TCONS_00038136 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038136
Unique NameTCONS_00038136
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038136 ID=TCONS_00038136|Name=TCONS_00038136|organism=Clytia hemisphaerica|type=transcript|length=614bp
ATACCATTTCATGCTTATTCCTGGTGAAGTCATCAAAAACCGCCCCAGTG
ACGATGAGTTTGTTGACCCAAACAAGAGATTCAAAATAGATGTTAAAAAG
AAACAGATCAAAGTTGGTGAAACTGAGgaagaaatcaaaagttttCTATC
ACGTTACCCAGATTTCTACGGGCCAAAACATTGCCTGGATTTTTTAAAAT
CCTTACCGGTGACAGAGGCTCAATACAAAgaaattcaaatgaaaattaaa
ctgGTATCACTTACTGATatagaaatgttttttgaagcATTTGAGGAAAA
ATTTTATGGCATTCTTGTTGAAAATTGTCCCTCTATCTATTCGAGCCGAC
TAAACACATACTTGCAGAAAGGAAAACTGCATTTTGACGACAAAGGAAGA
ATAGTTACACCCAATGACTTAAAGCTCCACACACAAACTGTTGATGtttt
gtttgaagaaaaaacaattacCTCTGTTTCTAACAGTTTACAAAAAAGAT
TCCAAAGAGAGATCAATCGTAAATCACCAAATCTGCATCTTGATGTAATA
TTGCCAGTGTTCTTCTCCTACTTCATGCAGAAGAAATTCAACATCAATGC
TCACGAAGTTCAAT
Run BLAST on NCBI

protein sequence of TCONS_00038136-protein

>TCONS_00038136-protein ID=TCONS_00038136-protein|Name=TCONS_00038136-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
YHFMLIPGEVIKNRPSDDEFVDPNKRFKIDVKKKQIKVGETEEEIKSFLS
RYPDFYGPKHCLDFLKSLPVTEAQYKEIQMKIKLVSLTDIEMFFEAFEEK
FYGILVENCPSIYSSRLNTYLQKGKLHFDDKGRIVTPNDLKLHTQTVDVL
FEEKTITSVSNSLQKRFQREINRKSPNLHLDVILPVFFSYFMQKKFNINA
HEVQ
Run BLAST on NCBI

transcript from alignment at sc0001780:36479..37092

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038136 ID=TCONS_00038136|Name=TCONS_00038136|organism=Clytia hemisphaerica|type=transcript|length=614bp|location=Sequence derived from alignment at sc0001780:36479..37092 (Clytia hemisphaerica)
ATTGAACTTCGTGAGCATTGATGTTGAATTTCTTCTGCATGAAGTAGGAG
AAGAACACTGGCAATATTACATCAAGATGCAGATTTGGTGATTTACGATT
GATCTCTCTTTGGAATCTTTTTTGTAAACTGTTAGAAACAGAGgtaattg
ttttttcttcaaacaaaaCATCAACAGTTTGTGTGTGGAGCTTTAAGTCA
TTGGGTGTAACTATTCTTCCTTTGTCGTCAAAATGCAGTTTTCCTTTCTG
CAAGTATGTGTTTAGTCGGCTCGAATAGATAGAGGGACAATTTTCAACAA
GAATGCCATAAAATTTTTCCTCAAATgcttcaaaaaacatttctatATCA
GTAAGTGATACcagtttaattttcatttgaatttcTTTGTATTGAGCCTC
TGTCACCGGTAAGGATTTTAAAAAATCCAGGCAATGTTTTGGCCCGTAGA
AATCTGGGTAACGTGATAGaaaacttttgatttcttcCTCAGTTTCACCA
ACTTTGATCTGTTTCTTTTTAACATCTATTTTGAATCTCTTGTTTGGGTC
AACAAACTCATCGTCACTGGGGCGGTTTTTGATGACTTCACCAGGAATAA
GCATGAAATGGTAT

Coding sequence (CDS) from alignment at sc0001780:36479..37092

>TCONS_00038136 ID=TCONS_00038136|Name=TCONS_00038136|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0001780:36479..37092 (Clytia hemisphaerica)
TTGAACTTCGTGAGCATTGATGTTGAATTTCTTCTGCATGAAGTAGGAGA
AGAACACTGGCAATATTACATCAAGATGCAGATTTGGTGATTTACGATTG
ATCTCTCTTTGGAATCTTTTTTGTAAACTGTTAGAAACAGAGgtaattgt
tttttcttcaaacaaaaCATCAACAGTTTGTGTGTGGAGCTTTAAGTCAT
TGGGTGTAACTATTCTTCCTTTGTCGTCAAAATGCAGTTTTCCTTTCTGC
AAGTATGTGTTTAGTCGGCTCGAATAGATAGAGGGACAATTTTCAACAAG
AATGCCATAAAATTTTTCCTCAAATgcttcaaaaaacatttctatATCAG
TAAGTGATACcagtttaattttcatttgaatttcTTTGTATTGAGCCTCT
GTCACCGGTAAGGATTTTAAAAAATCCAGGCAATGTTTTGGCCCGTAGAA
ATCTGGGTAACGTGATAGaaaacttttgatttcttcCTCAGTTTCACCAA
CTTTGATCTGTTTCTTTTTAACATCTATTTTGAATCTCTTGTTTGGGTCA
ACAAACTCATCGTCACTGGGGCGGTTTTTGATGACTTCACCAGGAATAAG
CATGAAATGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022786XLOC_022786Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038136-proteinTCONS_00038136-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038136-exon-sc0001780-1491911889:36479..37092TCONS_00038136-exon-sc0001780-1491911889:36479..37092Clytia hemisphaericaexon
TCONS_00038136-exon-sc0001780-1510915933:36479..37092TCONS_00038136-exon-sc0001780-1510915933:36479..37092Clytia hemisphaericaexon
TCONS_00038136-exon-sc0001780-1575043694:36479..37092TCONS_00038136-exon-sc0001780-1575043694:36479..37092Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001780supercontigsc0001780:36479..37092 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.525596	0.768809	0.297553	0.29111	0.708796	0.7468	2.02721	1.05436	0	0.457179	0.26625	0.175022	0.0582596	0.0605032	0	0.106761	0	0	0	0	0.084696	0.123935	0.10044	0.273943	0	0.167878	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038136 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top