA
TGATCGTAAAAGGAAAAGAAACAACTTAGCTGTTGGTCTGAATTCAAATC
CATTCGTTAAAGACAGCTTCACCAGGGAGTACACATGCCTCCCACTGGTC
ACTAGTGTCACAACTCCCTCAAGCCAAATGGCAATGACACTAGAGTACGC
AGGTTTAggaaagaagaagatcacattGCCAAGCAACGCTAATCATGCTG
AAGTGGTAGCAAACATCCATTCAGCATACCCAAGATTAAAAGAATGTGGT
TTTTTCACTATGCACAAAGCCAAGAGAGGAGGAAATTGTCAACCCCTGCA
AGACATGAATTTGGACTCGTATGACGTGAACTCGTTACGTAAAAAGTTTA
AATCTAAATCGTTGATTTATTTACGTCCATTACAGAAAAATCTAGATTTG
TCATTGGTTACAAAAGAAGAGGTTTGTATCTAAATGGAATTGGTTAGCTT
TAAAATAATCTGTACATTATTATATGTTATGTGTCATTtNGTGTACATTA
TTTACTCACTTgtaaaaatcctatttttttcG
Run BLAST on NCBI

transcript from alignment at sc0001790:19262..22078-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038180 ID=TCONS_00038180|Name=TCONS_00038180|organism=Clytia hemisphaerica|type=transcript|length=2817bp|location=Sequence derived from alignment at sc0001790:19262..22078- (Clytia hemisphaerica)
CTCAGTACACCTTCAACTACCCTAACAACGTGAGTTGATTTTGTACACAG
TCATGTGATATGTTTAGGAATTTTTAAACTTGATTTTGTTTCTCTTGGAT
CAGAGAATTAGACAATTTCATCTATTTTTACTGCTACCTTAAGGAAATAA
ATTAGTGTGTGAGAGTAAATTAATGCAGAATAAATTAATGTGAATCGACC
CTTATTCACATCATTTAATTCAGCATTTCCTAAAATTGTTTCATATGCAT
TAATAAATTCTGCATTATTTTGCTATCATTTTGTATGAAAGAAATGTTTC
ATTTTCACTAATTTATTCCACAAAACATAAATTTATCCGGCCTTATTTGC
ATTAATGAATTCTGCATTTTAATTTATTCCTGCATTAATCTATTCCCTTT
ATGCACTTTGATCGTATTTTTAAAGAGTATCCATTATCTGGGTGAAATTT
CTCTGATAAAAAACAAGTAAATTAATAGCACTTTGTTTGTATCAATTGTA
ATTTAATTATCCACTGAATGGAATTTTTCATTTTAGGTCGTCTGGAACAT
GTTCAATGTTGAACAACACTGCTTCTTTTACACAGTGAGTCTAGAATGAA
GAGCTTTTGTCAATGGTGCTTTCCTCAGACTCAATTATTTCAAATTTCAA
AAAAAGTCCTGGAACCCCTAAGAAAAAGTATGCCTGTGTGGAAACTCAAA
ATTTGCAAAGCAACCCAATCTGATAGTGATTCTAAGAATGCCTGCTTAGG
TTTAATTAAAGCTTCCGCAAGTGGAACCATCAAAAAGATAACTATTAGAG
TAAATAGCTGTCTTAGTATCTTAAACTAGATTTGAATAAAATTCTTTAAG
AATCACAGGTCATTTTTGATAATTATACATGTATAAATTATCCTCTTCTA
GAGTATCAAATGTAACAATTCCCGAACGTTCCTCCAACACTATGTCTCCT
ATTCCATTGTAAGTGTTATTATCTCATCTCCATTCCTCTATCGATGTATC
TTGAGAAAACACGTCTCACTCTATTAGCGAATGCCATCTAATTTAATTTA
TCCTCATATCTTTCTTTAGCATTTCAGGCTGACCTTCCAGCGCAGCTCAG
AAGTTAGAACTAACTTTATTAAGTGTACAAAGGGTGGTGGTGTTACTAAA
TTCTTGCGGAAAAGTAGTTAGTAGGCCTGGCACCACCCAAAAACAGCAGT
TACTACACTGTGTAGTAGCTGTTTTTAAAGCTTTTTTGTAATTTCTACTG
TTTATTTAGGTATGATCAGAGTCAAAGGGACAAGGTGCAAGAGCAAATGA
AGTAAGCCCTGATACTTTGGGGACATTCAAAAACTATGTTTGCCAATAGC
TGAACCCTTTTGGCCAGTTTGGCAACAAACATACTTTTTGAATTAACCTA
ACAATGTTTTATGTGTTTTATAAGCACATGATCATTTTCCCCCTTGCTCT
TACTCAGACACACTCTGACTTACTTTGATCTTTGAGAACGAAATTTTTTA
GGAAAAGAATTCTTTTTTCTTCAGAATTTTTTGTTCCATGTTCTTATGAT
AGCCAGGTAGGTCCATAAAAGATTGCTTGTTAAAAGGTAAATAATTTGAT
TCTAATTCTAGGCACCTATTTCCACAAATATCCAATGATCGTAAAAGGAA
AAGAAACAACTTAGCTGTTGGTCTGAATTCAAATCCATTCGTTAAAGACA
GCTTCACCAGGGAGTACACATGCCTCCCACTGGTCACTAGTGTCACAACT
CCCTCAAGCCAAATGGCAATGACACTAGAGTACGCAGGTTTAGGAAAGAA
GAAGATCACATTGCCAAGCAACGCTAATCATGCTGAAGTGGTAGCAAACA
TCCATTCAGCATACCCAAGATTAAAAGAATGTGGTTTTTTCACTATGCAC
AAAGCCAAGAGAGGAGGAAATTGTCAACCCCTGCAAGACATGAATTTGGA
CTCGTATGACGTGAACTCGTTACGTAAAAAGTTTAAATCTAAATCGTTGA
TTTATTTACGTCCATTACAGAAAAATCTAGATTTGTCATTGGTTACAAAA
GAAGAGGTTTGTATCTAAATGGAATTGGTTAGCTTTAAAATAATCTGTAC
ATTATTATATGTTATGTGTCATTATGTTGTACATTATTTACTCACTTTTA
AAAATCCTGTTTTTTTCGATTCTCCTCTCTTTTTTATCCCCCACCATATT
TAAAAAATTTCGATTCCCACCTCTTTTTTGCTTTCCCCTAATTATTTGAC
GATATTGCAGTTCCCCATATGGTTACATAAAAATGCCTCAGTTAAAGTTT
CTAAAAGTTTGGGAAAGCTTAGAAAAATATTCTTGAAACTGCTTGAAAAT
