TCONS_00038143 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038143
Unique NameTCONS_00038143
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038143 ID=TCONS_00038143|Name=TCONS_00038143|organism=Clytia hemisphaerica|type=transcript|length=352bp
CAATCAGTCAGGTttcaaaagttaaagtaaaacatttcacaaaaattgat
aaaatatccaaaaatcaacaaaaacatgttgcGCTAAAGTCATGTATACA
TAGCAAAGTTTGCGGTAATCTTGCGATAACATCAACTTTGGGTGAAAACA
GCCACATAAGTGTGTCAAAATGTTCATTGAAAGTCCAGCATGACTCTCTT
TAGgcataaaaactttttgtgtgCATATTTCTATTCACATAGACTTGATG
ACAATGAGCTGGCTTGACCGAAGGAAGGCTGTTATGAGTGGCGGGTGTCA
GATGAGAATGTGCGTCTCCAGAAGTTAggtccagttcattataatgcaca
gt
Run BLAST on NCBI

transcript from alignment at sc0001782:15077..15428

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038143 ID=TCONS_00038143|Name=TCONS_00038143|organism=Clytia hemisphaerica|type=transcript|length=352bp|location=Sequence derived from alignment at sc0001782:15077..15428 (Clytia hemisphaerica)
actgtgcattataatgaactggaccTAACTTCTGGAGACGCACATTCTCA
TCTGACACCCGCCACTCATAACAGCCTTCCTTCGGTCAAGCCAGCTCATT
GTCATCAAGTCTATGTGAATAGAAATATGcacacaaaaagtttttatgcC
TAAAGAGAGTCATGCTGGACTTTCAATGAACATTTTGACACACTTATGTG
GCTGTTTTCACCCAAAGTTGATGTTATCGCAAGATTACCGCAAACTTTGC
TATGTATACATGACTTTAGCgcaacatgtttttgttgatttttggatatt
ttatcaatttttgtgaaatgttttactttaacttttgaaACCTGACTGAT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022792XLOC_022792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038143-exon-sc0001782-1491911889:15077..15428TCONS_00038143-exon-sc0001782-1491911889:15077..15428Clytia hemisphaericaexon
TCONS_00038143-exon-sc0001782-1510915933:15077..15428TCONS_00038143-exon-sc0001782-1510915933:15077..15428Clytia hemisphaericaexon
TCONS_00038143-exon-sc0001782-1575043694:15077..15428TCONS_00038143-exon-sc0001782-1575043694:15077..15428Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001782supercontigsc0001782:15077..15428 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.25344	7.82692	4.17926	2.37428	18.1927	11.0248	27.3551	22.0688	20.3509	29.7471	37.2783	12.6795	21.4936	15.0918	16.1689	20.1924	14.6816	15.142	19.3692	22.8874	33.3139	30.0746	21.2741	31.8253	6.58534	10.2892	63.8858	41.9139	84.6886	72.3011
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038143 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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