TCONS_00038173 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038173
Unique NameTCONS_00038173
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1833

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038173 ID=TCONS_00038173|Name=TCONS_00038173|organism=Clytia hemisphaerica|type=transcript|length=1833bp
aaataaaataaaataagagcTAGAAACTTGAAGAAAAAGTTTATGGTCAT
CAATATACCAATACATTTGACATGCCAGGACGTCACAGATACTATTTACA
ACCGAGTGGACTGAACGTTATCATTGAACACATTGAGAAGATTTTCCATC
AAATAAAGTCAATAATTAAAATGCCCGACGCAAGTATGGATGACTTAGAG
GGTGTGTTTAGCACTTTATGCAGAACGGAAAGAATTTTGACTGACTTGGA
AACTCTATATAATGTGCGGGAGTTTTCTATAATCAATCGATGTATTTATA
AGCTAAAGGATGAgcttaaaatagaaaaaatggtAATTCAACCCGTGAAA
GTTGTTCAAAAAGTACCACAAGAAATCGGACCTCCAAAATACTTTATCCC
TGTTGAAGTGCTTGAATATTATGTTGAAAACGGATTTAAAAATGTTGATA
TTGCGAAGATGCTACATGTAAGCCTCAGTACTATTAAAAGACGGCttagt
gaaaacactctaaacAAAAAAGATAAGTTCAGCAAGATGACAGACGATGA
ACTTGATGTAGTGGTAAATGAAATTCTTGTGGATCATCCTAATACTGGTT
ACAAGAAGATGAGGGGTTTTCTGTTGGCACGAGGATTGATTCTCCAAGAA
CGTAGGGTACGAGAAGCAATGAGGAGAGTGGATCCTGAGGGAGTAATAGT
TCGGTCATTACAGTCAAGAGTAGTTTTAAGAAGAAAATATCGCGTCGCTG
GTCCTCTGTCATTGTGGCACATGGATGGAAATCATAAACTAATTAGTTAC
AGGATGGTTATACACGGGTGTATTGATGGCTACTCTAGGCGTATTATTTA
CCTATCATGTGCTAACAATAATCAAGCTGCTACTGtattggaaattttca
aaaaaactatcTGTATACACGGTCTTCCTTCAAGAGTTCGAGGTGATCAC
GGTGGTGAAAACGTTGACGTTGCTCGTTTTATGTTAATGCATCCTTTACG
TGGCCTTGGGAGAGGCAGCTTTATTGCTTCCAAGAGTGTGCATAATCAGC
GCATTGAACGCTTGTGGGTTGACGTTTATCACGGAGCTACTAAATTATTT
CAGACAATTTTTCTCAGTTTAGAGAATACTGGAAATTTGAACTTGTCGTC
TGAAATAGATTTGTTTGCATTGCATTTTGTCTACAttacaaaaatcaata
aatctttAAAAGCATTTGTCAATGGTTGGAACCACCACCCACTAAGTACG
GAAAACAACAAAACACCCAATCAACTGTGGATTTCTGGACTGCATAAAAT
CGCTGGTACAGGCTCAAAGATAGATGAAGAAATATGGGAACCAAAAACTG
ACGAAGAAGCAATGTATTATGGGATTGATCGATCATCAAATGTTGATAAT
ACTCGGCAAGAAGATGAATATAAGCATGTTTTTGTTCCATCAATTGAACC
GAATGTTCCAGAGGACCTGATGATTGTAATCAATAACAGTTTTGGCCCTT
TAGTTGACAGCGATGCAGACGAAGATCATGGCGTATCAACGTATCTTCGG
TTGCGTAATTTCTTGTATTCTTGTATATCTGCGCTAAATTTAAGTAGGgt
ctttgtaaatttttgtagaAATAAAGCTAACGATAAgaaattactttagg
cgtataTATTTTCACGAACAGAAGCTTTTTTGAGCAGGTCCAAAAATCGC
