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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038140 ID=TCONS_00038140|Name=TCONS_00038140|organism=Clytia hemisphaerica|type=transcript|length=398bp
CTGAATCACAGAATTGTAACACGTTCCCATGTCCAAtcCACGGAGAATGG
GGACAATGGAGCAATTGGACAGAATGTGATAAACCGTGCGGTGTTGGATT
CCAAAACAGGTCACGTGTCTGCGATGACCCTGCACCCGCCCATGGTGGAG
ATGATTGTGTGGGAACACTCACAAGTCAAAGACAAATCTGCAATACCAAC
TACTGTCCAGAAATGTGCGATGAATTTTTCAAGATGTGTGACTGTATTAA
CGTGCCAGTGATTTATGATATGAGCATCCTCACAACAAACTCTTCATTTT
ATGGAATCAACGATACTGCGGTCAATTCTTCTCTTGATGCAATTTCCACC
TGGGATGCAGAAGCTGTCAAACTTGCATGTAAAAATGCTGAATGCAGT Run BLAST on NCBI transcript from alignment at sc0001782:12958..20940- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038140 ID=TCONS_00038140|Name=TCONS_00038140|organism=Clytia hemisphaerica|type=transcript|length=7983bp|location=Sequence derived from alignment at sc0001782:12958..20940- (Clytia hemisphaerica)
CTGAATCACAGAATTGTAACACGTTCCCATGTCCAAGTATGTCCACAAAA
TTTGATCCCAATTACGGGAACATTTTTACTATCAATAAAACCAAAAAAGA
CTTTAACTTTTAGAATATGAAAAGTATAATATTTTCCTCAGTTGAAAAAG
CAAATAATTCGAACTTGGACCTTCTGTTTTATTGTATTGTCACCTTTATC
TATTTGTCAATATAATACAGTTGACTCTCGTTAATTCGAACTCGAAAAGA
AAATCATAATTGTTCCAATAACAGAGAGACTTGAATTATAGAAAACATTT
TAAGGTGATTGCTCTTTGACGGGTAATGGAAACAGCTTCGAGTTCTAGAA
GTTCGAATAAATGAGAGTTTACTGTATCTGTTTATTTCAGTCCAGGGAGA
AAAAACGGAAAAATGAGTTGAGGTAAGGCATGGCTCAAACCGCAAGCAAA
TATTACAAAAAAAGGTTCAGTAATGTACGTAACTCTATAAGACACGTCTA
CCACATTACATAAATATATTTTTTTTTTAAGTTGATGGCGCTTGGACGAA
TTGGGCGAACTGGGCTACATGTTCTTTCCCTTGTGGAACAGGATCACAAA
GCCGAACAAGAACTTGTACAAACCCAACGCCTGAGCATGGTGGAAACCCT
TGCAGTGGCGATGGCACTGAATCACAGAATTGTAACACGTTCCCATGTCC
AAGTATGTTCACAAAATTTGATCCCAATTACGGGAACATTTTTACTATCA
ATAAAACCAAAGAAGACTTTAACTCATAGAATATGAAAAGTCAAATATTT
TCCTCAGTTGAAAAAGCAAATAATTCGAATTTGGACCCTTTTGTTTTATT
GTATAGTCACCTTAATCCCTTGCCCAGGTACAAATATTTTTCATGTTCTT
ATGGTTATGGTGTTCTAAGTTTATACCTTGACCTTTTAGCATGCTTTGAA
TATTTTGAATTTGCTTGGAGATCTCAGGAATGCTTCATCTTTATAAAAAC
ATGAGGGTACTTTTTGTAAAACACGGGCGTGATTCTTTTGAAAAATGACT
TCTACAGTCGTTTATATTCAGTATGAATATGCAGAATTTAGGTGTGGTAC
TCAAAACTTTAACAAATGATACAAACAAATGATTCACTGTTGTTTTCTGC
ATAATTGTAGTTGAGTCCCGACACGGGATTGTAATTCAATCCCGACGAAA
TTTTTAAGAATTTTCGTTAAGAAAGAACAAAAATGGCGGGACTGAACTGC
AAGTATATATAATAGTATTTGGCGAGACTGAACTACAGGTATATATATAG
TACTTGGCGGGACTAAACTGCAAGTATATATATATGGTGAAGATCAGAGA
