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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038167 ID=TCONS_00038167|Name=TCONS_00038167|organism=Clytia hemisphaerica|type=transcript|length=529bp
ATTACTCCACACGTCAGACTTGTCCAGAACAAACATTTCATCCCTGTCAT
CATCACTATCTTCTACCAGTTCTTGCTTGTGTTCgaccttttgaaatttt
tcttcattgGGTAGTTTTTCGTCCTTCTGTAATTTGTCATCCTTTGGTGA
TCCATCGGTCTTCTGTAAATCCTTCTGTTCAAGTGGCTTTTTGTTTGTTC
TTAATTGTTTGTCTTTCAAGGATTTATCGTCTTTCAGGGATTCTTCGTCT
TTTGGTAATTCTTCTTTCGGCGACTCCTCGTCAtgttgtaatttttcttc
tttcaaggATCCTTCGTTTTTCGGTGATTCCTGGCTATGttgcaattttt
tgtcttttcgaGACTCTCCGCGTTTTGGTGATTCCTTGGCATTTAGTAAT
TTTTCGTCTCTTTGTGAGTTTCCttcttttgataattctttCTTCTGTGA
TTTATCATCATTATGTAATTTTTCGCTTTGCAATGACTCTTGGTCCTTCT
GTAATTCCTCACTCTTCAgtacatcttcc Run BLAST on NCBI transcript from alignment at sc0001788:35242..38482- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038167 ID=TCONS_00038167|Name=TCONS_00038167|organism=Clytia hemisphaerica|type=transcript|length=3241bp|location=Sequence derived from alignment at sc0001788:35242..38482- (Clytia hemisphaerica)
ATTACTCCACACGTCAGACTTGTCCAGAACAAACATTTCATCACTGTCAG
CATCACTATTTTCTATCAGTTCTTGCTTGTGTTCGACCTTTCGAAATTCT
TCTTCATTGGGTAATTTTTCATCCTTCTGTAATTTGTCGTCCTTTGGTGA
TCCATCGGTCTTCTGTAAATCTTTCTGTTCGAGTGGCTTTTCGTTCTTTC
GTAATTGTTTGTCTTTCAAGGATTTATCGTCTTTCAGAGATTCTTCGTCT
TTTGGTAATTCTTCTTTAGGTGGTTCATCGTCTTTATGCACTGGAAAATC
GTTATGAAACGAGATTGTTCATAACGGCTATCTTTTAGTACAGAGTACAA
AAAAACACTCCTAAAACCTTAATTTTAGTAATTTAGATGTGTGATTACTG
ATTAGTATATATAATCACATGATAACAAGTGAATCCATCTTGCGATTAGG
AGTGCTATGCTCAACTTTGAGTTGTAAAACTAATTTTATGGCTTGCAATA
AATCGCACTCCTAAGACATTTCAGGTGTGTGGAGGTGTGCGCATACTATC
GCACGCCTCAAATGATACAGCCAGCTAGTCATAGGAATGTTGGTAAAAAA
CGTTTCTTAATTACGCTAAAGATACTACTGACTCCCAACTACCATTAAAG
AATTTCAAAAATTTGTAACTTTTTAACTCTAATATCGCTTTTTTAAACAG
AGCTTTGATACTTACTATTACTCCACACGTCAGACTTGTCCAGTACAAAC
ATTTCATCCCTGTCATCATCACTATCTTCTACCAGTTCTTGCTTGTGTTC
GACCTTTTGAAATTTTTCTTCATTGGGTAGTTTTTCGTCCTTCTGTAATT
TCTCTAATCTTGTTTTTATTTTTTGGGAGCTTTCAAATGGTTTATAACAG
GTCACTTTCTCTTTGAAGCTAAAATTTTCATTAAATTTCTCCGAAAAACA
CCAAAGTGACCAAAAAAAAAAGGTTTGGTTAAAAAAAAAACACAAGAAGA
GGTTGGAAAATCAACTAACAAAGATATCTCAACAACATAATTTATTATAT
AGCTGTTAGAAGTTTTAGAGAGGAGGTTTCTTTTAAAATCCTCCTTTGTA
AAACAGGGGATGCTGGATAAGTCTGAGAGGAGCTATAATGTGTGTGAAAC
CTGGTGAAACGGCAAAAATCGGTATTTATAACGNTTAGAAGTTTTAGAGA
GGAGGTTTCTTTTAAAATCCTCCTTTGTGAAACAGGGGATGCTGGATAAG
TCTGAGAGGAGCTATAATGTGTGTGAAACCTGGTGAAACGGCAAAAATCG
GTATTTATAACAGTTATTTGTCTCTGGAAAAACAGAGTACTAAAAATGTC
TAGTCATAGGAATGTTGGTAAAAGACGTTTCTTAATTAGGCTAAAGGAAC
TACTGACCCCTGACTACCTAGAGAAAGAATTTCAAAAATTTGTAACTTTT
TAACTCTAATATCGCTAATTTAAACAGAGTTTTGATACTTACTATTACTC
CACACATCAGCCTTGTCCAGTACAAATAATTCATCACTGTCAGCATCACT
ATTTTCTGTCAGTTCTTGCTTGTGTTTGACATTGCGAAAATTTTCTTCAT
TGGGTAGTTTTTCGTTGTTCTGGAATTTGTTGTCCTTTGGTGATCCATCG
