TCONS_00038147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038147
Unique NameTCONS_00038147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038147 ID=TCONS_00038147|Name=TCONS_00038147|organism=Clytia hemisphaerica|type=transcript|length=1819bp
ATTggtagcaattttcaaaaaaaattaaattctaaaaacctttactttgc
tgacagtcagcatttttctaaaacaggtaaaatcgaaaaaacaccacgga
ggagtgcaaactccagcctcgttttcaaaatcgtccaagatagacttttt
aagacctgggtctccataatcagcataaaatttccgttccaacggtatat
aacaaccccattcttttttagggttaagcaaaaatgccatttttggatTC
TGCTCCCCGACTAACAGGTTTATCGGACGTTTTGTACGCGTTGGGACAAG
AGCGATTGGACAAACTGATGCCAGACGTCATCACCACTACAATGAAAGCA
GATCTTGCACCAAACATCAGGGATGGCTACCTCATGTTGTTCATCTACCT
CCCGGTTACTTTCGGTGAAGACTTCACTGGATATATTGGTCCTATCATCC
CTCCCATCTTGAAGGGATTAGCGGACGAATCAGAGTATGTCCGGGAGACA
GCTTTGAAAGCCGGACAACGCATCATCAACATGTATGCGGACACCGCCAT
CGAGTTCCTGTTACCACAATTGGAAGCCGGTCTTTTCAACGGGCATTGGC
GTATCCGGTATTCTTCCGTCCAACTACTTGGTGATTTGCTGTTCAAGTTG
TCAGGGGTTACTGGCAAACAAACGACAGTCGGTGAAGAGGATGACAACTT
CGGAACTGCTCATTCATCACAGGTCATCTTACACACTCTCGGTAAAGATC
ACCGTAACCGGATTTACGCCGGTCTCTACATGGGCCGTTCGGACATTGCT
TTGACTGTGCGACAAGCGGCGTTGCACGTCTGGAAGGTCATCGTTCAGAA
CACGGCACGTACGTTGCGCGATATACTTCCAACGTTGTTCGAACTTTTGC
TTGGATGTTTGGCAAGTGAAAGTTATGACAAGAGACAGGTCGCAGCTCGA
ACTCTTGGTGACCTTGTCCGTAAACTTGGAGAACGAATCTTGCCCGAAAT
TATCCCGATTTTGGAAAACGGACTCAGTAACCCAGACGGTGATAAACGTC
AAGGTGTTTGTATCGGGTTAAGTGAGATCATGAACTCGACCAGCCGTGAT
ATGATCGCACAATTTGAAGACTCGCTTATCAATACTGTCCGCGCGGCCTT
GGTGGATCCTCTGGCGGACGTACGATTAGCTGCTTCAGAGACATTTGAGA
ATCTACACAATGCGATTGGACATCGTGCGTTGGACGGTGTACTACCTGTG
GTCTTCCCAAAATTGGACGATCCCGAACTTTCCGAATATGCATTGGATGG
ATTGAAACAAGTGATGGCCGTCAAATCGAAATCCGTTCTTCCCTTCTTGG
TACCCAAACTGACCGCACCACCGGTTAATACGAAGGCGCTGGCTATTTTA
TCCTCAGTGGCGGGTGAAGCACTCATCAAACATTTGGAACGCATTTTACC
AGCCATGATCCAAGCCGTCAATGACGCGGAGGAAGGCAGTGAATCCGTGA
GTCTCTAAAGTTTCttactttttatttgttttgatacacgctttttataa
gaacaattttatagtAACACGACGCTGATAATTGGCCAACACCgaattga
agaaaatttaatACTCAGATTTTAGAAATCACTATCAAAGTAACTGACTT
TGACGTGTATTTGTTGTCTCAAACGCAATCTTTTGAGATTATGTATGGGT
ATGGGTCCTCAAAGGCCTTACTTGGGATCATTTTAATGGGTGTGTAGAGA
ATCTTTTTCAATTGTTAGTCACGATGCTCTCTCTATATAAATGAATTATT
CAAAGTAGCAGTTGTaaca
Run BLAST on NCBI

protein sequence of TCONS_00038147-protein