TCTGACCTCAAGGAGTATTTGGCGGGGCTGAACTGCAAGTATCTATATAG
TAATTGAACAATAATTTTCTTTTTATTAGTTTAATTCCTTTAAAAGAAGG
ATTGGCGGCTTGAACTTTGAAACCAGGGGAGAACGGGGCTAATTATAAAT
AATACGCACTAATTATAAGACTTTTAAGTATTTGTCGGGGCTGAAATTCA
GTCCCGCCATTAAAATATCGGGACTGGAATGCAGTCCCGCCAACTATTTG
GCGGGACTAAACTGCAAGTATATATATAGTAATTGGCGGACTGAACTGCA
AGTATATACATAGTAATTGGCGGGACTGAACTGCAAGTATATATATAGTA
ACTGAGCAATAACTTTCCTTCTGTTAGTTTATTTAAAAAGTCCATACCAA
AGATACACTATTATAATTTAAAGCTCATTACCAATTATTGTTCGTTCTTT
AAAAGCCTTATAGAAAGGGGTTATTCTAAAGAACGGAAGATACACTATTG
TATCTTATAGTCCATATCCAAGTATTGCCCGTGCTTTAAAAGCATTATAG
AAAGGAGTTATTCTAAAGGACAGAAGATACACTATTATATCTTATATTCC
ATACCAAATTATTGCCCGTTCTTTAAAAGTATTATACAAAGAGGTTACTC
TAAAGAACGGTAGATAGACTATTATATCTTATAGTCCATACCCAAGTATT
GTTCATTCTTTAAAAGCATTATAGAAAGGAGTTATTGTAAAGAACGGAAG
ATACACTATTATATCTTATAGTCCATATCCAAGTATTGCCCGTTTTTTAA
AAGCATTATACAAAGGGGTTATTCTAAAGAACGGAAAATACACTATTATA
TCTTATAGTCCATACCCAAGTATTGTCCGTTCTTTAAAAGCATTATACAA
AGTGGTTATTCTAAAGAACGGAAGATACACTATTATATCTTATAGTCCAT
ACCCAAGTATTGTTCGTTCTTTAAAAGCATTATAGAAAGGAGTTATTCTA
AAGAACGGAAGATACACTATTATATCTTATAGTCCATATCCAAGTATTGC
CCGTTTTTTAAAAGCATTATACAAATGGTTTATTCTAAAGAACGGAAGAA
AAACTATTATATCTTATAGTCCATACCCAAATATTGTCCGTTCTTTAAAA
GCATTATAGAAAGGAGTTATTCTAAAGGACATAAGATACCCTATCATATC
TTATATTCCATACCAAATTATTGCCCGTTCTTTAAAAGTATTATACAAAG
AGGTTACTCTAAAGAACGGAAGATACACTAACATATTTTATAGTCCATAC
CCAAAGTATTGCCCTTTCTTTAAAAACACTATACAAAGTGGTTATTCTAA
AGTAATAGTAGCCATCAATTAAGTGAGTTTTCATTTTATTTCTTTACAAT
TTTTTCACAAATAAGATCATCAATTTATTAGATCTGAAAAAATCATTCCC
CCCGGGGAACTCAAGTGCAATTATGCCTTGTTTTCTATCGTCAGATAAGT
AACTCTATTTGACATGCCTCCTTTTCATATCTTCAATCAGCAATTACGAC
TTCCTATTATTTCCCTAAAGAAGGTTGTCGGAAAATATAGTGATGATCAT
GGCATCTATTTCTTTTTGTCATAGTTCATGGTGGCTGGACAGAATGGACG
AACTGGGCTACATGTTCTTTGACCTGCGGAACAGGATCACAAAATCGAAC
AAGAACTTGTACAAACCCAACGCCTGAGCATGGTGGAAACCCTTGCAGTG
GTGATGGCACTGAATCACAGGACTGTAACACTAATCCTTGCCCAGGTACG
GTACATACTTTTTTGAGGCGTACCAAAAATATTATATACTTCTTTCAGTG
CGAATTAAGTGACAGACATTATGAAAATAGTTTTTTATAGGAAATAACAC
TTCAACTTTTTGCAAATCTAACTTTTAAGAAGGATAGATTGTGTAAACAA
GCCATCAAAAATTCAATTTGACAACATTTAGTTCTGATGATTCAAAAGAC
TCTGCTATGCTATATCTATGTTATTTTACCAAATTTGCACAACTTTTTTA
TAATCGTTTCCTTTCGNATGCCCCCTTTTCATATCTTCAATCAGCGATTA
CGACTTCCTATTATTTCCCTAAAAGAAGGGTGTCGGAAAATATTTCGTAA
CTTTGTGAAAGGATTTATCTCACAAAATGTTATTTTACCAAATTTACACA
TTTTCTGTATACTCGTTTCCTTTCTGTTTTTCTTCTTCAGTCCACGGAGA
