TCONS_00038155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038155
Unique NameTCONS_00038155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length489

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038155 ID=TCONS_00038155|Name=TCONS_00038155|organism=Clytia hemisphaerica|type=transcript|length=489bp
AGAACCCTTCACAGTAGCGTCTATCGTTTACGTTTATATCATAAATATAT
ATTTCTATTCAAATGAAACTTTGTCGTGAGAAAGATAGCTTACTAATTGT
AAGTCGAAGCTTGAAACTAGGTAGTAGAGTGACGCAGATCTAgatggatg
aaaaaagtagatgTATACTAATTTGCGAAGATCGTGTCTAAAAGTTGTAA
GGATAATCCACCAAAAATTCGAAGTTGGCTtgaagagaattaaaaaaatc
aaaatttgccgtagttattttaaaatctaaagataaatttctctaatttt
caaagcttttttaatatatttttctagcatttttaatTTGACCACATTTT
CGCTCGTTATGTCTTCTTTCGATACTGATGTTGATTCCTCTCCTACTTTG
TCCTTTAAGTCATTACATTCAAATAAATGTTCCGTGGTGTCGTCCTCTGT
CTTGCATATCGGGCATTTCATATCTCTGTACTTTCCTTT
Run BLAST on NCBI

transcript from alignment at sc0001786:36557..37045

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038155 ID=TCONS_00038155|Name=TCONS_00038155|organism=Clytia hemisphaerica|type=transcript|length=489bp|location=Sequence derived from alignment at sc0001786:36557..37045 (Clytia hemisphaerica)
AAAGGAAAGTACAGAGATATGAAATGCCCGATATGCAAGACAGAGGACGA
CACCACGGAACATTTATTTGAATGTAATGACTTAAAGGACAAAGTAGGAG
AGGAATCAACATCAGTATCGAAAGAAGACATAACGAGCGAAAATGTGGTC
AAattaaaaatgctagaaaaatatattaaaaaagctttgaaaattagaga
aatttatctttagattttaaaataactacggcaaattttgatttttttaa
ttctcttcaAGCCAACTTCGAATTTTTGGTGGATTATCCTTACAACTTTT
AGACACGATCTTCGCAAATTAGTATAcatctacttttttcatccatcTAG
ATCTGCGTCACTCTACTACCTAGTTTCAAGCTTCGACTTACAATTAGTAA
GCTATCTTTCTCACGACAAAGTTTCATTTGAATAGAAATATATATTTATG
ATATAAACGTAAACGATAGACGCTACTGTGAAGGGTTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022803XLOC_022803Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038155-exon-sc0001786-1491911889:36557..37045TCONS_00038155-exon-sc0001786-1491911889:36557..37045Clytia hemisphaericaexon
TCONS_00038155-exon-sc0001786-1510915933:36557..37045TCONS_00038155-exon-sc0001786-1510915933:36557..37045Clytia hemisphaericaexon
TCONS_00038155-exon-sc0001786-1575043694:36557..37045TCONS_00038155-exon-sc0001786-1575043694:36557..37045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001786supercontigsc0001786:36557..37045 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.126706	0	0.143463	0	0.512611	0.405072	0.814504	1.06754	1.1745	1.32255	0.385111	0.421928	1.34829	0.0875135	0.143896	0	0	0	0	0.140945	0.122507	0.179264	0	0.13208	0.816233	0.242823	0.173739	0	0	0.143284
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top