TCONS_00038150 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038150
Unique NameTCONS_00038150
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length226

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038150 ID=TCONS_00038150|Name=TCONS_00038150|organism=Clytia hemisphaerica|type=transcript|length=226bp
ATTCTTCACTAACTTTATCACTACAGACAAAAGCACTACGTCGATATTGA
CCAGTAAAGTACaaaccatttaaatttttcactcTGCTCATTGCAACATA
CATTTGGCCAGCATTGAACTTTCTTTGCCTTGCAAGGTCAAAACTAACGA
CTACTGAATCCAAAGTTAATCCTTGAACTTTGTGCACTGTACAAGCATAA
GCTAGCTTAAGAGGAAATTGTGTTCG
Run BLAST on NCBI

transcript from alignment at sc0001784:16945..17170

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038150 ID=TCONS_00038150|Name=TCONS_00038150|organism=Clytia hemisphaerica|type=transcript|length=226bp|location=Sequence derived from alignment at sc0001784:16945..17170 (Clytia hemisphaerica)
CGAACACAATTTCCTCTTAAGCTAGCTTATGCTTGTACAGTGCACAAAGT
TCAAGGATTAACTTTGGATTCAGTAGTCGTTAGTTTTGACCTTGCAAGGC
AAAGAAAGTTCAATGCTGGCCAAATGTATGTTGCAATGAGCAgagtgaaa
aatttaaatggtttGTACTTTACTGGTCAATATCGACGTAGTGCTTTTGT
CTGTAGTGATAAAGTTAGTGAAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022799XLOC_022799Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038150-exon-sc0001784-1491911889:16945..17170TCONS_00038150-exon-sc0001784-1491911889:16945..17170Clytia hemisphaericaexon
TCONS_00038150-exon-sc0001784-1510915933:16945..17170TCONS_00038150-exon-sc0001784-1510915933:16945..17170Clytia hemisphaericaexon
TCONS_00038150-exon-sc0001784-1575043694:16945..17170TCONS_00038150-exon-sc0001784-1575043694:16945..17170Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001784supercontigsc0001784:16945..17170 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	3.409	2.89417	0	8.85198	4.19364	5.78935	5.41992	3.58329	3.52518	1.14054	4.22298	0.990351	1.55508	3.00873	6.66619	6.91721	1.69702	5.44407	0	1.77879	3.00536	4.41216	0	3.62602	5.0782	0	0.512516	1.64517	7.25048
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038150 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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