ATGGGGACAATGGAGCAATTGGACAGAATGTGATAAACCGTGCGGTGTTG
GATTCCAAAACAGGTCACGTGTCTGCGATGACCCTGCACCCGCCCATGGT
GGAGATGATTGTGTGGGAACACTCACAAGTCAAAGACAAATCTGCAATAC
CAACTACTGTCCAGGTACAAAATTCGAAAAGCCTAGGGATGGTAACTTTG
CCTTGCCAACCGACAGGGTTTCCGCTAAGCTACGAAAAATAGAGCAACGT
GGGACTCGTTTTTTGAAACTCTTCCACATCTTTCCCGATTCCGCGAAAAA
GGTACTCTACTAGGGACTGATTTTTCTATTCTGGTGTCTTTTCGACCCTA
CCAGGAACTCATCTCGCTCATTGAGGTAAAAAAAGATACTGTGACGAGAG
GCATTTCCCGGGCAAAACGCATGAAAACTTATGAATTAGTAAAAGATGCT
TTTGCATTGTAAATTAACAGAGCTACTACTTAGATTACTGTAATATCGTA
CTACTATTTCGTATATCATGGTCTTATCTACATGGGAGGTATCACTTCAT
ACATCGAAAGAAGCATGGAGTCTAGATCACTAGACTGGCTGTGTCATAAT
TAATTTTTAAACCAAAAAAAGAAAGATATTAATAAAAAATAAAAAAATGA
TGATGTCAGCAAAACTTGTTTTTTTTTACCAACTCCGGTTTGGCTGATGG
TATAAACATAAAATTCGGACCAAAGTTGCATATCACTAAAAGGATCATTT
TGAATAAAATATTTTTCAAATCTTGCTGGCGTCCACAGATCTGTAAAGCC
CGAAGGGCTAGATTTGCGGCCTTTATCGAAAAGTGAAGCCAAGGTTTGGA
AGGATTTCCTACCAAAGTCACGTGACTAAAATATGCAATTTCACCGGTTT
GAGAGATGTGAAATAGTGTTTTCCGTCTACTTTTTTTTTATCTCTCGCTC
CAAAAACAATTAAAATGCTAGATCCTATCCGCGGGCACGAAATTTAAAAA
GTCAAATTTTTGCTTCACTTTTTTTTGCTGGAGAAAGCTCTTGCCTATCT
AGCCCTTCGGGCTTTACAGATATCTGTGCTGGTGTCATCAGAAATCAGCA
AAATACGAAATTAAGTGCTGACGTCAGCAAAAGTTCAAAGTATCTATTTT
TTCATAATGATCCGTTCAATGGAATATTCTTTTAATAAAGGAAGCAATTT
CTATCAAAAGGCATTCTCCTATTTTGAATAGTGGCCTTAAAGTCTCTAGA
GATTTGTATCTATTTTCTTAGTTTTACAGCATTTTAATTAGTCATTTAAT
TGTTTTAGATTTTGAAATCGTTTTTAATAGGTAGTCTATACTGAGAAATG
GAAAAAGTCATTTTTTTATTTTTTTTGTAATAACTTTTGAAATATTTAAG
ATATCTCAATGAAACTTACTACAATGGTAGTACAACTATTAACAATGCAA
AATATGAAAAAAAATTCTAAAATTAGCACAGACGGGGGTGATACCAACCA
GGAGGTTACGTACTATAACTTTCTCAATACAGGTTTTTAAAGACTTCTAA
AACGTTTTAGCAAAAGATTTTTGGTATGGTGGTTGGTATTCATCAAAGGC
AGAGGATGTGTGAAAAAAAACCTAAATTTTATTCCAGGGGGTCTGAAACC
TAAAAAACGTAATTTTTGAAGATTTAAAACCAATAGCAGATTTTTTTGAA
TTTTTTCTTCACTCATCCTCTGCCAAATGGTACAAGAAACAACCCCTGAA
AATTTCATGGAGCTAGCACTTGTCAGTCCCGAGAAAAACCCGCATAGGCG
TTAGCAAACCCCCGGAATCGCATTTTGAGAAAATCAAAGAAAAGACAAAA
ATGGGTATTATTTTAAGCTGGAAAGCTCTTTTCAAAAAATTTCTTCACTG
AATACCCGCATCCAATCAGTCAGGTTTCAAAAGTTAAAGTAAAACATTTC
ACAAAAATTGATAAAATATCCAAAAATCAACAAAAACATGTTGCGCTAAA
GTCATGTATACATAGCAAAGTTTGCGGTAATCTTGCGATAACATCAACTT
TGGGTGAAAACAGCCACATAAGTGTGTCAAAATGTTCATTGAAAGTCCAG
CATGACTCTCTTTAGGCATAAAAACTTTTTGTGTGCATATTTCTATTCAC
ATAGACTTGATGACAATGAGCTGGCTTGACCGAAGGAAGGCTGTTATGAG
TGGCGGGTGTCAGATGAGAATGTGCGTCTCCAGAAGTTAGGTCCAGTTCA
