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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038156 ID=TCONS_00038156|Name=TCONS_00038156|organism=Clytia hemisphaerica|type=transcript|length=553bp
CATTAGAAGAGCTTGTTAATCTAAAGGAGAGTGAAAGATTCTTCCTTGTC
AAAATCAACGATAAAATTGGTTATGGAGTTTTTGCAAGGCAGAATTTCAA
AGCTCTTGATTTGCTTCTTGATTACAAAGgAGAGAAAATATCCACTCAAG
AAGCAAAAAGAAGATCCTTGTTCTACGATTACGAAAATAAGGGGTCATTT
ATTTTTGATGGTGTGAAGGATGGTTCGAACTTTGTCAGTATTGACGCAAC
ATATTATCATAAATCCTTCGGACGATATGTTAACGACTCGCCCAAACAAT
TTACCAATGCCAAGGCCAAACGGATGGTTATCGGGAAGgaagtcaaaata
attttagtggCAACAAAGGATATCGAAATTGGAACAGAAATTAGATATGA
TTATCTAGAAGGGCAACGTTCCATCAATTACGAAGTAATGCCTTGGCGAG
CGCCACAATATGAACCTTCAAGACCGTGTCACTTTGATGTTGAGAAAGAG
attgTTATTGTGAGTGACACTGGCAAGAAGAAGCAATTAACTCCATCCCA
GGT Run BLAST on NCBI protein sequence of TCONS_00038156-protein >TCONS_00038156-protein ID=TCONS_00038156-protein|Name=TCONS_00038156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
LEELVNLKESERFFLVKINDKIGYGVFARQNFKALDLLLDYKGEKISTQE
AKRRSLFYDYENKGSFIFDGVKDGSNFVSIDATYYHKSFGRYVNDSPKQF
TNAKAKRMVIGKEVKIILVATKDIEIGTEIRYDYLEGQRSINYEVMPWRA
PQYEPSRPCHFDVEKEIVIVSDTGKKKQLTPSQ Run BLAST on NCBI transcript from alignment at sc0001788:187..2725+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038156 ID=TCONS_00038156|Name=TCONS_00038156|organism=Clytia hemisphaerica|type=transcript|length=2539bp|location=Sequence derived from alignment at sc0001788:187..2725+ (Clytia hemisphaerica)
CATTAGAAGAGCTTGTTAATCTAAAGGAGAGTGAAAGATTCTTCCTTGTC
AAAATCAACGATAAAATTGGTACTATTTTATACTGATGATGTGTTATTTA
TTCACTGATAGTTTTTCATTCCTTTCTTCTGTTACAGATTGATCTATCTA
TGTTAAGTTTTTGTTGCTTTTGAGTTAAACTTTTGATCTCATCAATGACC
TTGTAAAGTTGTAAAAATATGCCACCATTTAAATTGTCATGGCTGTTGTA
TATACAATCTAATTTTTTCATAGGTTATGGAGTTTTTGCAAGGCAGAATT
TCAAAGCTCTTGATTTGCTTCTTGATTACAAAGGTAACCTATAGCTGATA
GTTTTGAGCCTTTCGATATAAGGCaagttcttttttttctgtGTTTACAG
ATTTTGAAGAGGAAACTTTGCACCAGAGgacagaaaataaaataaaagcg
ACATTTCTGAATCTTTAAActtctattttcaaaataatatgcCAGCTGAA
GCAAAAAATATGaatatctttaaaattatattttacgGTCAGAAAAATCT
GTTTAACTCTAGGAAAATACCATTTATTTATAGAGAAATCGTAAAAATAT
CcttattttttgcaaaacaGAGTATAATAAACTGTATTAATTACACACAT
TTCGcattcaaaaaatgtcaaaagattTTTTGCGTTTATACTTCAAgcaa
gattttttgtttttggaaaatttgacttGCCTTGACTGAAAAAGAATTGC
CTAATTAATgtttaaaatatgaaaaatatactCCATGTCTTCTTCTTTTA
CACATATACTACAAAATACAGAAAACTATTCACACAATTTCAGTGTGAAT
TTTAGCGTTTACAAATTCGAGGAAAATTCATTGTCCAAGTATGATTCAAG
GATTGGTCCAGCACAACTTCATAAAGCCCTTCATTGAGagcattattatt
atcattattttttcaggAGAGAAAATATCCACTCAAGAAGCAAAAAGAAG
ATCCTTGTTCTACGATTACGAAAATAAGGGGTCATTTATTTTTGATGGTG
TGAAGGATGGTTCGAACTTTGTCAGGTCAGGATTTGCTctgatttctttt
atttttatcaaagttGGTGTCCTGTCCCTTAGACATTTTTTAGGCTTTGT
AATGCAGTACTTAGTTACGTTAAAAGCAGCTATAATATAAAAACTATTAT
TAATCATAACTGGAGTAAAATTACTTAAATCTGGAATCTAGTTAATTTAG
AGTGTTTTTAGTGTTTGATGTAAAATTTCATTTGTACTCTAAATCTTATG