>TCONS_00038147-protein ID=TCONS_00038147-protein|Name=TCONS_00038147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=424bp
MPFLDSAPRLTGLSDVLYALGQERLDKLMPDVITTTMKADLAPNIRDGYL
MLFIYLPVTFGEDFTGYIGPIIPPILKGLADESEYVRETALKAGQRIINM
YADTAIEFLLPQLEAGLFNGHWRIRYSSVQLLGDLLFKLSGVTGKQTTVG
EEDDNFGTAHSSQVILHTLGKDHRNRIYAGLYMGRSDIALTVRQAALHVW
KVIVQNTARTLRDILPTLFELLLGCLASESYDKRQVAARTLGDLVRKLGE
RILPEIIPILENGLSNPDGDKRQGVCIGLSEIMNSTSRDMIAQFEDSLIN
TVRAALVDPLADVRLAASETFENLHNAIGHRALDGVLPVVFPKLDDPELS
EYALDGLKQVMAVKSKSVLPFLVPKLTAPPVNTKALAILSSVAGEALIKH
LERILPAMIQAVNDAEEGSESVSL
Run BLAST on NCBI

transcript from alignment at sc0001784:20538..23773-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038147 ID=TCONS_00038147|Name=TCONS_00038147|organism=Clytia hemisphaerica|type=transcript|length=3236bp|location=Sequence derived from alignment at sc0001784:20538..23773- (Clytia hemisphaerica)
ATTGGTAGCAATTTTCAAAAAAAATTAAATTCTAAAAACCTTTACTTTGC
TGACAGTCAGCATTTTTCTAAAACAGGTAAAATCGAAAAAACACCACGGA
GGAGTGCAAACTCCAGCCTCGTTTTCAAAATCGTCCAAGATAGACTTTTT
AAGACCTGGGTCTCCATAATCAGCATAAAATTTCCGTTCCAACGGTATAT
AACAACCCCATTCTTTTTTAGGGTTAAGCAAAAATGCCATTTTTGGATTC
TGCTCCCCGACTAACAGGTTTATCGGACGTTTTGTACGCGTTGGGACAAG
AGCGATTGGACAAACTGATGCCAGACGTCATCACCACTACAATGAAAGCA
GATCTTGCACCAAACATCAGGGATGGCTACCTCATGTTGTTCATCTACCT
CCCGGTTACTTTCGGTGAAGACTTCACTGGATATATTGGTCCTATCATCC
CTCCCATCTTGAAGGTATGTAGTTTATATAGAGATTTCTCCGATACCCAA
GCAGGTTTTCTTTGTAGTAAGTAAACCTGTGATCGCAGTAAAAGGCGACC
CTAAGGCTCGTCATCTGATAGCTATCTACCTGAAGATGAGGGAGCGTACC
ACTTATCCAGCTTGCTTACCCTAGCTGAACGCTCCACATTTGCACTACAT
CGCTGTATCTCTGCTGAGTGCAAATACTCGGGACGGTGATGAATTAAAAT
TAAACACAAACAGAAACTTGTGTACTTTTTAATCCCAACCTTATAGGTCA
GTGGGTTTGAACAAAAATCTTGCCTTCCTTTTTCGGAAGAAGTTCATTGG
AATATTATTATATAGTTTTCGGTGAAGATTGCCATCCTGTATGGCATGAA
ACTTTTTAGTATGAAGTTTTCTCAAGTCGTTTTCATTTACTCCAACTAGT
AAGATGTTATTATTTGATCTTCTCTGATGTCTAAAAAGTTAATGTTATCA
CATTTCCTATTCAGGGATTAGCGGACGAATCAGAGTATGTCCGGGAGACA
GCTTTGAAAGCCGGACAACGCATCATCAACATGTATGCGGACACCGCCAT
CGAGTTCCTGTTACCACAATTGGAAGCCGGTCTTTTCAACGGGCATTGGC
GTATCCGGTATTCTTCCGTCCAACTACTTGGTGATTTGCTGTTCAAGTTG
TCAGGGGTTACTGGCAAACAAACGACAGTCGGTGAAGAGGATGACAACTT
CGGAACTGCTCATTCATCACAGGTATGTAATACGAAATATCTTTGGGAAA
CTCAGTTTCTACTTTAACAAGTGTTTACGGATTTGTTGGCATTTACTTTC