AAAATCTATTACGTCATTTAGTTTTCAAGTTCCAGAAACAATGTTTTTCT
CGCAAATTAATCCAGTCAACATTTGTGTGCCAAATTCGAGTTTGAGAAAG
CCGATTTTCGCAATTTTGACCTTTtactgccag
Run BLAST on NCBI

protein sequence of TCONS_00038173-protein

>TCONS_00038173-protein ID=TCONS_00038173-protein|Name=TCONS_00038173-protein|organism=Clytia hemisphaerica|type=polypeptide|length=525bp
MPGRHRYYLQPSGLNVIIEHIEKIFHQIKSIIKMPDASMDDLEGVFSTLC
RTERILTDLETLYNVREFSIINRCIYKLKDELKIEKMVIQPVKVVQKVPQ
EIGPPKYFIPVEVLEYYVENGFKNVDIAKMLHVSLSTIKRRLSENTLNKK
DKFSKMTDDELDVVVNEILVDHPNTGYKKMRGFLLARGLILQERRVREAM
RRVDPEGVIVRSLQSRVVLRRKYRVAGPLSLWHMDGNHKLISYRMVIHGC
IDGYSRRIIYLSCANNNQAATVLEIFKKTICIHGLPSRVRGDHGGENVDV
ARFMLMHPLRGLGRGSFIASKSVHNQRIERLWVDVYHGATKLFQTIFLSL
ENTGNLNLSSEIDLFALHFVYITKINKSLKAFVNGWNHHPLSTENNKTPN
QLWISGLHKIAGTGSKIDEEIWEPKTDEEAMYYGIDRSSNVDNTRQEDEY
KHVFVPSIEPNVPEDLMIVINNSFGPLVDSDADEDHGVSTYLRLRNFLYS
CISALNLSRVFVNFCRNKANDKKLL
Run BLAST on NCBI

transcript from alignment at sc0001790:8169..12083-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038173 ID=TCONS_00038173|Name=TCONS_00038173|organism=Clytia hemisphaerica|type=transcript|length=3915bp|location=Sequence derived from alignment at sc0001790:8169..12083- (Clytia hemisphaerica)
AAATAAAATAAAATAAGAGCTAGAAACTTGAAGAAAAAGTTTATGGTCAT
CAATATACCAATACATTTGACATGCCAGGACGTCACAGATACTATGTAAT
TATTCAACTTTTTTTCGGTAGCGTGTCTTAATCATATGTGACTGGATTAT
GATTACATTGTCTTTTTCACCAGTCTCCTAAAATATCTTCAAATATTATA
CTAAGGTCAATGATAGTCCTGGGATCAAGGTTGGTATAAACTTAATATCA
ACCAATGAGAAGCCTGAACTGGTTAACTCATTAAGTGTCAATGGCATGGC
TTCATATGATATCGGCCGATTCCTAAACATAATGTCATCCTGTTTCTAAA
CCCGAAAAAAAACCATATCGAGAAGCGACAAATTTTTCTTACTTGGGGCG
TGATCGTGCATTTGAAGAAATCAAAAAATAAAATTTGAAATTACGGATTG
ATGGCATTTAATGGATTAACCAAAATCAATTAACAATAAATCAGTGTATT
CATTTATCATCTTATTATCTTCAATTTTAGTTACAACCGAGTGGACTGAA
CGTTATCATTGAACACATTGAGAAGATTTTCCATCAAATAAAGTCAATAA
TTAAAATGCCCGACGCAAGTATGGATGACTTAGAGGGTGTGTTTAGCACT
TTATGCAGAACGGAAAGAATTTTGACTGACTTGGAAACTCTATATAATGT
GCGGGAGTTTTCTATAATCAATCGATGTATTTATAAGCTAAAGGATGAGC
TTAAAATAGAAAAAATGGTAATTCAACCCGTGAAAGTTGTTCAAAAAGTA
