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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038170 ID=TCONS_00038170|Name=TCONS_00038170|organism=Clytia hemisphaerica|type=transcript|length=2396bp
CGCCAGAACAACCTAGAACAACCCAGAACAAGCCGGAACAACCCAGAACA
ACCCATAACAAGCCAGAACAACCTGTGCGCGCTAAACTCGAACCAACTCG
CTAACTCGCTGCCTCGCCGAAAGCTAACTCGCCGGCGCGCGCTGCAGAAT
TTCAAAATCTTCGAAGAAAatcctctttttcaaaatggcgtcgAGGCATG
AAGAGTTAAAGCTCCTGTCAACGCTACTCGACGCTGACGATGTAAGTAAT
TTACTCGATTCGTGTCAAATTATTGTTTCTTTGAATGATTCTTAGAGTAA
TTAATGTGCTTCATTGTCTTTGTAACTAGATAATATAGCAGATGTCGAAG
ATAATTTGGGATTTGAGTTAAGGGTAATGAATGAGATCAGAGATTAGATA
TATATAAACAACGACCATGTGTACGAAACTTGAGACTTTTTTACCTCCAC
GAGTCTCGAGTAGGGTTATCAAAACACTATGATTCAAAAATCAATCCTTC
GTATGGTGCCTTCTGTGGAAAAACTGGGACAAAAGTAGATAATTTTATTC
CATCGATTTGCTTCTGTTAATGATCGATTGATTGATTCACCACTGCTTTG
CTTGCGTTCACTCCGCCAAAGTTGTAAGGGCCACTTCACACATGGGAAAC
AACTTTTTAAGAGGAAAATAGGCCTAAATTAACTTGCTTAGTGCACAggg
ccagacaatctcaatcgaacggaatcgacgattgaaccaatcgaacgcaa
tcgaacaattgaaattcgattgtcgaacgcaatcgaatctcaatcgaacg
tcaaaattctgggtaatgttcgattggttcgattgttgttcgactgcaTT
CGATTATCGTTTGATTGCATTTAACATAAAGCAAAGAAGAGTGTTTGACG
CCCTTTGATGTCCCGTCGGGATCAGCTACCCTAAGAGTTGTATTACGGAA
CTTAACTGTAAAATCTGTGACACAGTAAGGCAGAATTCTGTAATCCAAAC
Ctccgaacgtaatcgaacatcaatcgaatgcaatcgaatatcaatcgaat
ctgaaaattacgGTAGTattcgattgaaattcgattgcgttcgacaatcg
aatttcaatcggtcgattgcgttcgatttggctCGATTGgtttgatcgtc
gattccgttcgattgagatcgtctggacagGGCTGCTTCAGCCAGAGTGA
GTCAGGCATGATGTATAACCTCTATTCAACAAGTTTCCAGACGATATCAA
TCGAATGGAATCGACGATGGTCGATGGAaccaattgaacgcaatcgaccg
attgaaattcgattgtcgaacgcaatctcGGGGGCAGAGTTTGTCCAATT
TTAAGGGCAGGggtgaaattttgataattttccagTCTCAGGGGCAAAAT
TACTGAAAATTGGCCTATTTTATTACTTCTGGCTTTTAACAGCTTTTTTG
GTTGGGTACACAAAGTTTAGGGGCAGTATTtcaatgttattatttttcct
TTGGGGCATCTATGACATCCATGACATTCTCTGAAAACTGGACGTTTGAT
cttgttcgattacgttcgatcttgttcgattacgttcatCATCCTCATCT
GTGAATGCATCCTGAGCTTAGGGGGGTGGCTAaacaatttttgcttaatt
gGGGGCTGTACTTTTTAAAAAGTACTGGGGGCTGAGTGTTTAGTAATAGA
ACTGGGTGCAGAGCTGTTAGGTTACAaacattttcactaaaaagtggtat
tatatttgccagacATTTATAATTATGCTAAAAAGCTATGCTCTGGGGAA
GGTTTTGACCcctcttaaaaaaattttcatcgaGAATTTGCATGCAGAAT
TTCTAtgatattttgttttgtgaaggtgggggctaattttttttgccaga
CTTCAttttcccttccctttttacgAAAAACAAATAGAGAGAAAACAAGG
CAATTGATTTTTAGAAGGGTGTAGCAGCAAGAAGGGGATTATCGGATCGC
ACTATACATaacatattcttaaaaatttagcccaaaacaCTGGGGGACAC
TACCAGACATGCAGCCCTTATGGGTaggttttttgtattttggaaagtgc
actgtactgaaaagggcaaaaaatttagaaaaaaaatttagagacctgat
ttatGGCTGAACCCACGGGGGATCCCCTTTCCGCACTAAGTGCAAAATGG
TTGAAAAGTTACTGCCTAAAAAACACTGCACACCTTTTTGACGCAAACTT
AAGTTTGATTAGTACTCCATGAAATTGATTAATGGAAAACTAATTGATTC
AATTAGCTTGATCAAAGTCAATGATTTtggtaatcaaatttttttattag
ttACGTCCGGTCAATACaaccaaaaactaaaaaattttgaatatcg Run BLAST on NCBI transcript from alignment at sc0001789:12866..15261 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038170 ID=TCONS_00038170|Name=TCONS_00038170|organism=Clytia hemisphaerica|type=transcript|length=2396bp|location=Sequence derived from alignment at sc0001789:12866..15261 (Clytia hemisphaerica)
cgatattcaaaattttttagtttttggttGTATTGACCGGACGTaactaa