GGATTTTTGTTTTATTGTTCCTGCAGAAATAAAATAAAGGAAAATTATTG
CCGATGGGGATGGAGAATTGTCGGCATCGTCTATTCTATATGGATGGATG
GGAATTTCAAAATGTTTACAGCATAAAAATATTTTCGAGTCGGGAGGTTT
GATGGTGATGATTAACCTTTCCAAGTTTGCACTGTTGCTATGATAATACC
GGTTGAGAATAACTAATATAGCTTTCGATATCGATTTGGTTGGATATCAA
CTTCTTAAAATTGAAATGTTTAACTTTGGATTTAAAAAAAGATTAAAAAA
GCCACATTGCATTAGATATCACGAAAAACGAGATTAATTTTTTAAACAAA
CCGATGTCCCAAATTTGAATTAACTCTTAATCGTTTTCATAGGTCATCTT
ACACACTCTCGGTAAAGATCACCGTAACCGGATTTACGCCGGTCTCTACA
TGGGCCGTTCGGACATTGCTTTGACTGTGCGACAAGCGGCGTTGCACGTC
TGGAAGGTCATCGTTCAGAACACGGCACGTACGTTGCGCGATATACTTCC
AACGTTGTTCGAACTTTTGCTTGGATGTTTGGCAAGTGAAAGTTATGACA
AGAGACAGGTAAAGGCTTCGTCACTTTTAAGTTATTTCATCTAATCCTTG
CCTGATATTGAAAAGTTTTCTTTTGCAAGTCGCGAAGATCTTTAGTGGTT
TTATTTAATGCTAACACTGCATTCTTTCTAGGTCGCAGCTCGAACTCTTG
GTGACCTTGTCCGTAAACTTGGAGAACGAATCTTGCCCGAAATTATCCCG
ATTTTGGAAAACGGACTCAGTAACCCAGACGGTGATAAACGTCAAGGTGT
TTGTATCGGGTTAAGTGAGATCATGAACTCGACCAGCCGTGATATGATCG
CACAATTTGAAGACTCGCTTATCAATACTGTCCGCGCGGCCTTGGTGGAT
CCTCTGGCGGACGTACGATTAGCTGCTTCAGAGACATTTGAGAATCTACA
CAATGCGATTGGACATCGTGCGTTGGACGGTGTACTACCTGTGGTCTTCC
CAAAATTGGTATGTACAATTTCATTGAAAAACGACTAGGCTTATTTTCAC
TAAAAACAAGCTTTCACATTTTGTTATAATTTATAACAAAAAAATAGAAC
GACTTAGTATCTTTGCCGGTTCTACCGGTTAGTTAAAATCGTGCGCCCTA
AGAATAAATCATAATAACGTAACATTTTAAGTATACCGGAAACTTTAACT
TTGAGCTGTAATCTAATATTATTGAATATAGTTTCTCCAAATACTGAATA
AGGCACAAAAGACATCACGAATCTGTACAAGAGTATTGCATTACATCATA
ATTTCCTCCTTCCCCTTTTTGCATTGTAAAAGGACGATCCCGAACTTTCC
GAATATGCATTGGATGGATTGAAACAAGTGATGGCCGTCAAATCGAAATC
CGTTCTTCCCTTCTTGGTACCCAAACTGACCGCACCACCGGTTAATACGA
AGGCGCTGGCTATTTTATCCTCAGTGGCGGGTGAAGCACTCATCAAACAT
TTGGAACGCATTTTACCAGCCATGATCCAAGCCGTCAATGACGCGGAGGA
AGGCAGTGAATCCGTGAGTCTCTAAAGTTTCTTACTTTTTATTTGTTTTG
ATACACGCTTTTTATAAGAACAATTTTATAGTAACACGACGCTGATAATT
GGCCAACACCGAATTGAAGAAAATTTAATACTCAGATTTTAGAAATCACT
ATCAAAGTAACTGACTTTGACGTGTATTTGTTGTCTCAAACGCAATCTTT
TGAGATTATGTATGGGTATGGGTCCTCAAAGGCCTTACTTGGGATCATTT
TAATGGGTGTGTAGAGAATCTTTTTCAATTGTTAGTCACGATGCTCTCTC
TATATAAATGAATTATTCAAAGTAGCAGTTGTAACA

Coding sequence (CDS) from alignment at sc0001784:20538..23773-

>TCONS_00038147 ID=TCONS_00038147|Name=TCONS_00038147|organism=Clytia hemisphaerica|type=CDS|length=6375bp|location=Sequence derived from alignment at sc0001784:20538..23773- (Clytia hemisphaerica)