CCACAAGAAATCGGACCTCCAAAATACTTTATCCCTGTTGAAGTGCTTGA
ATATTATGTTGAAAACGGATTTAAAAATGTTGATATTGCGAAGATGCTAC
ATGTAAGCCTCAGTACTATTAAAAGACGGCTTAGTGAAAACACTCTAAAC
AAAAAAGATAAGTTCAGCAAGATGACAGACGATGAACTTGATGTAGTGGT
AAATGAAATTCTTGTGGATCATCCTAATACTGGTTACAAGAAGATGAGGG
GTTTTCTGTTGGCACGAGGATTGATTCTCCAAGAACGTAGGGTACGAGAA
GCAATGAGGAGAGTGGATCCTGAGGGAGTAATAGTTCGGTCATTACAGTC
AAGAGTAGTTTTAAGAAGAAAATATCGCGTCGCTGGTCCTCTGTCATTGT
GGCACATGGATGGAAATCATAAACTAATTAGGTAAGAATATCCAATATAC
TGTAATATAAAGTATTTGCTGAAAGTGCACTCCTTGATTTAAATTTTCTG
GACGTTTTTCTTTATTTTCATAAATTTGATTTTTAGTGTCTAGGGACACT
TTTCAACCTTGGTACAATAAGGCTTCGAAATAATATGGAAAAAGTGGAGC
ATCACTGTGGTACACACCTTAGGGAATGTTTTACCGATAATGAATTGATA
CTGATATCATGATATTGTTTTAGTTACAGGATGGTTATACACGGGTGTAT
TGATGGCTACTCTAGGCGTATTATTTACCTATCATGTGCTAACAATAATC
AAGCTGCTACTGTATTGGAAATTTTCAAAAAAACTATCTGTATACACGGT
CTTCCTTCAAGAGTTCGAGGTGATCACGGTGGTGAAAACGTTGACGTTGC
TCGTTTTATGTTAATGCATCCTTTACGTGGCCTTGGGAGAGGCAGCTTTA
TTGCTTCCAAGAGTGTGCATAATCAGCGCATTGAACGCTTGTGGGTTGAC
GTTTATCACGGAGCTACTAAATTATTTCAGACAATTTTTCTCAGTTTAGA
GAATACTGGAAATTTGAACTTGTCGTCTGAAATAGATTTGTTTGCATTGC
ATTTTGTCTACATTACAAAAATCAATAAATCTTTAAAAGCGTTTGTCAAT
GGTTGGAACCACCACCCACTAAGTACGGAAAACAACAAAACACCCAATCA
ACTGTGGATTTCTGGACTGCATAAAATTGCTGGTACAGGCTCAAAGATAG
ATGAAGAAATATGGGAACCAAAAACTGACGTAGGTCTAAATTTGATATCA
AAATCATAGTATACCTTTTCNTTGATCACTTTTCAACCTTGGTACAATAA
GGCTTCGAAATAATATGGAAAAGAGCATCACTGTTACACACGTTAGGGAA
TGTTTTACCGATAATGAATTGATACTGATATCATGTAGTGTTTTTAGTTA
CAGGATGGTTATACACGGGTGTATTGATGGCTACTCTAGGCGTATTATTT
ACCTATCATGTGCTAACAATAATCAAGCTGCTACTGTATTGGAAATTTTC
AAAAAAACTATCTGTATACACGGTCTTCCTTCAAGAGTTCGAGGTGATCA
CGGTGGTGAAAACGTTGACGTTGCTCGTTTTATGTTAATGCATCCTTTAC
GTGGCCTTGGGAGAGGCAGCTTTATTGCTTCCAAGAGTGTGCATAATCAG
CGCATTGAACGCTTGTGGGTTGACGTTTATCACGGAGCTACTAAATTATT
TCAGACAATTTTTCTCAGTTTAGAGAATACTGGAAATTTGAACTTGTCGT
CTGAAATAGATTTGTTTGCATTGCATTTTGTCTACATTACAAAAATCAAT
AAATCTTTAAAAGCATTTGTCAATGGTTGGAACCACCACCCACTAAGTAC
GGAAAACAACAAAACACCCAATCAACTGTGGATTTCTGGACTGCATAAAA
TCGCTGGTACAGGCTCAAAGATAGATGAAGAAATATGGGAACCAAAAACT
GACGTAGGTCTAAATTTGATATCAAAATCATAGTATACCTTTTCAATCTT
