|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038166 ID=TCONS_00038166|Name=TCONS_00038166|organism=Clytia hemisphaerica|type=transcript|length=529bp
ATTACTCCACACGTCAGACTTGTCCAGAACAAACATTTCATCCCTGTCAT
CATCACTATCTTCTACCAGTTCTTGCTTGTGTTCgaccttttgaaatttt
tcttcattgGGTAGTTTTTCGTCCTTCTGTAATTTGTCATCCTTTGGTGA
TCCATCGGTCTTCTGTAAATCCTTCTGTTCAAGTGGCTTTTTGTTTGTTC
TTAATTGTTTGTCTTTCAAGGATTTATCGTCTTTCAGGGATTCTTCGTCT
TTTGGTAATTCTTCTTTCGGCGACTCCTCGTCAtgttgtaatttttcttc
tttcaaggATCCTTCGTTTTTCGGTGATTCCTGGCTATGttgcaattttt
tgtcttttcgaGACTCTCCGCGTTTTGGTGATTCCTTGGCATTTAGTAAT
TTTTCGTCTCTTTGTGAGTTTCCttcttttgataattctttCTTCTGTGA
TTTATCATCATTATGTAATTTTTCGCTTTGCAATGACTCTTGGTCCTTCT
GTAATTCCTCACTCTTCAgtacatcttcc Run BLAST on NCBI transcript from alignment at sc0001788:35242..36486- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038166 ID=TCONS_00038166|Name=TCONS_00038166|organism=Clytia hemisphaerica|type=transcript|length=1245bp|location=Sequence derived from alignment at sc0001788:35242..36486- (Clytia hemisphaerica)
ATTACTCCACACGTCAGACTTGTCCAGAACAAACATTTCATCACTGTCAG
CATCACTATTTTCTATCAGTTCTTGCTTGTGTTCGACCTTTCGAAATTCT
TCTTCATTGGGTAATTTTTCATCCTTCTGTAATTTGTCGTCCTTTGGTGA
TCCATCGGTCTTCTGTAAATCTTTCTGTTCGAGTGGCTTTTCGTTCTTTC
GTAATTGTTTGTCTTTCAAGGATTTATCGTCTTTCAGAGATTCTTCGTCT
TTTGGTAATTCTTCTTTAGGTGGTTCATCGTCTTTATGCACTGGAAAATC
GTTATGAAACGAGATTGTTCATAACGGCTATCTTTTAGTACAGAGTACAA
AAAAACACTCCTAAAACCTTAATTTTAGTAATTTAGATGTGTGATTACTG
ATTAGTATATATAATCACATGATAACAAGTGAATCCATCTTGCGATTAGG
AGTGCTATGCTCAACTTTGAGTTGTAAAACTAATTTTATGGCTTGCAATA
AATCGCACTCCTAAGACATTTCAGGTGTGTGGAGGTGTGCGCATACTATC
GCACGCCTCAAATGATACAGCCAGCTAGTCATAGGAATGTTGGTAAAAAA
CGTTTCTTAATTACGCTAAAGATACTACTGACTCCCAACTACCATTAAAG
AATTTCAAAAATTTGTAACTTTTTAACTCTAATATCGCTTTTTTAAACAG
AGCTTTGATACTTACTATTACTCCACACGTCAGACTTGTCCAGTACAAAC
ATTTCATCCCTGTCATCATCACTATCTTCTACCAGTTCTTGCTTGTGTTC
GACCTTTTGAAATTTTTCTTCATTGGGTAGTTTTTCGTCCTTCTGTAATT
TGTCATCCTTTGGTGATCCATCGGTCTTCTGTAAATCCTTCTGTTCAAGT
GGCTTTTTGTTTGTTCTTAATTGTTTGTCTTTCAAGGATTTATCGTCTTT
CAGGGATTCTTCGTCTTTTGGTAATTCTTCTTTCGGCGACTCCTCGTCAT
GTTGTAATTTTTCTTCTTTCAAGGATCCTTCGTTTTTCGGTGATTCCTGG
CTATGTTGCAATTTTTTGTCTTTTCGAGACTCTCCGCGTTTTGGTGATTC
CTTGGCATTTAGTAATTTTTCGTCTCTTTGTGAGTTTCCTTCTTTTGATA
ATTCTTTCTTCTGTGATTTATCATCATTATGTAATTTTTCGCTTTGCAAT
GACTCTTGGTCCTTCTGTAATTCCTCACTCTTCAGTACATCTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038166-exon-sc0001788-1575043694:36453..36486 | TCONS_00038166-exon-sc0001788-1575043694:36453..36486 | Clytia hemisphaerica | exon |
| TCONS_00038166-exon-sc0001788-1575043694:35242..35736 | TCONS_00038166-exon-sc0001788-1575043694:35242..35736 | Clytia hemisphaerica | exon |
| TCONS_00038166-exon-sc0001788-1510915933:36453..36486 | TCONS_00038166-exon-sc0001788-1510915933:36453..36486 | Clytia hemisphaerica | exon |
| TCONS_00038166-exon-sc0001788-1510915933:35242..35736 | TCONS_00038166-exon-sc0001788-1510915933:35242..35736 | Clytia hemisphaerica | exon |
| TCONS_00038166-exon-sc0001788-1491911889:36453..36486 | TCONS_00038166-exon-sc0001788-1491911889:36453..36486 | Clytia hemisphaerica | exon |
| TCONS_00038166-exon-sc0001788-1491911889:35242..35736 | TCONS_00038166-exon-sc0001788-1491911889:35242..35736 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001788 | supercontig | sc0001788:35242..36486 - |
Blast
The following BLAST results are available for this feature:
|
