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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038172 ID=TCONS_00038172|Name=TCONS_00038172|organism=Clytia hemisphaerica|type=transcript|length=1833bp
aaataaaataaaataagagcTAGAAACTTGAAGAAAAAGTTTATGGTCAT
CAATATACCAATACATTTGACATGCCAGGACGTCACAGATACTATTTACA
ACCGAGTGGACTGAACGTTATCATTGAACACATTGAGAAGATTTTCCATC
AAATAAAGTCAATAATTAAAATGCCCGACGCAAGTATGGATGACTTAGAG
GGTGTGTTTAGCACTTTATGCAGAACGGAAAGAATTTTGACTGACTTGGA
AACTCTATATAATGTGCGGGAGTTTTCTATAATCAATCGATGTATTTATA
AGCTAAAGGATGAgcttaaaatagaaaaaatggtAATTCAACCCGTGAAA
GTTGTTCAAAAAGTACCACAAGAAATCGGACCTCCAAAATACTTTATCCC
TGTTGAAGTGCTTGAATATTATGTTGAAAACGGATTTAAAAATGTTGATA
TTGCGAAGATGCTACATGTAAGCCTCAGTACTATTAAAAGACGGCttagt
gaaaacactctaaacAAAAAAGATAAGTTCAGCAAGATGACAGACGATGA
ACTTGATGTAGTGGTAAATGAAATTCTTGTGGATCATCCTAATACTGGTT
ACAAGAAGATGAGGGGTTTTCTGTTGGCACGAGGATTGATTCTCCAAGAA
CGTAGGGTACGAGAAGCAATGAGGAGAGTGGATCCTGAGGGAGTAATAGT
TCGGTCATTACAGTCAAGAGTAGTTTTAAGAAGAAAATATCGCGTCGCTG
GTCCTCTGTCATTGTGGCACATGGATGGAAATCATAAACTAATTAGTTAC
AGGATGGTTATACACGGGTGTATTGATGGCTACTCTAGGCGTATTATTTA
CCTATCATGTGCTAACAATAATCAAGCTGCTACTGtattggaaattttca
aaaaaactatcTGTATACACGGTCTTCCTTCAAGAGTTCGAGGTGATCAC
GGTGGTGAAAACGTTGACGTTGCTCGTTTTATGTTAATGCATCCTTTACG
TGGCCTTGGGAGAGGCAGCTTTATTGCTTCCAAGAGTGTGCATAATCAGC
GCATTGAACGCTTGTGGGTTGACGTTTATCACGGAGCTACTAAATTATTT
CAGACAATTTTTCTCAGTTTAGAGAATACTGGAAATTTGAACTTGTCGTC
TGAAATAGATTTGTTTGCATTGCATTTTGTCTACAttacaaaaatcaata
aatctttAAAAGCGTTTGTCAATGGTTGGAACCACCACCCACTAAGTACG
GAAAACAACAAAACACCCAATCAACTGTGGATTTCTGGACTGCATAAAAT
TGCTGGTACAGGCTCAAAGATAGATGAAGAAATATGGGAACCAAAAACTG
ACGAAGAAGCAATGTATTATGGGATTGATCGATCATCAAATGTTGATAAT
ACTCGGCAAGAAGATGAATATAAGCATGTTTTTGTTCCATCAATTGAACC
GAATGTTCCAGAGGACCTGATGATTGTAATCAATAACAGTTTTGGCCCTT
TAGTTGACAGCGATGCAGACGAAGATCATGGCGTATCAACGTATCTTCGG
TTGCGTAATTTCTTGTATTCTTGTATATCTGCGCTAAATTTAAGTAGGgt
ctttgtaaatttttgtagaAATAAAGCTAACGATAAgaaattactttagg
cgtataTATTTTCACGAACAGAAGCTTTTTTGAGCAGGTCCAAAAATCGC
AAAATCTATTACGTCATTTAGTTTTCAAGTTCCAGAAACAATGTTTTTCT
CGCAAATTAATCCAGTCAACATTTGTGTGCCAAATTCGAGTTTGAGAAAG