GACGATCCCGAACTTTCCGAATATGCATTGGATGGATTGAAACAAGTGAT
GGCCGTCAAATCGAAATCCGTTCTTCCCTTCTTGGTACCCAAACTGACCG
CACCACCGGTTAATACGAAGGCGCTGGCTATTTTATCCTCAGTGGCGGGT
GAAGCACTCATCAAACATTTGGAACGCATTTTACCAGCCATGATCCAAGC
CGTCAATGACGCGGAGGAAGGCAGTGAATCCGTGAGTCTCTAAGTCGCAG
CTCGAACTCTTGGTGACCTTGTCCGTAAACTTGGAGAACGAATCTTGCCC
GAAATTATCCCGATTTTGGAAAACGGACTCAGTAACCCAGACGGTGATAA
ACGTCAAGGTGTTTGTATCGGGTTAAGTGAGATCATGAACTCGACCAGCC
GTGATATGATCGCACAATTTGAAGACTCGCTTATCAATACTGTCCGCGCG
GCCTTGGTGGATCCTCTGGCGGACGTACGATTAGCTGCTTCAGAGACATT
TGAGAATCTACACAATGCGATTGGACATCGTGCGTTGGACGGTGTACTAC
CTGTGGTCTTCCCAAAATTGGTCATCTTACACACTCTCGGTAAAGATCAC
CGTAACCGGATTTACGCCGGTCTCTACATGGGCCGTTCGGACATTGCTTT
GACTGTGCGACAAGCGGCGTTGCACGTCTGGAAGGTCATCGTTCAGAACA
CGGCACGTACGTTGCGCGATATACTTCCAACGTTGTTCGAACTTTTGCTT
GGATGTTTGGCAAGTGAAAGTTATGACAAGAGACAGGGATTAGCGGACGA
ATCAGAGTATGTCCGGGAGACAGCTTTGAAAGCCGGACAACGCATCATCA
ACATGTATGCGGACACCGCCATCGAGTTCCTGTTACCACAATTGGAAGCC
GGTCTTTTCAACGGGCATTGGCGTATCCGGTATTCTTCCGTCCAACTACT
TGGTGATTTGCTGTTCAAGTTGTCAGGGGTTACTGGCAAACAAACGACAG
TCGGTGAAGAGGATGACAACTTCGGAACTGCTCATTCATCACAGATGCCA
TTTTTGGATTCTGCTCCCCGACTAACAGGTTTATCGGACGTTTTGTACGC
GTTGGGACAAGAGCGATTGGACAAACTGATGCCAGACGTCATCACCACTA
CAATGAAAGCAGATCTTGCACCAAACATCAGGGATGGCTACCTCATGTTG
TTCATCTACCTCCCGGTTACTTTCGGTGAAGACTTCACTGGATATATTGG
TCCTATCATCCCTCCCATCTTGAAGGACGATCCCGAACTTTCCGAATATG
CATTGGATGGATTGAAACAAGTGATGGCCGTCAAATCGAAATCCGTTCTT
CCCTTCTTGGTACCCAAACTGACCGCACCACCGGTTAATACGAAGGCGCT
GGCTATTTTATCCTCAGTGGCGGGTGAAGCACTCATCAAACATTTGGAAC
GCATTTTACCAGCCATGATCCAAGCCGTCAATGACGCGGAGGAAGGCAGT
GAATCCGTGAGTCTCTAAGTCGCAGCTCGAACTCTTGGTGACCTTGTCCG
TAAACTTGGAGAACGAATCTTGCCCGAAATTATCCCGATTTTGGAAAACG
GACTCAGTAACCCAGACGGTGATAAACGTCAAGGTGTTTGTATCGGGTTA
AGTGAGATCATGAACTCGACCAGCCGTGATATGATCGCACAATTTGAAGA
CTCGCTTATCAATACTGTCCGCGCGGCCTTGGTGGATCCTCTGGCGGACG
TACGATTAGCTGCTTCAGAGACATTTGAGAATCTACACAATGCGATTGGA
CATCGTGCGTTGGACGGTGTACTACCTGTGGTCTTCCCAAAATTGGTCAT
CTTACACACTCTCGGTAAAGATCACCGTAACCGGATTTACGCCGGTCTCT
ACATGGGCCGTTCGGACATTGCTTTGACTGTGCGACAAGCGGCGTTGCAC
GTCTGGAAGGTCATCGTTCAGAACACGGCACGTACGTTGCGCGATATACT
TCCAACGTTGTTCGAACTTTTGCTTGGATGTTTGGCAAGTGAAAGTTATG
ACAAGAGACAGGGATTAGCGGACGAATCAGAGTATGTCCGGGAGACAGCT
TTGAAAGCCGGACAACGCATCATCAACATGTATGCGGACACCGCCATCGA