AAAATTTTAAGATGCTCCCCTTTTACGAATTTAGAAAGATGCACGATAAC
TTTTAACTCTGTTTAACTAACAATATGTAAGGACCTACTCTTTCAAAAAC
TAATATACTTTGGATTCGTCAATTTTAAGAATTGTCTGCATAGATAGATC
GTCATACTGGGCCAAGGAACCCCAACTAAAACTTTTCCTGGTACTTCAAG
TAGTAAATTAATGAAATCTGGTAGAATTGGTTCATAAATGGCCCTTACGT
AGAATTTTCCCCTTTTTTAACTTGACAGGTTTTGGGTAGGGTTTGTCGGA
TGTCGGCATGCTGATCTTAGTTCGGCGAAAAAAACACCATTAAACGCAAA
AAATTTTGAAATGTTGCAAATAGTTGCAATAACAGATTCCTGAGCTATTT
CATATGGCCTTTTAACTCCTTCAATACAGTGGGAAACCTAAATTTTTTTT
ATTTTTTTTCTAATAATGATGATGTTTCAAAAGCAAAAGCAAAACATGTC
ATATTTGAGTTTGTTAGTTCTTTTCAAGAGCTATCTTTTTAGTGAGCCAA
TTTTAAAGTTTTAAGGACCTAACAAAATTACCAGCTCGGAATAAGATTAA
TACATTTTTTTTTTGTTTTCGATAAAAACTTCAGGAAGAAGCAATGTATT
ATGGGATTGATCGATCATCAAATGTTGATAATACTCGGCAAGAAGATGAA
TATAAGCATGTTTTTGTTCCATCAATTGAACCGAATGTTCCAGAGGACCT
GATGATTGTAATCAATAACAGTTTTGGCCCTTTAGTTGACAGCGATGCAG
ACGAAGATCATGGCGTATCAACGTATCTTCGGTTGCGTAATTTCTTGTAT
TCTTGTATATCTGCGCTAAATTTAAGTAGGGTCTTTGTAAATTTTTGTAG
AAATAAAGCTAACGATAAGAAATTACTTTAGGCGTATATATTTTCACGAA
CAGAAGCTTTTTTGAGCAGGTCCAAAAATCGCAAAATCTATTACGTCATT
TAGTTTTCAAGTTCCAGAAACAATGTTTTTCTCGCAAATTAATCCAGTCA
ACATTTGTGTGCCAAATTCGAGTTTGAGAAAGCCGATTTTCGCAATTTTG
ACCTTTTACTGCCAG

Coding sequence (CDS) from alignment at sc0001790:8169..12083-

>TCONS_00038173 ID=TCONS_00038173|Name=TCONS_00038173|organism=Clytia hemisphaerica|type=CDS|length=6312bp|location=Sequence derived from alignment at sc0001790:8169..12083- (Clytia hemisphaerica)
GAAGAAGCAATGTATTATGGGATTGATCGATCATCAAATGTTGATAATAC
TCGGCAAGAAGATGAATATAAGCATGTTTTTGTTCCATCAATTGAACCGA
ATGTTCCAGAGGACCTGATGATTGTAATCAATAACAGTTTTGGCCCTTTA
GTTGACAGCGATGCAGACGAAGATCATGGCGTATCAACGTATCTTCGGTT
GCGTAATTTCTTGTATTCTTGTATATCTGCGCTAAATTTAAGTAGGGTCT
TTGTAAATTTTTGTAGAAATAAAGCTAACGATAAGAAATTACTTTAGTTA
CAGGATGGTTATACACGGGTGTATTGATGGCTACTCTAGGCGTATTATTT
ACCTATCATGTGCTAACAATAATCAAGCTGCTACTGTATTGGAAATTTTC
AAAAAAACTATCTGTATACACGGTCTTCCTTCAAGAGTTCGAGGTGATCA
CGGTGGTGAAAACGTTGACGTTGCTCGTTTTATGTTAATGCATCCTTTAC
GTGGCCTTGGGAGAGGCAGCTTTATTGCTTCCAAGAGTGTGCATAATCAG
CGCATTGAACGCTTGTGGGTTGACGTTTATCACGGAGCTACTAAATTATT
TCAGACAATTTTTCTCAGTTTAGAGAATACTGGAAATTTGAACTTGTCGT