GTCTTCTGTAAATCTTTCTGTTCGAGTGGCTTTTCGTTCTTTCTTAATTG
TTTGTCTTCCGAGGATTTATCGTCTTTCAGAGATTCTTTGTCTTTTGGTA
ATTCTTTTTTCGGTGATTCATCGTCTTTATGTACTGGAAAATCATTATAA
AACAAGATTGTTTATTACGGCCAACTATTAGTACAAAGTACAAAAAATGT
CTAGCCAAAGGAATGTTGGTAAAAGACGTTTCTTAATTAGGCTAAAGGAA
CTTCTGACTCCCGACTATCATTAGGGAAAGAATTTCAAAATTTTGTAACT
TTTTAACTCTAATATCGCTATTTTAAACAGAGCTTCAATACTTACTATTA
CTCCACACGTCAGACTTGTCCAGAACAAACATTTCATCACTGTCAGCATC
ACTATTTTCTATCAGTTCTTGCTTGTGTTCGACCTTTCGAAATTCTTCTT
CATTGGGTAATTTTTCATCCTTCTGTAATTTGTCGTCCTTTGGTGATCCA
TCGGTCTTCTGTAAATCTTTCTGTTCGAGTGGCTTTTCGTTCTTTCGTAA
TTGTTTGTCTTTCAAGGATTTATCGTCTTTCAGAGATTCTTCGTCTTTTG
GTAATTCTTCTTTAGGTGGTTCATCGTCTTTATGCACTGGAAAATCGTTA
TGAAACGAGATTGTTCATAACGGCTATCTTTTAGTACAGAGTACAAAAAA
ACACTCCTAAAACCTTAATTTTAGTAATTTAGATGTGTGATTACTGATTA
GTATATATAATCACATGATAACAAGTGAATCCATCTTGCGATTAGGAGTG
CTATGCTCAACTTTGAGTTGTAAAACTAATTTTATGGCTTGCAATAAATC
GCACTCCTAAGACATTTCAGGTGTGTGGAGGTGTGCGCATACTATCGCAC
GCCTCAAATGATACAGCCAGCTAGTCATAGGAATGTTGGTAAAAAACGTT
TCTTAATTACGCTAAAGATACTACTGACTCCCAACTACCATTAAAGAATT
TCAAAAATTTGTAACTTTTTAACTCTAATATCGCTTTTTTAAACAGAGCT
TTGATACTTACTATTACTCCACACGTCAGACTTGTCCAGTACAAACATTT
CATCCCTGTCATCATCACTATCTTCTACCAGTTCTTGCTTGTGTTCGACC
TTTTGAAATTTTTCTTCATTGGGTAGTTTTTCGTCCTTCTGTAATTTGTC
ATCCTTTGGTGATCCATCGGTCTTCTGTAAATCCTTCTGTTCAAGTGGCT
TTTTGTTTGTTCTTAATTGTTTGTCTTTCAAGGATTTATCGTCTTTCAGG
GATTCTTCGTCTTTTGGTAATTCTTCTTTCGGCGACTCCTCGTCATGTTG
TAATTTTTCTTCTTTCAAGGATCCTTCGTTTTTCGGTGATTCCTGGCTAT
GTTGCAATTTTTTGTCTTTTCGAGACTCTCCGCGTTTTGGTGATTCCTTG
GCATTTAGTAATTTTTCGTCTCTTTGTGAGTTTCCTTCTTTTGATAATTC
TTTCTTCTGTGATTTATCATCATTATGTAATTTTTCGCTTTGCAATGACT
CTTGGTCCTTCTGTAATTCCTCACTCTTCAGTACATCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038167-exon-sc0001788-1575043694:38449..38482 | TCONS_00038167-exon-sc0001788-1575043694:38449..38482 | Clytia hemisphaerica | exon |
| TCONS_00038167-exon-sc0001788-1575043694:35242..35736 | TCONS_00038167-exon-sc0001788-1575043694:35242..35736 | Clytia hemisphaerica | exon |
| TCONS_00038167-exon-sc0001788-1510915933:38449..38482 | TCONS_00038167-exon-sc0001788-1510915933:38449..38482 | Clytia hemisphaerica | exon |
| TCONS_00038167-exon-sc0001788-1510915933:35242..35736 | TCONS_00038167-exon-sc0001788-1510915933:35242..35736 | Clytia hemisphaerica | exon |
| TCONS_00038167-exon-sc0001788-1491911889:38449..38482 | TCONS_00038167-exon-sc0001788-1491911889:38449..38482 | Clytia hemisphaerica | exon |
| TCONS_00038167-exon-sc0001788-1491911889:35242..35736 | TCONS_00038167-exon-sc0001788-1491911889:35242..35736 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001788 | supercontig | sc0001788:35242..38482 - |
Blast
The following BLAST results are available for this feature:
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