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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038171 ID=TCONS_00038171|Name=TCONS_00038171|organism=Clytia hemisphaerica|type=transcript|length=1237bp
CTGGGATTTCCTTTTGAGTAATTGGCTTCTTTCCTCTGACCTTCTTCGCG
AAGTTGAGTTCAGCGAAATCGATTGAAATAACGTCATCTTTGGAGAACCA
TTGAATACCTCCAACGTGGATACTTTAATCGTCAGCAGAAAGTTTGTCGA
TTGGATCTTTTCCTGAAAAGGTGAATCCTTTAAGTCCAAATCCTCCCTTT
GAGCAGACAATCTCCATTTCATCGGCTCTTTGCATGGCAAGGTCGATGGA
TTCCTCACCGGTGAAGCAGTCATCGACATACACATCTCTTTCGATTATCT
TACGTCTGGATATTGCTCTTTCATAAGGTGGGCGGTTTGGCGGAGTCCAC
GTTCCGATTAATTCCCTGACGATTTAACACCGTAGATTAGTGTTTTTATG
ATCTTTTCTTCGGGAGATGATCCAACGTTGAGGGAATCGTTCCAGAGATA
GCGTTGGTGACACCAGTCGGGTTCGGCAAGCTTAATCGAGTTGTACATCT
TAGCAATGTCTTTATGGAAGGCGATTCTTTGAGCGAACCAACGAATGAAG
ATGTCGACGAGTCTGTTCATGCCGTTGGAGCCTTTGGCGAGGATTGAATT
GAGTGAGTGACTACTTCCAATCGGCTGCGAAGCGTCGAAGACTATACGAC
ACGGAGTTGATAACAAATTCGGTTTCCACACCGCCCTCCAGGGGATGTAG
TTCTTTGTGACGTTGGCTTGAAGTGCGTGCTGTGATTTGATTGGGAGATT
GCGAACAAAGTCAACGTGACCGAGGTCTTGGAGTTTACGTTCAGACTTGA
TAACATCTTGTTTGTTTTGTTCGTACTTGTTGAGTCGGTTGACTTGTTGA
AGGTAAACTTTCATCGCCTTGTTTCGAATTGTGTCCAGTCGATGGACATA
ACTACAATGGTAAAGTCGAACGACGAATTTGTGAAATCAAGCAATCACTG
ACGAAAAGTTATAACGATTATAACGTTTATCTGTTCTCCAGTGGGAGACA
GTTGCATCAAAGATATCGAATTGTATCAACGACCTTCCAATCTCACTCGG
TAATTATGTTTCTGATTTTGAATCAATGGACTTGGTAACCCCAAATAGAC
TGAAACTTGGGCGCAATAACGAATGAAGTCCTGTAGGTCCATTTGAATTG
TCCAATGACTCTTCGAGAATTATCCAAACCAACTCGTTAATATATCAATC
TTGGTTTGATAGTTGGCTTGTCAATCATGTGCCTAAA Run BLAST on NCBI protein sequence of TCONS_00038171-protein >TCONS_00038171-protein ID=TCONS_00038171-protein|Name=TCONS_00038171-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
MKVYLQQVNRLNKYEQNKQDVIKSERKLQDLGHVDFVRNLPIKSQHALQA
NVTKNYIPWRAVWKPNLLSTPCRIVFDASQPIGSSHSLNSILAKGSNGMN
RLVDIFIRWFAQRIAFHKDIAKMYNSIKLAEPDWCHQRYLWNDSLNVGSS
PEEKIIKTLIYGVKSSGN Run BLAST on NCBI transcript from alignment at sc0001789:21951..23187 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038171 ID=TCONS_00038171|Name=TCONS_00038171|organism=Clytia hemisphaerica|type=transcript|length=1237bp|location=Sequence derived from alignment at sc0001789:21951..23187 (Clytia hemisphaerica)
TTTAGGCACATGATTGACAAGCCAACTATCAAACCAAGATTGATATATTA
ACGAGTTGGTTTGGATAATTCTCGAAGAGTCATTGGACAATTCAAATGGA
CCTACAGGACTTCATTCGTTATTGCGCCCAAGTTTCAGTCTATTTGGGGT
TACCAAGTCCATTGATTCAAAATCAGAAACATAATTACCGAGTGAGATTG
GAAGGTCGTTGATACAATTCGATATCTTTGATGCAACTGTCTCCCACTGG