GTTCCTGTTACCACAATTGGAAGCCGGTCTTTTCAACGGGCATTGGCGTA
TCCGGTATTCTTCCGTCCAACTACTTGGTGATTTGCTGTTCAAGTTGTCA
GGGGTTACTGGCAAACAAACGACAGTCGGTGAAGAGGATGACAACTTCGG
AACTGCTCATTCATCACAGATGCCATTTTTGGATTCTGCTCCCCGACTAA
CAGGTTTATCGGACGTTTTGTACGCGTTGGGACAAGAGCGATTGGACAAA
CTGATGCCAGACGTCATCACCACTACAATGAAAGCAGATCTTGCACCAAA
CATCAGGGATGGCTACCTCATGTTGTTCATCTACCTCCCGGTTACTTTCG
GTGAAGACTTCACTGGATATATTGGTCCTATCATCCCTCCCATCTTGAAG
GACGATCCCGAACTTTCCGAATATGCATTGGATGGATTGAAACAAGTGAT
GGCCGTCAAATCGAAATCCGTTCTTCCCTTCTTGGTACCCAAACTGACCG
CACCACCGGTTAATACGAAGGCGCTGGCTATTTTATCCTCAGTGGCGGGT
GAAGCACTCATCAAACATTTGGAACGCATTTTACCAGCCATGATCCAAGC
CGTCAATGACGCGGAGGAAGGCAGTGAATCCGTGAGTCTCTAAGTCGCAG
CTCGAACTCTTGGTGACCTTGTCCGTAAACTTGGAGAACGAATCTTGCCC
GAAATTATCCCGATTTTGGAAAACGGACTCAGTAACCCAGACGGTGATAA
ACGTCAAGGTGTTTGTATCGGGTTAAGTGAGATCATGAACTCGACCAGCC
GTGATATGATCGCACAATTTGAAGACTCGCTTATCAATACTGTCCGCGCG
GCCTTGGTGGATCCTCTGGCGGACGTACGATTAGCTGCTTCAGAGACATT
TGAGAATCTACACAATGCGATTGGACATCGTGCGTTGGACGGTGTACTAC
CTGTGGTCTTCCCAAAATTGGTCATCTTACACACTCTCGGTAAAGATCAC
CGTAACCGGATTTACGCCGGTCTCTACATGGGCCGTTCGGACATTGCTTT
GACTGTGCGACAAGCGGCGTTGCACGTCTGGAAGGTCATCGTTCAGAACA
CGGCACGTACGTTGCGCGATATACTTCCAACGTTGTTCGAACTTTTGCTT
GGATGTTTGGCAAGTGAAAGTTATGACAAGAGACAGGGATTAGCGGACGA
ATCAGAGTATGTCCGGGAGACAGCTTTGAAAGCCGGACAACGCATCATCA
ACATGTATGCGGACACCGCCATCGAGTTCCTGTTACCACAATTGGAAGCC
GGTCTTTTCAACGGGCATTGGCGTATCCGGTATTCTTCCGTCCAACTACT
TGGTGATTTGCTGTTCAAGTTGTCAGGGGTTACTGGCAAACAAACGACAG
TCGGTGAAGAGGATGACAACTTCGGAACTGCTCATTCATCACAGATGCCA
TTTTTGGATTCTGCTCCCCGACTAACAGGTTTATCGGACGTTTTGTACGC
GTTGGGACAAGAGCGATTGGACAAACTGATGCCAGACGTCATCACCACTA
CAATGAAAGCAGATCTTGCACCAAACATCAGGGATGGCTACCTCATGTTG
TTCATCTACCTCCCGGTTACTTTCGGTGAAGACTTCACTGGATATATTGG
TCCTATCATCCCTCCCATCTTGAAGGACGATCCCGAACTTTCCGAATATG
CATTGGATGGATTGAAACAAGTGATGGCCGTCAAATCGAAATCCGTTCTT
CCCTTCTTGGTACCCAAACTGACCGCACCACCGGTTAATACGAAGGCGCT
GGCTATTTTATCCTCAGTGGCGGGTGAAGCACTCATCAAACATTTGGAAC
GCATTTTACCAGCCATGATCCAAGCCGTCAATGACGCGGAGGAAGGCAGT
GAATCCGTGAGTCTCTAAGTCGCAGCTCGAACTCTTGGTGACCTTGTCCG
TAAACTTGGAGAACGAATCTTGCCCGAAATTATCCCGATTTTGGAAAACG
GACTCAGTAACCCAGACGGTGATAAACGTCAAGGTGTTTGTATCGGGTTA
AGTGAGATCATGAACTCGACCAGCCGTGATATGATCGCACAATTTGAAGA
CTCGCTTATCAATACTGTCCGCGCGGCCTTGGTGGATCCTCTGGCGGACG