GGAGTTTTATTGATTTAGTTCTAGTATAGTTTGCTGATTTTATTGTTTAA
ACAAGTCTTCTGCGAGACTACATTGAGAACAAAGTTCCAAATTTTAATGT
TCCCTCTTTATTTTCTTCCATCAAATTTCAAATTTTTCGATAAGCAAACT
TTTTTTGTTATCAAAAGTAATAAGAAAGGAGGGTTACTACAAGACAGATT
CAGTTACTACTATCTGTAGTAACTGCTTTACAGTAAAAAATTTGCACATA
CCACCCTCTGAGACTGTTTTACCAAAAATTGGTTCAACTTACTATGTTTC
ATTGAATCTTGTTAAAAAATACTAGACAGGCAGCTGACGACATCTAAAAT
CTGGACGACTTTGGGACAAACGTCGAGTTGATTTTTCTTGTTCCCATATA
TCTACTGATCCTAAAAATTTTACTNGTGTACATTATTTACTCACTTGTAA
AAATCCTATTTTTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022813XLOC_022813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038180-exon-sc0001790-1575043694:22050..22078TCONS_00038180-exon-sc0001790-1575043694:22050..22078Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1575043694:21495..21542TCONS_00038180-exon-sc0001790-1575043694:21495..21542Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1575043694:21121..21177TCONS_00038180-exon-sc0001790-1575043694:21121..21177Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1575043694:20778..20819TCONS_00038180-exon-sc0001790-1575043694:20778..20819Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1575043694:19956..20467TCONS_00038180-exon-sc0001790-1575043694:19956..20467Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1575043694:19262..19305TCONS_00038180-exon-sc0001790-1575043694:19262..19305Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1510915933:22050..22078TCONS_00038180-exon-sc0001790-1510915933:22050..22078Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1510915933:21495..21542TCONS_00038180-exon-sc0001790-1510915933:21495..21542Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1510915933:21121..21177TCONS_00038180-exon-sc0001790-1510915933:21121..21177Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1510915933:20778..20819TCONS_00038180-exon-sc0001790-1510915933:20778..20819Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1510915933:19956..20467TCONS_00038180-exon-sc0001790-1510915933:19956..20467Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1510915933:19262..19305TCONS_00038180-exon-sc0001790-1510915933:19262..19305Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1491911889:22050..22078TCONS_00038180-exon-sc0001790-1491911889:22050..22078Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1491911889:21495..21542TCONS_00038180-exon-sc0001790-1491911889:21495..21542Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1491911889:21121..21177TCONS_00038180-exon-sc0001790-1491911889:21121..21177Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1491911889:20778..20819TCONS_00038180-exon-sc0001790-1491911889:20778..20819Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1491911889:19956..20467TCONS_00038180-exon-sc0001790-1491911889:19956..20467Clytia hemisphaericaexon
TCONS_00038180-exon-sc0001790-1491911889:19262..19305TCONS_00038180-exon-sc0001790-1491911889:19262..19305Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001790supercontigsc0001790:19262..22078 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0768063	0	2.00921	3.46035	3.04926	7.39869	2.01558	1.94951	2.58926	0.655061	1.96493	3.28374	0.038519	0	0	0.052195	0	0	0	0	0	0	1.47013	3.45419	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038180 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top