CCGATTTTCGCAATTTTGACCTTTtactgccag Run BLAST on NCBI transcript from alignment at sc0001790:8169..12083- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038172 ID=TCONS_00038172|Name=TCONS_00038172|organism=Clytia hemisphaerica|type=transcript|length=3915bp|location=Sequence derived from alignment at sc0001790:8169..12083- (Clytia hemisphaerica)
AAATAAAATAAAATAAGAGCTAGAAACTTGAAGAAAAAGTTTATGGTCAT
CAATATACCAATACATTTGACATGCCAGGACGTCACAGATACTATGTAAT
TATTCAACTTTTTTTCGGTAGCGTGTCTTAATCATATGTGACTGGATTAT
GATTACATTGTCTTTTTCACCAGTCTCCTAAAATATCTTCAAATATTATA
CTAAGGTCAATGATAGTCCTGGGATCAAGGTTGGTATAAACTTAATATCA
ACCAATGAGAAGCCTGAACTGGTTAACTCATTAAGTGTCAATGGCATGGC
TTCATATGATATCGGCCGATTCCTAAACATAATGTCATCCTGTTTCTAAA
CCCGAAAAAAAACCATATCGAGAAGCGACAAATTTTTCTTACTTGGGGCG
TGATCGTGCATTTGAAGAAATCAAAAAATAAAATTTGAAATTACGGATTG
ATGGCATTTAATGGATTAACCAAAATCAATTAACAATAAATCAGTGTATT
CATTTATCATCTTATTATCTTCAATTTTAGTTACAACCGAGTGGACTGAA
CGTTATCATTGAACACATTGAGAAGATTTTCCATCAAATAAAGTCAATAA
TTAAAATGCCCGACGCAAGTATGGATGACTTAGAGGGTGTGTTTAGCACT
TTATGCAGAACGGAAAGAATTTTGACTGACTTGGAAACTCTATATAATGT
GCGGGAGTTTTCTATAATCAATCGATGTATTTATAAGCTAAAGGATGAGC
TTAAAATAGAAAAAATGGTAATTCAACCCGTGAAAGTTGTTCAAAAAGTA
CCACAAGAAATCGGACCTCCAAAATACTTTATCCCTGTTGAAGTGCTTGA
ATATTATGTTGAAAACGGATTTAAAAATGTTGATATTGCGAAGATGCTAC
ATGTAAGCCTCAGTACTATTAAAAGACGGCTTAGTGAAAACACTCTAAAC
AAAAAAGATAAGTTCAGCAAGATGACAGACGATGAACTTGATGTAGTGGT
AAATGAAATTCTTGTGGATCATCCTAATACTGGTTACAAGAAGATGAGGG
GTTTTCTGTTGGCACGAGGATTGATTCTCCAAGAACGTAGGGTACGAGAA
GCAATGAGGAGAGTGGATCCTGAGGGAGTAATAGTTCGGTCATTACAGTC
AAGAGTAGTTTTAAGAAGAAAATATCGCGTCGCTGGTCCTCTGTCATTGT
GGCACATGGATGGAAATCATAAACTAATTAGGTAAGAATATCCAATATAC
TGTAATATAAAGTATTTGCTGAAAGTGCACTCCTTGATTTAAATTTTCTG
GACGTTTTTCTTTATTTTCATAAATTTGATTTTTAGTGTCTAGGGACACT
TTTCAACCTTGGTACAATAAGGCTTCGAAATAATATGGAAAAAGTGGAGC
ATCACTGTGGTACACACCTTAGGGAATGTTTTACCGATAATGAATTGATA
CTGATATCATGATATTGTTTTAGTTACAGGATGGTTATACACGGGTGTAT
TGATGGCTACTCTAGGCGTATTATTTACCTATCATGTGCTAACAATAATC
AAGCTGCTACTGTATTGGAAATTTTCAAAAAAACTATCTGTATACACGGT
CTTCCTTCAAGAGTTCGAGGTGATCACGGTGGTGAAAACGTTGACGTTGC
TCGTTTTATGTTAATGCATCCTTTACGTGGCCTTGGGAGAGGCAGCTTTA
TTGCTTCCAAGAGTGTGCATAATCAGCGCATTGAACGCTTGTGGGTTGAC