TACGATTAGCTGCTTCAGAGACATTTGAGAATCTACACAATGCGATTGGA
CATCGTGCGTTGGACGGTGTACTACCTGTGGTCTTCCCAAAATTGGTCAT
CTTACACACTCTCGGTAAAGATCACCGTAACCGGATTTACGCCGGTCTCT
ACATGGGCCGTTCGGACATTGCTTTGACTGTGCGACAAGCGGCGTTGCAC
GTCTGGAAGGTCATCGTTCAGAACACGGCACGTACGTTGCGCGATATACT
TCCAACGTTGTTCGAACTTTTGCTTGGATGTTTGGCAAGTGAAAGTTATG
ACAAGAGACAGGGATTAGCGGACGAATCAGAGTATGTCCGGGAGACAGCT
TTGAAAGCCGGACAACGCATCATCAACATGTATGCGGACACCGCCATCGA
GTTCCTGTTACCACAATTGGAAGCCGGTCTTTTCAACGGGCATTGGCGTA
TCCGGTATTCTTCCGTCCAACTACTTGGTGATTTGCTGTTCAAGTTGTCA
GGGGTTACTGGCAAACAAACGACAGTCGGTGAAGAGGATGACAACTTCGG
AACTGCTCATTCATCACAGATGCCATTTTTGGATTCTGCTCCCCGACTAA
CAGGTTTATCGGACGTTTTGTACGCGTTGGGACAAGAGCGATTGGACAAA
CTGATGCCAGACGTCATCACCACTACAATGAAAGCAGATCTTGCACCAAA
CATCAGGGATGGCTACCTCATGTTGTTCATCTACCTCCCGGTTACTTTCG
GTGAAGACTTCACTGGATATATTGGTCCTATCATCCCTCCCATCTTGAAG
GACGATCCCGAACTTTCCGAATATGCATTGGATGGATTGAAACAAGTGAT
GGCCGTCAAATCGAAATCCGTTCTTCCCTTCTTGGTACCCAAACTGACCG
CACCACCGGTTAATACGAAGGCGCTGGCTATTTTATCCTCAGTGGCGGGT
GAAGCACTCATCAAACATTTGGAACGCATTTTACCAGCCATGATCCAAGC
CGTCAATGACGCGGAGGAAGGCAGTGAATCCGTGAGTCTCTAAGTCGCAG
CTCGAACTCTTGGTGACCTTGTCCGTAAACTTGGAGAACGAATCTTGCCC
GAAATTATCCCGATTTTGGAAAACGGACTCAGTAACCCAGACGGTGATAA
ACGTCAAGGTGTTTGTATCGGGTTAAGTGAGATCATGAACTCGACCAGCC
GTGATATGATCGCACAATTTGAAGACTCGCTTATCAATACTGTCCGCGCG
GCCTTGGTGGATCCTCTGGCGGACGTACGATTAGCTGCTTCAGAGACATT
TGAGAATCTACACAATGCGATTGGACATCGTGCGTTGGACGGTGTACTAC
CTGTGGTCTTCCCAAAATTGGTCATCTTACACACTCTCGGTAAAGATCAC
CGTAACCGGATTTACGCCGGTCTCTACATGGGCCGTTCGGACATTGCTTT
GACTGTGCGACAAGCGGCGTTGCACGTCTGGAAGGTCATCGTTCAGAACA
CGGCACGTACGTTGCGCGATATACTTCCAACGTTGTTCGAACTTTTGCTT
GGATGTTTGGCAAGTGAAAGTTATGACAAGAGACAGGGATTAGCGGACGA
ATCAGAGTATGTCCGGGAGACAGCTTTGAAAGCCGGACAACGCATCATCA
ACATGTATGCGGACACCGCCATCGAGTTCCTGTTACCACAATTGGAAGCC
GGTCTTTTCAACGGGCATTGGCGTATCCGGTATTCTTCCGTCCAACTACT
TGGTGATTTGCTGTTCAAGTTGTCAGGGGTTACTGGCAAACAAACGACAG
TCGGTGAAGAGGATGACAACTTCGGAACTGCTCATTCATCACAGATGCCA
TTTTTGGATTCTGCTCCCCGACTAACAGGTTTATCGGACGTTTTGTACGC
GTTGGGACAAGAGCGATTGGACAAACTGATGCCAGACGTCATCACCACTA
CAATGAAAGCAGATCTTGCACCAAACATCAGGGATGGCTACCTCATGTTG
TTCATCTACCTCCCGGTTACTTTCGGTGAAGACTTCACTGGATATATTGG
TCCTATCATCCCTCCCATCTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022796XLOC_022796Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038147-exon-sc0001784-1575043694:23310..23773TCONS_00038147-exon-sc0001784-1575043694:23310..23773Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1575043694:22552..22809TCONS_00038147-exon-sc0001784-1575043694:22552..22809Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1575043694:21866..22081TCONS_00038147-exon-sc0001784-1575043694:21866..22081Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1575043694:21416..21742TCONS_00038147-exon-sc0001784-1575043694:21416..21742Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1575043694:20538..21091TCONS_00038147-exon-sc0001784-1575043694:20538..21091Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1510915933:23310..23773TCONS_00038147-exon-sc0001784-1510915933:23310..23773Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1510915933:22552..22809TCONS_00038147-exon-sc0001784-1510915933:22552..22809Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1510915933:21866..22081TCONS_00038147-exon-sc0001784-1510915933:21866..22081Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1510915933:21416..21742TCONS_00038147-exon-sc0001784-1510915933:21416..21742Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1510915933:20538..21091TCONS_00038147-exon-sc0001784-1510915933:20538..21091Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1491911889:23310..23773TCONS_00038147-exon-sc0001784-1491911889:23310..23773Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1491911889:22552..22809TCONS_00038147-exon-sc0001784-1491911889:22552..22809Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1491911889:21866..22081TCONS_00038147-exon-sc0001784-1491911889:21866..22081Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1491911889:21416..21742TCONS_00038147-exon-sc0001784-1491911889:21416..21742Clytia hemisphaericaexon
TCONS_00038147-exon-sc0001784-1491911889:20538..21091TCONS_00038147-exon-sc0001784-1491911889:20538..21091Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038147-proteinTCONS_00038147-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001784supercontigsc0001784:20538..23773 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.1965	5.81614	1.80664	1.60758	14.0158	9.93676	10.6928	13.7106	9.86829	10.8061	9.84367	7.30551	16.7195	19.2399	14.3522	19.6755	15.0243	15.6539	8.70491	9.19501	16.3977	15.0068	12.4415	16.1642	13.7985	15.096	8.09172	8.75839	13.8953	13.565