TGAACTTATTGTAAAGAAAGACAAAAATGAGAAAGGTTTAAACATAAACT
CATCAAGTAAGAAGAATCAATTTCTTGTTACATACTTGCTTTTCATAGTA
TTGACGCAACATATTATCATAAATCCTTCGGACGATATGTTAACGACTCG
CCCAAACAATTTACCAATGCCAAGGCCAAACGGATGGTTATCGGGAAGga
agtcaaaataattttagtggCAACAAAGGATATCGAAATTGGAACAGAAA
TTAGGTTAGACAAGTGATCACTTTATTTTGAATCGAAGCCTTAATAATAA
GGAGAAAGAGGCCTACTAAGGTCTGTACCTATTGAACTAAAGATAGCTAT
GAAAAATCTGATTACATATTTTTACTGTAGCACTTTTCTTTCAAGAACAA
TGATGAAAATGTGCTACCAGAAATTTCAGATTGGACTTTAGAACACCTTT
TTTTTAGATATGATTATCTAGAAGGGCAACGTTCCATCAATTACGAAGTA
ATGCCTTGGCGAGCGCCAGTATGTATTCATTTAATATATACAGTCTACat
cattaaaatattaaaaatacaatGGAATTAACCACTGTTTTTCGGTAACA
CACGGAAGAGTAAGtcacttaaaaacaaaaaagattgcACCACTTTTTTG
CTTTACGTACTATAAGAGGTAAAACTAACCTTTATCGTactaaattagag
gaaaatcagAAATTAATGAATATGGACTCGAACTAATAATTACAGGCATT
TGCTCAACATAATTCATTCGTACTAATTAGAGAACAgattaaattagaag
aatgGCGGTACcattatctttttaaattttggcacaaaatcattttttca
gtattttttatCCTTTCCTTTCCAGCAATATGAACCTTCAAGACCGTGTC
ACTTTGATGTTGAGAAAGAGGTTagtattttcaaggaaaataaaTAGTCT
AATAATCTATGGTTTACGGTTAGCTCATTTTAGAATTTTACTATTGAGCC
TACGAATGATTCAAACAATACTGTGAAGTTGTGGCAGTCCAGTTAGCAAG
TTCGACAGCtcaacaaaggaaatttttaaaagaaataactGGAGACTTGC
TTAGTTTGAAAGGCCTAAAAAGGTAGCTGTTCCACATCCTAAGAGACTTT
CAAAGTTTACACGAAGAGcttcttttttgcttaaagattgTTATTGTGAG
TGACACTGGCAAGAAGAAGCAATTAACTCCATCCCAGGT Coding sequence (CDS) from alignment at sc0001788:187..2725+ >TCONS_00038156 ID=TCONS_00038156|Name=TCONS_00038156|organism=Clytia hemisphaerica|type=CDS|length=3843bp|location=Sequence derived from alignment at sc0001788:187..2725+ (Clytia hemisphaerica)
TTAGAAGAGCTTGTTAATCTAAAGGAGAGTGAAAGATTCTTCCTTGTCAA
AATCAACGATAAAATTGGTTATGGAGTTTTTGCAAGGCAGAATTTCAAAG
CTCTTGATTTGCTTCTTGATTACAAAGgAGAGAAAATATCCACTCAAGAA
GCAAAAAGAAGATCCTTGTTCTACGATTACGAAAATAAGGGGTCATTTAT
TTTTGATGGTGTGAAGGATGGTTCGAACTTTGTCAGTATTGACGCAACAT
ATTATCATAAATCCTTCGGACGATATGTTAACGACTCGCCCAAACAATTT
ACCAATGCCAAGGCCAAACGGATGGTTATCGGGAAGgaagtcaaaataat
tttagtggCAACAAAGGATATCGAAATTGGAACAGAAATTAGATATGATT
ATCTAGAAGGGCAACGTTCCATCAATTACGAAGTAATGCCTTGGCGAGCG
CCACAATATGAACCTTCAAGACCGTGTCACTTTGATGTTGAGAAAGAGat
tgTTATTGTGAGTGACACTGGCAAGAAGAAGCAATTAACTCCATCCCAGT
TAGAAGAGCTTGTTAATCTAAAGGAGAGTGAAAGATTCTTCCTTGTCAAA
ATCAACGATAAAATTGGTTATGGAGTTTTTGCAAGGCAGAATTTCAAAGC
TCTTGATTTGCTTCTTGATTACAAAGgAGAGAAAATATCCACTCAAGAAG
CAAAAAGAAGATCCTTGTTCTACGATTACGAAAATAAGGGGTCATTTATT
TTTGATGGTGTGAAGGATGGTTCGAACTTTGTCAGTATTGACGCAACATA
TTATCATAAATCCTTCGGACGATATGTTAACGACTCGCCCAAACAATTTA
CCAATGCCAAGGCCAAACGGATGGTTATCGGGAAGgaagtcaaaataatt
ttagtggCAACAAAGGATATCGAAATTGGAACAGAAATTAGATATGATTA
TCTAGAAGGGCAACGTTCCATCAATTACGAAGTAATGCCTTGGCGAGCGC
CACAATATGAACCTTCAAGACCGTGTCACTTTGATGTTGAGAAAGAGatt
gTTATTGTGAGTGACACTGGCAAGAAGAAGCAATTAACTCCATCCCAGTT
AGAAGAGCTTGTTAATCTAAAGGAGAGTGAAAGATTCTTCCTTGTCAAAA
TCAACGATAAAATTGGTTATGGAGTTTTTGCAAGGCAGAATTTCAAAGCT
CTTGATTTGCTTCTTGATTACAAAGgAGAGAAAATATCCACTCAAGAAGC