GTTTATCACGGAGCTACTAAATTATTTCAGACAATTTTTCTCAGTTTAGA
GAATACTGGAAATTTGAACTTGTCGTCTGAAATAGATTTGTTTGCATTGC
ATTTTGTCTACATTACAAAAATCAATAAATCTTTAAAAGCGTTTGTCAAT
GGTTGGAACCACCACCCACTAAGTACGGAAAACAACAAAACACCCAATCA
ACTGTGGATTTCTGGACTGCATAAAATTGCTGGTACAGGCTCAAAGATAG
ATGAAGAAATATGGGAACCAAAAACTGACGTAGGTCTAAATTTGATATCA
AAATCATAGTATACCTTTTCNTTGATCACTTTTCAACCTTGGTACAATAA
GGCTTCGAAATAATATGGAAAAGAGCATCACTGTTACACACGTTAGGGAA
TGTTTTACCGATAATGAATTGATACTGATATCATGTAGTGTTTTTAGTTA
CAGGATGGTTATACACGGGTGTATTGATGGCTACTCTAGGCGTATTATTT
ACCTATCATGTGCTAACAATAATCAAGCTGCTACTGTATTGGAAATTTTC
AAAAAAACTATCTGTATACACGGTCTTCCTTCAAGAGTTCGAGGTGATCA
CGGTGGTGAAAACGTTGACGTTGCTCGTTTTATGTTAATGCATCCTTTAC
GTGGCCTTGGGAGAGGCAGCTTTATTGCTTCCAAGAGTGTGCATAATCAG
CGCATTGAACGCTTGTGGGTTGACGTTTATCACGGAGCTACTAAATTATT
TCAGACAATTTTTCTCAGTTTAGAGAATACTGGAAATTTGAACTTGTCGT
CTGAAATAGATTTGTTTGCATTGCATTTTGTCTACATTACAAAAATCAAT
AAATCTTTAAAAGCATTTGTCAATGGTTGGAACCACCACCCACTAAGTAC
GGAAAACAACAAAACACCCAATCAACTGTGGATTTCTGGACTGCATAAAA
TCGCTGGTACAGGCTCAAAGATAGATGAAGAAATATGGGAACCAAAAACT
GACGTAGGTCTAAATTTGATATCAAAATCATAGTATACCTTTTCAATCTT
AAAATTTTAAGATGCTCCCCTTTTACGAATTTAGAAAGATGCACGATAAC
TTTTAACTCTGTTTAACTAACAATATGTAAGGACCTACTCTTTCAAAAAC
TAATATACTTTGGATTCGTCAATTTTAAGAATTGTCTGCATAGATAGATC
GTCATACTGGGCCAAGGAACCCCAACTAAAACTTTTCCTGGTACTTCAAG
TAGTAAATTAATGAAATCTGGTAGAATTGGTTCATAAATGGCCCTTACGT
AGAATTTTCCCCTTTTTTAACTTGACAGGTTTTGGGTAGGGTTTGTCGGA
TGTCGGCATGCTGATCTTAGTTCGGCGAAAAAAACACCATTAAACGCAAA
AAATTTTGAAATGTTGCAAATAGTTGCAATAACAGATTCCTGAGCTATTT
CATATGGCCTTTTAACTCCTTCAATACAGTGGGAAACCTAAATTTTTTTT
ATTTTTTTTCTAATAATGATGATGTTTCAAAAGCAAAAGCAAAACATGTC
ATATTTGAGTTTGTTAGTTCTTTTCAAGAGCTATCTTTTTAGTGAGCCAA
TTTTAAAGTTTTAAGGACCTAACAAAATTACCAGCTCGGAATAAGATTAA
TACATTTTTTTTTTGTTTTCGATAAAAACTTCAGGAAGAAGCAATGTATT
ATGGGATTGATCGATCATCAAATGTTGATAATACTCGGCAAGAAGATGAA
TATAAGCATGTTTTTGTTCCATCAATTGAACCGAATGTTCCAGAGGACCT
GATGATTGTAATCAATAACAGTTTTGGCCCTTTAGTTGACAGCGATGCAG
ACGAAGATCATGGCGTATCAACGTATCTTCGGTTGCGTAATTTCTTGTAT
TCTTGTATATCTGCGCTAAATTTAAGTAGGGTCTTTGTAAATTTTTGTAG
AAATAAAGCTAACGATAAGAAATTACTTTAGGCGTATATATTTTCACGAA
CAGAAGCTTTTTTGAGCAGGTCCAAAAATCGCAAAATCTATTACGTCATT