TTATAATGCACAGTTACATCATGTTGTGCTCGGAAATATCTCAGTTAAAT
TTAAATCCACTACAAAACATTATGTGAGCCACCAAAAGCACACTGCCTAT
GCTCAAAACAAAATGGCGGCAACTTAAATGTTTTTCGTAGAAAAGAGCTT
TCTTTTTTGGTGTATCACATTGCTATGTTCCGGCCGAGATTGAAGAAATA
AGTCCTTAGCAACGGGATTTTTTCCGTTGCTAGGGCAATTTTTCAAGCAC
CCAGCAGGACAAAAATTCTCACTGCGGCCTGAAAAATAAAGATATCTCTC
TGAATTTTCCAGGAGATGTTCAGAAAGACCTCAAAACACCCAAAAACCAA
AATTTGACAATTTTTTCGATGATTTTCCATTTCTCAGTAGACTACCAACT
TAAGCTCAACTTTGTTTTACAGAAATCATTTGCCTTAATGATGTATATGA
TACTATACGAAATATAGCTGTTTTTAAATCAAAATTTTCATCTTTTGCTT
AGAATATCTTGGCTTGATCAATTTTCTCGGACTTGCTTTTATCCTTTATT
GATCCGTTCAATGTTGTACAACTTTTAGTTTTTTGTTATTGAAAAAACTA
ATCATGGTCTACACTCCAATACGTATGCTTTTTTCAAAGTATGAAAAGTG
ATATGATTAGACAAGTGGAAACGGTGATAAAACTACGGTAAATTTGGACG
TGTCTTAATTTGCTTGAGTCAGAATTGAATTTTCTTTCTCACATTTGTTT
ATAGTGTTACTACTTTTGTTACACTACCCTTCCTATTGTCGGTGATAAAA
ATGGTAAGATATCTACCAAAAGGTAAATTGGGACACGCTTTAAATTGCCA
GAGGATCTTCTATTGTGGGATAAATTGTTCTACCGAGTCCTGCTTTGGTC
CAATCATTTTCAACCGAACATTTCTCGGCCAAAAGTATGTGTGTATGACC
TTGATTAAAAATTTCAAAAGTTTTAGTTTCTTTCACGTTAAATCTGGTGA
AAATTGCAAAGTTTCCGTTTGAAAATGTTAACCCATATGTGGCATTTTTT
ATTTTCTTTCCAGAAATGTGCGATGAATTTTTCAAGATGTGTGACTGTAT
TAACGTGCCAGTGATTTATGATATGAGCATCCTCACAACAAACTCTTCAT
TTTATGGAATCAACGATACTGCGGTCAATTCTTCTCTTGATGCAATTTCC
ACCTGGGATGCAGAAGCTGTCAAACTTGCATGTAAAAGTAAGTTAATTGT
CCTTTTCAACATAGTAAGATGGTTAAGACCACGTTCACACGCGACGAACA
CACCTTATGTTGCACTCCGAAACAAAATGAAGCCATTTTATTGGACAAAA
CAAGTTCTACGTCGCTTCTAACCAATAGAATGGCTTCGTTTCGTTTCGGA
GCGAAACGGGACCATTACGTGCGACCATGGTCTTTAACATTGAAAACGAC
TCTTCTCTCAAAATGCATGAAAAATCCAACTTTAGCCTTCTGACATCCTC
TTCTGGTGTACTCCTGTACATTGAGTTTAAAGCCCGAAGGGCTAGAGTAG
AGTCTCTAACCTTTCTCAGGAAAGATAAAGTGAAGCCTTAAAAAATGCGC
GTATTTTTTAGGACAGATTGAATCTAGCAATTCCTTTGTTTAAGATTGAT
ATTTTTTTCGAAATTTAGCGGTAAATTTTACTTTCAGGCGAGCCAGCCGA
GCCCCTCAAGGCCGCACAACTTTGGTAGGATTTGTTGGCTTCAAATCCTA
CCAAAGAGATTGACTTCTAGCCTTCGGCTACTATTTCATTGCTCCTGTAT
TTGTAGAGGCCTGGGATTCAGTATCTTGTGTTTTCAAAGTATCGTTACCA
AATTACTGAAGTCTAGACATAATTAAGTTTTTTTTATAAGAACAAGTTAA
TAAGAACACTTTAAGACTTTACGGACAATAAACACCCAATTTCTTAGAAA
TGAAATAAAGAACATTTTAAGAACATTTTTAGGCATAAAACTCAAAATAT
TCAGAACATATATGAAGCTTTAAGAATTTTGGATGTTTTCATAAATGCGT
GGATAAAAAACAAAGGAATGAAAAAATAGCTATTGATCGTCTCTGTTTTT
TTCTAATAAACATTTCTAGATGCTGAATGCAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00038140-exon-sc0001782-1575043694:20905..20940 | TCONS_00038140-exon-sc0001782-1575043694:20905..20940 | Clytia hemisphaerica | exon |
