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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038138 ID=TCONS_00038138|Name=TCONS_00038138|organism=Clytia hemisphaerica|type=transcript|length=149bp
CTGTGATTCAGTGCCATCACCACTGCAAGGGTTTCCACCATGCTCAGGAG
CTGGGTCAGTACAAGTTCTTGTTCGACTTTGCGATCCTGTTCCGCAAGGC
AAAGAACATGTAGCCCAGTTCGCCCAATTCGTCCAAACGCCAtcaactt Run BLAST on NCBI transcript from alignment at sc0001782:17821..21078+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038138 ID=TCONS_00038138|Name=TCONS_00038138|organism=Clytia hemisphaerica|type=transcript|length=3258bp|location=Sequence derived from alignment at sc0001782:17821..21078+ (Clytia hemisphaerica)
CTGTGATTCAGTGCCATCACCACTGCAAGGGTTTCCACCATGCTCAGGCG
TTGGGTTTGTACAAGTTCTTGTTCGATTTTGTGATCCTGTTCCGCAGGTC
AAAGAACATGTAGCCCAGTTCGTCCATTCTGTCCAGCCACCATGAACTAT
GACAAAAAGAAATAGATGCCATGATCATCACTATATTTTCCGACAACCTT
CTTTAGGGAAATAATAGGAAGTCGTAATTGCTGATTGAAGATATGAAAAG
GAGGCATGTCAAATAGAGTTACTTATCTGACGATAGAAAACAAGGCATAA
TTGCACTTGAGTTCCCCGGGGGGAATGATTTTTTCAGATCTAATAAATTG
ATGATcttatttgtgaaaaaattgtaaagaaataaaatgaaaactcaCTT
AATTGATGGCTACTATTACTTTAGAATAACCACTTTGTATAGTGTTTTTA
AAGAAAGGGCAATACTTTGGGTATGGACTATAAAATATGTtagtgtatct
tccgttctttagaGTAACCTCTTTGTATAATACTTTTAAAGAACGGGCAA
TAATTTGGTATGGAATATAAGATATGATAGGGTATCTTATGTCCTTTAGA
ATAACTCCTttctataatgcttttaaagaacggacAATATTTGGGTATGG
ACTATAAGATATAATAGTTTTtcttccgttctttagaataaaCCATttgt
ataatgcttttaaaaaacggGCAATACTTGGATATGGACTATAAGATATA
atagtgtatcttccgttctttagaataactcctttctataatgcttttaa
agaacgaaCAATACTTGGGTATGGACTATAAGATATAatagtgtatcttc
cgttctttagaataaccactttgtataatgcttttaaagaacggacAATA
CTTGGGTATGGACTATAAGATATAATAGTGTATTttccgttctttagaat
aacccctttgtataatgcttttaaaaaacggGCAATACTTGGATATGGAC
TATAAGATATAatagtgtatcttccgttctttaCAATAACTCCTttctat
aatgcttttaaagaatgaACAATACTTGGGTATGGACTATAAGATATAAT
AGTCTATCTACCGTTCTTTAGAGTAACCTCTTTGTATAATACTTTTAAAG
AACGGGCAATAATTTGGTATGGAATATAAGATATAATAGTGTATCTTCTG
TCCTTTAGAATAACTCCTttctataatgcttttaaagcACGGGCAATACT
TGGATATGGACTATAAGATACAatagtgtatcttccgttctttagaataa
cccctttctATAAGGCTTTTAAAGAACGAACAATAATTGGTAATGAGCTT
TAAATTATAATAGTGTATCTTTGGTATGGACTTTTTAAATAAACTAACAG
AAGGAAAGTTATTGCTCagttactatatatatacttgcagttcagtcccg
ccaattactatgtatatacttgcagttcagtccgccaattactatatata
tacttgcagtttagtCCCGCCAAATAGTTGGCGGGACTGCATTCCAGTCC
CGATATTTTAATGGCGGGACTGAATTTCAGCCCCGACAAATACTTAAAAG
TCTTATAATTAGTGCGTATTATTTATAATTAGCCCCGTTCTCCCCTGGTT
TCAAAGTTCAAGCCGCCAATCCTTCTTTTAAAGGAATTaaactaataaaa
agaaaattattgttCAATTACTATATAGATACTTGCAGTTCAGCCCCGCC
AAAtactccttgaggtcagatctctgatcttcaccatatatatatacttg
cagtttagtCCCGCCAAGTACTATATATATACCTGTAGTTCAGTCTCGCC