CTGAAATAGATTTGTTTGCATTGCATTTTGTCTACATTACAAAAATCAAT
AAATCTTTAAAAGCATTTGTCAATGGTTGGAACCACCACCCACTAAGTAC
GGAAAACAACAAAACACCCAATCAACTGTGGATTTCTGGACTGCATAAAA
TCGCTGGTACAGGCTCAAAGATAGATGAAGAAATATGGGAACCAAAAACT
GACTTACAACCGAGTGGACTGAACGTTATCATTGAACACATTGAGAAGAT
TTTCCATCAAATAAAGTCAATAATTAAAATGCCCGACGCAAGTATGGATG
ACTTAGAGGGTGTGTTTAGCACTTTATGCAGAACGGAAAGAATTTTGACT
GACTTGGAAACTCTATATAATGTGCGGGAGTTTTCTATAATCAATCGATG
TATTTATAAGCTAAAGGATGAGCTTAAAATAGAAAAAATGGTAATTCAAC
CCGTGAAAGTTGTTCAAAAAGTACCACAAGAAATCGGACCTCCAAAATAC
TTTATCCCTGTTGAAGTGCTTGAATATTATGTTGAAAACGGATTTAAAAA
TGTTGATATTGCGAAGATGCTACATGTAAGCCTCAGTACTATTAAAAGAC
GGCTTAGTGAAAACACTCTAAACAAAAAAGATAAGTTCAGCAAGATGACA
GACGATGAACTTGATGTAGTGGTAAATGAAATTCTTGTGGATCATCCTAA
TACTGGTTACAAGAAGATGAGGGGTTTTCTGTTGGCACGAGGATTGATTC
TCCAAGAACGTAGGGTACGAGAAGCAATGAGGAGAGTGGATCCTGAGGGA
GTAATAGTTCGGTCATTACAGTCAAGAGTAGTTTTAAGAAGAAAATATCG
CGTCGCTGGTCCTCTGTCATTGTGGCACATGGATGGAAATCATAAACTAA
TTAGATGCCAGGACGTCACAGATACTATGAAGAAGCAATGTATTATGGGA
TTGATCGATCATCAAATGTTGATAATACTCGGCAAGAAGATGAATATAAG
CATGTTTTTGTTCCATCAATTGAACCGAATGTTCCAGAGGACCTGATGAT
TGTAATCAATAACAGTTTTGGCCCTTTAGTTGACAGCGATGCAGACGAAG
ATCATGGCGTATCAACGTATCTTCGGTTGCGTAATTTCTTGTATTCTTGT
ATATCTGCGCTAAATTTAAGTAGGGTCTTTGTAAATTTTTGTAGAAATAA
AGCTAACGATAAGAAATTACTTTAGTTACAGGATGGTTATACACGGGTGT
ATTGATGGCTACTCTAGGCGTATTATTTACCTATCATGTGCTAACAATAA
TCAAGCTGCTACTGTATTGGAAATTTTCAAAAAAACTATCTGTATACACG
GTCTTCCTTCAAGAGTTCGAGGTGATCACGGTGGTGAAAACGTTGACGTT
GCTCGTTTTATGTTAATGCATCCTTTACGTGGCCTTGGGAGAGGCAGCTT
TATTGCTTCCAAGAGTGTGCATAATCAGCGCATTGAACGCTTGTGGGTTG
ACGTTTATCACGGAGCTACTAAATTATTTCAGACAATTTTTCTCAGTTTA
GAGAATACTGGAAATTTGAACTTGTCGTCTGAAATAGATTTGTTTGCATT
GCATTTTGTCTACATTACAAAAATCAATAAATCTTTAAAAGCATTTGTCA
ATGGTTGGAACCACCACCCACTAAGTACGGAAAACAACAAAACACCCAAT
CAACTGTGGATTTCTGGACTGCATAAAATCGCTGGTACAGGCTCAAAGAT
AGATGAAGAAATATGGGAACCAAAAACTGACTTACAACCGAGTGGACTGA
ACGTTATCATTGAACACATTGAGAAGATTTTCCATCAAATAAAGTCAATA
ATTAAAATGCCCGACGCAAGTATGGATGACTTAGAGGGTGTGTTTAGCAC
TTTATGCAGAACGGAAAGAATTTTGACTGACTTGGAAACTCTATATAATG