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011989ARM-like
IPR000357HEAT
IPR021133HEAT_type_2
IPR016024ARM-type_fold
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005488binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00038147 vs. Swiss-Prot (Human)
Match: GCN1 (eIF-2-alpha kinase activator GCN1 OS=Homo sapiens GN=GCN1 PE=1 SV=6)

HSP 1 Score: 511.146 bits (1315), Expect = 2.547e-160
Identity = 268/404 (66.34%), Postives = 331/404 (81.93%), Query Frame = 3 
Query:  267 GLSDVLYALGQERLDKLMPDVITTTMKADLAPNIRDGYLMLFIYLPVTFGEDFTGYIGXXXXXXLKGLADESEYVRETALKAGQRIINMYADTAIEFLLPQLEAGLFNGHWRIRYSSVQLLGDLLFKLSGVTGKQTT-VGEEDDNFGTAHSSQVILHTLGKDHRNRIYAGLYMGRSDIALTVRQAALHVWKVIVQNTARTLRDILPTLFELLLGCLASESYDKRQVAARTLGDLVRKLGERXXXXXXXXXXNGLSNPDGDKRQGVCIGLSEIMNSTSRDMIAQFEDSLINTVRAALVDPLADVRLAASETFENLHNAIGHRALDGVLPVVFPKLDDPELSEYALDGLKQVMAVKSKSVLPFLVPKLTAPPVNTKALAILSSVAGEALIKHLERILPAMIQAVND 1475
            GL++V+  LG E+L+KLMP+++ T  K D+AP++RDGY+M+F YLP+TFG+ FT Y+GPIIP ILK LADE+E+VR+TAL+AGQR+I+MYA+TAI  LLPQLE GLF+  WRIR+SSVQLLGDLLF +SGVTGK TT    EDDNFGTA S++ I+  LG + RNR+ AGLYMGRSD  L VRQA+LHVWK++V NT RTLR+ILPTLF LLLG LAS   DKR +AARTLGDLVRKLGE+ILPEIIPILE GL +   D+RQGVCIGLSEIM STSRD +  F +SL+ T R AL DPL +VR AA++TFE LH+ IGH+AL+ +LP +  +LDD E+SE+ALDGLKQVMA+KS+ VLP+LVPKLT PPVNT+ LA LSSVAG+AL +HL  ILPA++ A+ +
Sbjct: 1719 GLAEVMAGLGVEKLEKLMPEIVATASKVDIAPHVRDGYIMMFNYLPITFGDKFTPYVGPIIPCILKALADENEFVRDTALRAGQRVISMYAETAIALLLPQLEQGLFDDLWRIRFSSVQLLGDLLFHISGVTGKMTTETASEDDNFGTAQSNKAIITALGVERRNRVLAGLYMGRSDTQLVVRQASLHVWKIVVSNTPRTLREILPTLFGLLLGFLASTCADKRTIAARTLGDLVRKLGEKILPEIIPILEEGLRSQKSDERQGVCIGLSEIMKSTSRDAVLYFSESLVPTARKALCDPLEEVREAAAKTFEQLHSTIGHQALEDILPFLLKQLDDEEVSEFALDGLKQVMAIKSRVVLPYLVPKLTTPPVNTRVLAFLSSVAGDALTRHLGVILPAVMLALKE 2122
The following BLAST results are available for this feature:
BLAST of TCONS_00038147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GCN12.547e-16066.34eIF-2-alpha kinase activator GCN1 OS=Homo sapiens ... [more]
back to top