AAAAAGAAGATCCTTGTTCTACGATTACGAAAATAAGGGGTCATTTATTT
TTGATGGTGTGAAGGATGGTTCGAACTTTGTCAGTATTGACGCAACATAT
TATCATAAATCCTTCGGACGATATGTTAACGACTCGCCCAAACAATTTAC
CAATGCCAAGGCCAAACGGATGGTTATCGGGAAGgaagtcaaaataattt
tagtggCAACAAAGGATATCGAAATTGGAACAGAAATTAGATATGATTAT
CTAGAAGGGCAACGTTCCATCAATTACGAAGTAATGCCTTGGCGAGCGCC
ACAATATGAACCTTCAAGACCGTGTCACTTTGATGTTGAGAAAGAGattg
TTATTGTGAGTGACACTGGCAAGAAGAAGCAATTAACTCCATCCCAGTTA
GAAGAGCTTGTTAATCTAAAGGAGAGTGAAAGATTCTTCCTTGTCAAAAT
CAACGATAAAATTGGTTATGGAGTTTTTGCAAGGCAGAATTTCAAAGCTC
TTGATTTGCTTCTTGATTACAAAGgAGAGAAAATATCCACTCAAGAAGCA
AAAAGAAGATCCTTGTTCTACGATTACGAAAATAAGGGGTCATTTATTTT
TGATGGTGTGAAGGATGGTTCGAACTTTGTCAGTATTGACGCAACATATT
ATCATAAATCCTTCGGACGATATGTTAACGACTCGCCCAAACAATTTACC
AATGCCAAGGCCAAACGGATGGTTATCGGGAAGgaagtcaaaataatttt
agtggCAACAAAGGATATCGAAATTGGAACAGAAATTAGATATGATTATC
TAGAAGGGCAACGTTCCATCAATTACGAAGTAATGCCTTGGCGAGCGCCA
CAATATGAACCTTCAAGACCGTGTCACTTTGATGTTGAGAAAGAGattgT
TATTGTGAGTGACACTGGCAAGAAGAAGCAATTAACTCCATCCCAGTTAG
AAGAGCTTGTTAATCTAAAGGAGAGTGAAAGATTCTTCCTTGTCAAAATC
AACGATAAAATTGGTTATGGAGTTTTTGCAAGGCAGAATTTCAAAGCTCT
TGATTTGCTTCTTGATTACAAAGgAGAGAAAATATCCACTCAAGAAGCAA
AAAGAAGATCCTTGTTCTACGATTACGAAAATAAGGGGTCATTTATTTTT
GATGGTGTGAAGGATGGTTCGAACTTTGTCAGTATTGACGCAACATATTA
TCATAAATCCTTCGGACGATATGTTAACGACTCGCCCAAACAATTTACCA
ATGCCAAGGCCAAACGGATGGTTATCGGGAAGgaagtcaaaataatttta
gtggCAACAAAGGATATCGAAATTGGAACAGAAATTAGATATGATTATCT
AGAAGGGCAACGTTCCATCAATTACGAAGTAATGCCTTGGCGAGCGCCAC
AATATGAACCTTCAAGACCGTGTCACTTTGATGTTGAGAAAGAGattgTT
ATTGTGAGTGACACTGGCAAGAAGAAGCAATTAACTCCATCCCAGTTAGA
AGAGCTTGTTAATCTAAAGGAGAGTGAAAGATTCTTCCTTGTCAAAATCA
ACGATAAAATTGGTTATGGAGTTTTTGCAAGGCAGAATTTCAAAGCTCTT
GATTTGCTTCTTGATTACAAAGgAGAGAAAATATCCACTCAAGAAGCAAA
AAGAAGATCCTTGTTCTACGATTACGAAAATAAGGGGTCATTTATTTTTG
ATGGTGTGAAGGATGGTTCGAACTTTGTCAGTATTGACGCAACATATTAT
CATAAATCCTTCGGACGATATGTTAACGACTCGCCCAAACAATTTACCAA
TGCCAAGGCCAAACGGATGGTTATCGGGAAGgaagtcaaaataattttag
tggCAACAAAGGATATCGAAATTGGAACAGAAATTAGATATGATTATCTA
GAAGGGCAACGTTCCATCAATTACGAAGTAATGCCTTGGCGAGCGCCACA
ATATGAACCTTCAAGACCGTGTCACTTTGATGTTGAGAAAGAGattgTTA
TTGTGAGTGACACTGGCAAGAAGAAGCAATTAACTCCATCCCAGTTAGAA
GAGCTTGTTAATCTAAAGGAGAGTGAAAGATTCTTCCTTGTCAAAATCAA
CGATAAAATTGGTTATGGAGTTTTTGCAAGGCAGAATTTCAAAGCTCTTG
ATTTGCTTCTTGATTACAAAGgAGAGAAAATATCCACTCAAGAAGCAAAA
AGAAGATCCTTGTTCTACGATTACGAAAATAAGGGGTCATTTATTTTTGA
TGGTGTGAAGGATGGTTCGAACTTTGTCAGTATTGACGCAACATATTATC
ATAAATCCTTCGGACGATATGTTAACGACTCGCCCAAACAATTTACCAAT
GCCAAGGCCAAACGGATGGTTATCGGGAAGgaagtcaaaataattttagt
ggCAACAAAGGATATCGAAATTGGAACAGAAATTAGATATGATTATCTAG
AAGGGCAACGTTCCATCAATTACGAAGTAATGCCTTGGCGAGCGCCACAA
TATGAACCTTCAAGACCGTGTCACTTTGATGTTGAGAAAGAGattgTTAT