TGCGGGAGTTTTCTATAATCAATCGATGTATTTATAAGCTAAAGGATGAG
CTTAAAATAGAAAAAATGGTAATTCAACCCGTGAAAGTTGTTCAAAAAGT
ACCACAAGAAATCGGACCTCCAAAATACTTTATCCCTGTTGAAGTGCTTG
AATATTATGTTGAAAACGGATTTAAAAATGTTGATATTGCGAAGATGCTA
CATGTAAGCCTCAGTACTATTAAAAGACGGCTTAGTGAAAACACTCTAAA
CAAAAAAGATAAGTTCAGCAAGATGACAGACGATGAACTTGATGTAGTGG
TAAATGAAATTCTTGTGGATCATCCTAATACTGGTTACAAGAAGATGAGG
GGTTTTCTGTTGGCACGAGGATTGATTCTCCAAGAACGTAGGGTACGAGA
AGCAATGAGGAGAGTGGATCCTGAGGGAGTAATAGTTCGGTCATTACAGT
CAAGAGTAGTTTTAAGAAGAAAATATCGCGTCGCTGGTCCTCTGTCATTG
TGGCACATGGATGGAAATCATAAACTAATTAGATGCCAGGACGTCACAGA
TACTATGAAGAAGCAATGTATTATGGGATTGATCGATCATCAAATGTTGA
TAATACTCGGCAAGAAGATGAATATAAGCATGTTTTTGTTCCATCAATTG
AACCGAATGTTCCAGAGGACCTGATGATTGTAATCAATAACAGTTTTGGC
CCTTTAGTTGACAGCGATGCAGACGAAGATCATGGCGTATCAACGTATCT
TCGGTTGCGTAATTTCTTGTATTCTTGTATATCTGCGCTAAATTTAAGTA
GGGTCTTTGTAAATTTTTGTAGAAATAAAGCTAACGATAAGAAATTACTT
TAGTTACAGGATGGTTATACACGGGTGTATTGATGGCTACTCTAGGCGTA
TTATTTACCTATCATGTGCTAACAATAATCAAGCTGCTACTGTATTGGAA
ATTTTCAAAAAAACTATCTGTATACACGGTCTTCCTTCAAGAGTTCGAGG
TGATCACGGTGGTGAAAACGTTGACGTTGCTCGTTTTATGTTAATGCATC
CTTTACGTGGCCTTGGGAGAGGCAGCTTTATTGCTTCCAAGAGTGTGCAT
AATCAGCGCATTGAACGCTTGTGGGTTGACGTTTATCACGGAGCTACTAA
ATTATTTCAGACAATTTTTCTCAGTTTAGAGAATACTGGAAATTTGAACT
TGTCGTCTGAAATAGATTTGTTTGCATTGCATTTTGTCTACATTACAAAA
ATCAATAAATCTTTAAAAGCATTTGTCAATGGTTGGAACCACCACCCACT
AAGTACGGAAAACAACAAAACACCCAATCAACTGTGGATTTCTGGACTGC
ATAAAATCGCTGGTACAGGCTCAAAGATAGATGAAGAAATATGGGAACCA
AAAACTGACTTACAACCGAGTGGACTGAACGTTATCATTGAACACATTGA
GAAGATTTTCCATCAAATAAAGTCAATAATTAAAATGCCCGACGCAAGTA
TGGATGACTTAGAGGGTGTGTTTAGCACTTTATGCAGAACGGAAAGAATT
TTGACTGACTTGGAAACTCTATATAATGTGCGGGAGTTTTCTATAATCAA
TCGATGTATTTATAAGCTAAAGGATGAGCTTAAAATAGAAAAAATGGTAA
TTCAACCCGTGAAAGTTGTTCAAAAAGTACCACAAGAAATCGGACCTCCA
AAATACTTTATCCCTGTTGAAGTGCTTGAATATTATGTTGAAAACGGATT
TAAAAATGTTGATATTGCGAAGATGCTACATGTAAGCCTCAGTACTATTA
AAAGACGGCTTAGTGAAAACACTCTAAACAAAAAAGATAAGTTCAGCAAG
ATGACAGACGATGAACTTGATGTAGTGGTAAATGAAATTCTTGTGGATCA
TCCTAATACTGGTTACAAGAAGATGAGGGGTTTTCTGTTGGCACGAGGAT
TGATTCTCCAAGAACGTAGGGTACGAGAAGCAATGAGGAGAGTGGATCCT