TAGTTTTCAAGTTCCAGAAACAATGTTTTTCTCGCAAATTAATCCAGTCA
ACATTTGTGTGCCAAATTCGAGTTTGAGAAAGCCGATTTTCGCAATTTTG
ACCTTTTACTGCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038172-exon-sc0001790-1575043694:11989..12083 | TCONS_00038172-exon-sc0001790-1575043694:11989..12083 | Clytia hemisphaerica | exon |
| TCONS_00038172-exon-sc0001790-1575043694:10853..11553 | TCONS_00038172-exon-sc0001790-1575043694:10853..11553 | Clytia hemisphaerica | exon |
| TCONS_00038172-exon-sc0001790-1575043694:10055..10610 | TCONS_00038172-exon-sc0001790-1575043694:10055..10610 | Clytia hemisphaerica | exon |
| TCONS_00038172-exon-sc0001790-1575043694:8169..8649 | TCONS_00038172-exon-sc0001790-1575043694:8169..8649 | Clytia hemisphaerica | exon |
| TCONS_00038172-exon-sc0001790-1510915933:11989..12083 | TCONS_00038172-exon-sc0001790-1510915933:11989..12083 | Clytia hemisphaerica | exon |
| TCONS_00038172-exon-sc0001790-1510915933:10853..11553 | TCONS_00038172-exon-sc0001790-1510915933:10853..11553 | Clytia hemisphaerica | exon |
| TCONS_00038172-exon-sc0001790-1510915933:10055..10610 | TCONS_00038172-exon-sc0001790-1510915933:10055..10610 | Clytia hemisphaerica | exon |
| TCONS_00038172-exon-sc0001790-1510915933:8169..8649 | TCONS_00038172-exon-sc0001790-1510915933:8169..8649 | Clytia hemisphaerica | exon |
| TCONS_00038172-exon-sc0001790-1491911889:11989..12083 | TCONS_00038172-exon-sc0001790-1491911889:11989..12083 | Clytia hemisphaerica | exon |
| TCONS_00038172-exon-sc0001790-1491911889:10853..11553 | TCONS_00038172-exon-sc0001790-1491911889:10853..11553 | Clytia hemisphaerica | exon |
| TCONS_00038172-exon-sc0001790-1491911889:10055..10610 | TCONS_00038172-exon-sc0001790-1491911889:10055..10610 | Clytia hemisphaerica | exon |
| TCONS_00038172-exon-sc0001790-1491911889:8169..8649 | TCONS_00038172-exon-sc0001790-1491911889:8169..8649 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001790 | supercontig | sc0001790:8169..12083 - |
Blast
The following BLAST results are available for this feature:
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