AGAACAGATAAACGTTATAATCGTTATAACTTTTCGTCAGTGATTGCTTG
ATTTCACAAATTCGTCGTTCGACTTTACCATTGTAGTTATGTCCATCGAC
TGGACACAATTCGAAACAAGGCGATGAAAGTTTACCTTCAACAAGTCAAC
CGACTCAACAAGTACGAACAAAACAAACAAGATGTTATCAAGTCTGAACG
TAAACTCCAAGACCTCGGTCACGTTGACTTTGTTCGCAATCTCCCAATCA
AATCACAGCACGCACTTCAAGCCAACGTCACAAAGAACTACATCCCCTGG
AGGGCGGTGTGGAAACCGAATTTGTTATCAACTCCGTGTCGTATAGTCTT
CGACGCTTCGCAGCCGATTGGAAGTAGTCACTCACTCAATTCAATCCTCG
CCAAAGGCTCCAACGGCATGAACAGACTCGTCGACATCTTCATTCGTTGG
TTCGCTCAAAGAATCGCCTTCCATAAAGACATTGCTAAGATGTACAACTC
GATTAAGCTTGCCGAACCCGACTGGTGTCACCAACGCTATCTCTGGAACG
ATTCCCTCAACGTTGGATCATCTCCCGAAGAAAAGATCATAAAAACACTA
ATCTACGGTGTTAAATCGTCAGGGAATTAATCGGAACGTGGACTCCGCCA
AACCGCCCACCTTATGAAAGAGCAATATCCAGACGTAAGATAATCGAAAG
AGATGTGTATGTCGATGACTGCTTCACCGGTGAGGAATCCATCGACCTTG
CCATGCAAAGAGCCGATGAAATGGAGATTGTCTGCTCAAAGGGAGGATTT
GGACTTAAAGGATTCACCTTTTCAGGAAAAGATCCAATCGACAAACTTTC
TGCTGACGATTAAAGTATCCACGTTGGAGGTATTCAATGGTTCTCCAAAG
ATGACGTTATTTCAATCGATTTCGCTGAACTCAACTTCGCGAAGAAGGTC
AGAGGAAAGAAGCCAATTACTCAAAAGGAAATCCCAG Coding sequence (CDS) from alignment at sc0001789:21951..23187 >TCONS_00038171 ID=TCONS_00038171|Name=TCONS_00038171|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0001789:21951..23187 (Clytia hemisphaerica)
ATGAAAGTTTACCTTCAACAAGTCAACCGACTCAACAAGTACGAACAAAA
CAAACAAGATGTTATCAAGTCTGAACGTAAACTCCAAGACCTCGGTCACG
TTGACTTTGTTCGCAATCTCCCAATCAAATCACAGCACGCACTTCAAGCC
AACGTCACAAAGAACTACATCCCCTGGAGGGCGGTGTGGAAACCGAATTT
GTTATCAACTCCGTGTCGTATAGTCTTCGACGCTTCGCAGCCGATTGGAA
GTAGTCACTCACTCAATTCAATCCTCGCCAAAGGCTCCAACGGCATGAAC
AGACTCGTCGACATCTTCATTCGTTGGTTCGCTCAAAGAATCGCCTTCCA
TAAAGACATTGCTAAGATGTACAACTCGATTAAGCTTGCCGAACCCGACT
GGTGTCACCAACGCTATCTCTGGAACGATTCCCTCAACGTTGGATCATCT
CCCGAAGAAAAGATCATAAAAACACTAATCTACGGTGTTAAATCGTCAGG
GAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038171-exon-sc0001789-1491911889:21951..23187 | TCONS_00038171-exon-sc0001789-1491911889:21951..23187 | Clytia hemisphaerica | exon |
| TCONS_00038171-exon-sc0001789-1510915933:21951..23187 | TCONS_00038171-exon-sc0001789-1510915933:21951..23187 | Clytia hemisphaerica | exon |
| TCONS_00038171-exon-sc0001789-1575043694:21951..23187 | TCONS_00038171-exon-sc0001789-1575043694:21951..23187 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001789 | supercontig | sc0001789:21951..23187 . |
Blast
The following BLAST results are available for this feature:
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