GAGGGAGTAATAGTTCGGTCATTACAGTCAAGAGTAGTTTTAAGAAGAAA
ATATCGCGTCGCTGGTCCTCTGTCATTGTGGCACATGGATGGAAATCATA
AACTAATTAGATGCCAGGACGTCACAGATACTATGAAGAAGCAATGTATT
ATGGGATTGATCGATCATCAAATGTTGATAATACTCGGCAAGAAGATGAA
TATAAGCATGTTTTTGTTCCATCAATTGAACCGAATGTTCCAGAGGACCT
GATGATTGTAATCAATAACAGTTTTGGCCCTTTAGTTGACAGCGATGCAG
ACGAAGATCATGGCGTATCAACGTATCTTCGGTTGCGTAATTTCTTGTAT
TCTTGTATATCTGCGCTAAATTTAAGTAGGGTCTTTGTAAATTTTTGTAG
AAATAAAGCTAACGATAAGAAATTACTTTAGTTACAGGATGGTTATACAC
GGGTGTATTGATGGCTACTCTAGGCGTATTATTTACCTATCATGTGCTAA
CAATAATCAAGCTGCTACTGTATTGGAAATTTTCAAAAAAACTATCTGTA
TACACGGTCTTCCTTCAAGAGTTCGAGGTGATCACGGTGGTGAAAACGTT
GACGTTGCTCGTTTTATGTTAATGCATCCTTTACGTGGCCTTGGGAGAGG
CAGCTTTATTGCTTCCAAGAGTGTGCATAATCAGCGCATTGAACGCTTGT
GGGTTGACGTTTATCACGGAGCTACTAAATTATTTCAGACAATTTTTCTC
AGTTTAGAGAATACTGGAAATTTGAACTTGTCGTCTGAAATAGATTTGTT
TGCATTGCATTTTGTCTACATTACAAAAATCAATAAATCTTTAAAAGCAT
TTGTCAATGGTTGGAACCACCACCCACTAAGTACGGAAAACAACAAAACA
CCCAATCAACTGTGGATTTCTGGACTGCATAAAATCGCTGGTACAGGCTC
AAAGATAGATGAAGAAATATGGGAACCAAAAACTGACTTACAACCGAGTG
GACTGAACGTTATCATTGAACACATTGAGAAGATTTTCCATCAAATAAAG
TCAATAATTAAAATGCCCGACGCAAGTATGGATGACTTAGAGGGTGTGTT
TAGCACTTTATGCAGAACGGAAAGAATTTTGACTGACTTGGAAACTCTAT
ATAATGTGCGGGAGTTTTCTATAATCAATCGATGTATTTATAAGCTAAAG
GATGAGCTTAAAATAGAAAAAATGGTAATTCAACCCGTGAAAGTTGTTCA
AAAAGTACCACAAGAAATCGGACCTCCAAAATACTTTATCCCTGTTGAAG
TGCTTGAATATTATGTTGAAAACGGATTTAAAAATGTTGATATTGCGAAG
ATGCTACATGTAAGCCTCAGTACTATTAAAAGACGGCTTAGTGAAAACAC
TCTAAACAAAAAAGATAAGTTCAGCAAGATGACAGACGATGAACTTGATG
TAGTGGTAAATGAAATTCTTGTGGATCATCCTAATACTGGTTACAAGAAG
ATGAGGGGTTTTCTGTTGGCACGAGGATTGATTCTCCAAGAACGTAGGGT
ACGAGAAGCAATGAGGAGAGTGGATCCTGAGGGAGTAATAGTTCGGTCAT
TACAGTCAAGAGTAGTTTTAAGAAGAAAATATCGCGTCGCTGGTCCTCTG
TCATTGTGGCACATGGATGGAAATCATAAACTAATTAGATGCCAGGACGT
CACAGATACTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022811XLOC_022811Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038173-exon-sc0001790-1575043694:11989..12083TCONS_00038173-exon-sc0001790-1575043694:11989..12083Clytia hemisphaericaexon