AAATACtattatatatacttgcagttcagtcccgccatttttgttctttc
ttaacgaaaattcttaaaaatttcgtcGGGATTGAATTACAATCCCGTGT
CGGGACTCAACTACAATTATGCAGAAAACAACAGTGAATCATTTGTTTGt
atcatttgttaaagttttgaGTACCACACCTAAATTCTGCATATTCATAC
TGAATATAAACGACTGTAGaagtcatttttcaaaagaatcaCGCCCGTGT
TTTACAAAAAGTACCCTCATGTTTTTATAAAGATGAAGCATTCCTGAGAT
CTCCaagcaaattcaaaatattcaaagcATGCTAAAAGGTCAAGGTATAA
ACTTAGAACACCATAACCATAagaacatgaaaaatatttgtacCTGGGCA
AGGGATTAAGGTGACTATACAATAAAACAAAAGGGTCCAAATTCgaatta
tttgctttttcaactGAGGAAAATATTTGACTTTTCATATTCTATGAGTT
AAAGTCTTCTTTGGTTTTATTGATAGTAAAAATGTTCCCGTAATTGGGAT
CAAATTTTGTGAACATACTTGGACATGGGAACGTGTTACAATTCTGTGAT
TCAGTGCCATCGCCACTGCAAGGGTTTCCACCATGCTCAGGCGTTGGGTT
TGTACAAGTTCTTGTTCGGCTTTGTGATCCTGTTCCACAAGGGAAAGAAC
ATGTAGCCCAGTTCGCCCAATTCGTCCAAGCGCCatcaacttaaaaaaaa
aatatatttatgtaATGTGGTAGACGTGTCTTATAGAGTTACGTACATTA
CTGAAcctttttttgtaatatttgCTTGCGGTTTGAGCCATGCCTTACCT
CAACTCATTTTTCCGTTTTTTCTCCCTGGACTGAAATAAACAGATACAGT
AAACTCTCATTTATTCGAACTTCTAGAACTCGAAGCTGTTTCCATTACCC
GTCAAAGAGCAATCAccttaaaatgttttctatAATTCAAGTCTCTCTGT
TATTGGAACAATTATGATTTTcttttcgagttcgaattaacgagagtcaa
ctgtattatATTGACAAATAGATAAAGGTGACAATACAATAAAACAGAAG
GTCCAAGTTCgaattatttgctttttcaactGAGGAAAATATTATACTTT
TCATATTCTAAAAGTTAAAGTCttttttggttttattgatAGTAAAAATG
TTCCCGTAATTGGGATCAAATTTTGTGGACATACTTGGACATGGGAACGT
GTTACAATTCTGTGATTCAGTACCATCGCCACTGCAAGGGTTTCCACCAT
GCTCAGGAGCTGGGTCAGTACAAGTTCTTGTTCGACTTTGCGATCCTGTT
CCGCAAGGCAAAGAACATGTAGCCCAGTTCGCCCAATTCGTCCAAACGCC
Atcaactt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038138-exon-sc0001782-1491911889:17821..17867 | TCONS_00038138-exon-sc0001782-1491911889:17821..17867 | Clytia hemisphaerica | exon |
| TCONS_00038138-exon-sc0001782-1510915933:17821..17867 | TCONS_00038138-exon-sc0001782-1510915933:17821..17867 | Clytia hemisphaerica | exon |
| TCONS_00038138-exon-sc0001782-1575043694:17821..17867 | TCONS_00038138-exon-sc0001782-1575043694:17821..17867 | Clytia hemisphaerica | exon |
| TCONS_00038138-exon-sc0001782-1491911889:20977..21078 | TCONS_00038138-exon-sc0001782-1491911889:20977..21078 | Clytia hemisphaerica | exon |
| TCONS_00038138-exon-sc0001782-1510915933:20977..21078 | TCONS_00038138-exon-sc0001782-1510915933:20977..21078 | Clytia hemisphaerica | exon |
| TCONS_00038138-exon-sc0001782-1575043694:20977..21078 | TCONS_00038138-exon-sc0001782-1575043694:20977..21078 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001782 | supercontig | sc0001782:17821..21078 + |
Blast
The following BLAST results are available for this feature:
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