TGTGAGTGACACTGGCAAGAAGAAGCAATTAACTCCATCCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038156-exon-sc0001788-1491911889:187..255 | TCONS_00038156-exon-sc0001788-1491911889:187..255 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1510915933:187..255 | TCONS_00038156-exon-sc0001788-1510915933:187..255 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1575043694:187..255 | TCONS_00038156-exon-sc0001788-1575043694:187..255 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1491911889:460..519 | TCONS_00038156-exon-sc0001788-1491911889:460..519 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1510915933:460..519 | TCONS_00038156-exon-sc0001788-1510915933:460..519 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1575043694:460..519 | TCONS_00038156-exon-sc0001788-1575043694:460..519 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1491911889:1153..1261 | TCONS_00038156-exon-sc0001788-1491911889:1153..1261 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1510915933:1153..1261 | TCONS_00038156-exon-sc0001788-1510915933:1153..1261 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1575043694:1153..1261 | TCONS_00038156-exon-sc0001788-1575043694:1153..1261 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1491911889:1585..1740 | TCONS_00038156-exon-sc0001788-1491911889:1585..1740 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1510915933:1585..1740 | TCONS_00038156-exon-sc0001788-1510915933:1585..1740 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1575043694:1585..1740 | TCONS_00038156-exon-sc0001788-1575043694:1585..1740 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1491911889:1944..2004 | TCONS_00038156-exon-sc0001788-1491911889:1944..2004 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1510915933:1944..2004 | TCONS_00038156-exon-sc0001788-1510915933:1944..2004 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1575043694:1944..2004 | TCONS_00038156-exon-sc0001788-1575043694:1944..2004 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1491911889:2362..2406 | TCONS_00038156-exon-sc0001788-1491911889:2362..2406 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1510915933:2362..2406 | TCONS_00038156-exon-sc0001788-1510915933:2362..2406 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1575043694:2362..2406 | TCONS_00038156-exon-sc0001788-1575043694:2362..2406 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1491911889:2673..2725 | TCONS_00038156-exon-sc0001788-1491911889:2673..2725 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1510915933:2673..2725 | TCONS_00038156-exon-sc0001788-1510915933:2673..2725 | Clytia hemisphaerica | exon |
| TCONS_00038156-exon-sc0001788-1575043694:2673..2725 | TCONS_00038156-exon-sc0001788-1575043694:2673..2725 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001788 | supercontig | sc0001788:187..2725 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001214 | SET_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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