TCONS_00038173-exon-sc0001790-1575043694:10853..11553TCONS_00038173-exon-sc0001790-1575043694:10853..11553Clytia hemisphaericaexon
TCONS_00038173-exon-sc0001790-1575043694:9331..9886TCONS_00038173-exon-sc0001790-1575043694:9331..9886Clytia hemisphaericaexon
TCONS_00038173-exon-sc0001790-1575043694:8169..8649TCONS_00038173-exon-sc0001790-1575043694:8169..8649Clytia hemisphaericaexon
TCONS_00038173-exon-sc0001790-1510915933:11989..12083TCONS_00038173-exon-sc0001790-1510915933:11989..12083Clytia hemisphaericaexon
TCONS_00038173-exon-sc0001790-1510915933:10853..11553TCONS_00038173-exon-sc0001790-1510915933:10853..11553Clytia hemisphaericaexon
TCONS_00038173-exon-sc0001790-1510915933:9331..9886TCONS_00038173-exon-sc0001790-1510915933:9331..9886Clytia hemisphaericaexon
TCONS_00038173-exon-sc0001790-1510915933:8169..8649TCONS_00038173-exon-sc0001790-1510915933:8169..8649Clytia hemisphaericaexon
TCONS_00038173-exon-sc0001790-1491911889:11989..12083TCONS_00038173-exon-sc0001790-1491911889:11989..12083Clytia hemisphaericaexon
TCONS_00038173-exon-sc0001790-1491911889:10853..11553TCONS_00038173-exon-sc0001790-1491911889:10853..11553Clytia hemisphaericaexon
TCONS_00038173-exon-sc0001790-1491911889:9331..9886TCONS_00038173-exon-sc0001790-1491911889:9331..9886Clytia hemisphaericaexon
TCONS_00038173-exon-sc0001790-1491911889:8169..8649TCONS_00038173-exon-sc0001790-1491911889:8169..8649Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038173-proteinTCONS_00038173-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001790supercontigsc0001790:8169..12083 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0213032	0.024735	0.0241994	5.68954	6.37739	5.50493	6.48669	2.64273	3.96766	3.82898	1.88413	2.65881	2.39908	0	0.046593	0	0.0672364	0.034834	0.0243009	0.0105609	0.0154538	0	0.0227723	0.867834	1.86304	0	0	0.0363709	0.0247041
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_dom
IPR001584Integrase_cat-core
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038173 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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