| TCONS_00038140-exon-sc0001782-1575043694:17177..17350 | TCONS_00038140-exon-sc0001782-1575043694:17177..17350 | Clytia hemisphaerica | exon |
| TCONS_00038140-exon-sc0001782-1575043694:13854..14027 | TCONS_00038140-exon-sc0001782-1575043694:13854..14027 | Clytia hemisphaerica | exon |
| TCONS_00038140-exon-sc0001782-1575043694:12958..12971 | TCONS_00038140-exon-sc0001782-1575043694:12958..12971 | Clytia hemisphaerica | exon |
| TCONS_00038140-exon-sc0001782-1510915933:20905..20940 | TCONS_00038140-exon-sc0001782-1510915933:20905..20940 | Clytia hemisphaerica | exon |
| TCONS_00038140-exon-sc0001782-1510915933:17177..17350 | TCONS_00038140-exon-sc0001782-1510915933:17177..17350 | Clytia hemisphaerica | exon |
| TCONS_00038140-exon-sc0001782-1510915933:13854..14027 | TCONS_00038140-exon-sc0001782-1510915933:13854..14027 | Clytia hemisphaerica | exon |
| TCONS_00038140-exon-sc0001782-1510915933:12958..12971 | TCONS_00038140-exon-sc0001782-1510915933:12958..12971 | Clytia hemisphaerica | exon |
| TCONS_00038140-exon-sc0001782-1491911889:20905..20940 | TCONS_00038140-exon-sc0001782-1491911889:20905..20940 | Clytia hemisphaerica | exon |
| TCONS_00038140-exon-sc0001782-1491911889:17177..17350 | TCONS_00038140-exon-sc0001782-1491911889:17177..17350 | Clytia hemisphaerica | exon |
| TCONS_00038140-exon-sc0001782-1491911889:13854..14027 | TCONS_00038140-exon-sc0001782-1491911889:13854..14027 | Clytia hemisphaerica | exon |
| TCONS_00038140-exon-sc0001782-1491911889:12958..12971 | TCONS_00038140-exon-sc0001782-1491911889:12958..12971 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0001782 | supercontig | sc0001782:12958..20940 - |
Blast
BLAST of TCONS_00038140 vs. Swiss-Prot (Human)
Match: SEM5A (Semaphorin-5A OS=Homo sapiens GN=SEMA5A PE=1 SV=3) HSP 1 Score: 80.1073 bits (196), Expect = 9.264e-18 Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 3
Query: 3 ESQNCNTFPCPIHGEWGQWSNWTECDKPCGVGFQNRSRVCDDPAPAHGGDDCVGTLTSQRQICNTNYCPEMCDEFFKMCDC 245
E Q CN PCP+ G W WS WT+C CG G R+R C +PAPA+GGD C+G L ++ +CNT CPE E+ +C
Sbjct: 829 EYQECNILPCPVDGVWSCWSPWTKCSATCGGGHYMRTRSCSNPAPAYGGDICLG-LHTEEALCNTQPCPESWSEWSDWSEC 908
The following BLAST results are available for this feature:
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