taaaaaaatttgattaccaAAATCATTGACTTTGATCAAGCTAATTGAAT
CAATTAGTTTTCCATTAATCAATTTCATGGAGTACTAATCAAACTTAAGT
TTGCGTCAAAAAGGTGTGCAGTGTTTTTTAGGCAGTAACTTTTCAACCAT
TTTGCACTTAGTGCGGAAAGGGGATCCCCCGTGGGTTCAGCCataaatca
ggtctctaaattttttttctaaattttttgcccttttcagtacagtgcac
tttccaaaatacaaaaaacctACCCATAAGGGCTGCATGTCTGGTAGTGT
CCCCCAGtgttttgggctaaatttttaagaatatgttATGTATAGTGCGA
TCCGATAATCCCCTTCTTGCTGCTACACCCTTCTAAAAATCAATTGCCTT
GTTTTCTCTCTATTTGTTTTTcgtaaaaagggaagggaaaaTGAAGtctg
gcaaaaaaaattagcccccaccttcacaaaacaaaatatcaTAGAAATTC
TGCATGCAAATTCtcgatgaaaatttttttaagaggGGTCAAAACCTTCC
CCAGAGCATAGCTTTTTAGCATAATTATAAATgtctggcaaatataatac
cactttttagtgaaaatgttTGTAACCTAACAGCTCTGCACCCAGTTCTA
TTACTAAACACTCAGCCCCCAGTACTTTTTAAAAAGTACAGCCCCcaatt
aagcaaaaattgttTAGCCACCCCCCTAAGCTCAGGATGCATTCACAGAT
GAGGATGatgaacgtaatcgaacaagatcgaacgtaatcgaacaagATCA
AACGTCCAGTTTTCAGAGAATGTCATGGATGTCATAGATGCCCCAAagga
aaaataataacattgaAATACTGCCCCTAAACTTTGTGTACCCAACCAAA
AAAGCTGTTAAAAGCCAGAAGTAATAAAATAGGCCAATTTTCAGTAATTT
TGCCCCTGAGActggaaaattatcaaaatttcaccCCTGCCCTTAAAATT
GGACAAACTCTGCCCCCgagattgcgttcgacaatcgaatttcaatcggt
cgattgcgttcaattggtTCCATCGACCATCGTCGATTCCATTCGATTGA
TATCGTCTGGAAACTTGTTGAATAGAGGTTATACATCATGCCTGACTCAC
TCTGGCTGAAGCAGCCctgtccagacgatctcaatcgaacggaatcgacg
atcaaacCAATCGagccaaatcgaacgcaatcgaccgattgaaattcgat
tgtcgaacgcaatcgaatttcaatcgaatACTACcgtaattttcagattc
gattgatattcgattgcattcgattgatgttcgattacgttcggaGGTTT
GGATTACAGAATTCTGCCTTACTGTGTCACAGATTTTACAGTTAAGTTCC
GTAATACAACTCTTAGGGTAGCTGATCCCGACGGGACATCAAAGGGCGTC
AAACACTCTTCTTTGCTTTATGTTAAATGCAATCAAACGATAATCGAAtg
cagtcgaacaacaatcgaaccaatcgaacattacccagaattttgacgtt
cgattgagattcgattgcgttcgacaatcgaatttcaattgttcgattgc
gttcgattggttcaatcgtcgattccgttcgattgagattgtctggcccT
GTGCACTAAGCAAGTTAATTTAGGCCTATTTTCCTCTTAAAAAGTTGTTT
CCCATGTGTGAAGTGGCCCTTACAACTTTGGCGGAGTGAACGCAAGCAAA
GCAGTGGTGAATCAATCAATCGATCATTAACAGAAGCAAATCGATGGAAT
AAAATTATCTACTTTTGTCCCAGTTTTTCCACAGAAGGCACCATACGAAG
GATTGATTTTTGAATCATAGTGTTTTGATAACCCTACTCGAGACTCGTGG
AGGTAAAAAAGTCTCAAGTTTCGTACACATGGTCGTTGTTTATATATATC
TAATCTCTGATCTCATTCATTACCCTTAACTCAAATCCCAAATTATCTTC
GACATCTGCTATATTATCTAGTTACAAAGACAATGAAGCACATTAATTAC
TCTAAGAATCATTCAAAGAAACAATAATTTGACACGAATCGAGTAAATTA
CTTACATCGTCAGCGTCGAGTAGCGTTGACAGGAGCTTTAACTCTTCATG
CCTcgacgccattttgaaaaagaggatTTTCTTCGAAGATTTTGAAATTC
TGCAGCGCGCGCCGGCGAGTTAGCTTTCGGCGAGGCAGCGAGTTAGCGAG
TTGGTTCGAGTTTAGCGCGCACAGGTTGTTCTGGCTTGTTATGGGTTGTT
CTGGGTTGTTCCGGCTTGTTCTGGGTTGTTCTAGGTTGTTCTGGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038170-exon-sc0001789-1491911889:12866..15261 | TCONS_00038170-exon-sc0001789-1491911889:12866..15261 | Clytia hemisphaerica | exon |
| TCONS_00038170-exon-sc0001789-1510915933:12866..15261 | TCONS_00038170-exon-sc0001789-1510915933:12866..15261 | Clytia hemisphaerica | exon |
| TCONS_00038170-exon-sc0001789-1575043694:12866..15261 | TCONS_00038170-exon-sc0001789-1575043694:12866..15261 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001789 | supercontig | sc0001789:12866..15261 . |
Blast
The following BLAST results are available for this feature:
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