TCONS_00038135 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038135
Unique NameTCONS_00038135
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length845

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038135 ID=TCONS_00038135|Name=TCONS_00038135|organism=Clytia hemisphaerica|type=transcript|length=845bp
tgaagattaaataaaatggtaaaTCTCAACATTttgctaaaatgaaaaat
tttttattttttcattctcagcctcagttGTTTCTATAGAGTTTAGGAAC
ATTTATTACATTATAACAAGAACCAAAAGTacgtttttgaaaatatgtta
ttattttggccaaaatttgtaGATAAATGAGTCGCGAGTTCccagttggg
gagttgctagtttcgagttggggattAATTTCACATTGCATTGATTTCAC
ATCGCGCCCTTTTATAATTGAATTTTATCTCTACGAACGAGTGTTTTATA
ATTGACACTCCTTCATAATGGGAGTAAGAAAGCAGTTTTCATTAATATCG
CAAATTGAGAAAGTAACGGATTACTCAAATTTCAATGCGGAGAAATGCGT
AAGTTTTATGTACTCTATTGTTAAATTTTGTATTTGTCCTGAGAACTAAT
CAGGGGGTATGAAGTACCAAAAACAATATGTTTTAGGCTAAAACTATTGA
CGCGAATCTAACACATATCCCCCGGAAAAGGATATACGGAAAtctaaaat
cgctagcgaaaatcaAAACGCTGCAAAAAAGGCTTCAGAAACGTCAGGCT
ATTATAATAAAGATTTACATATTCTATCGAATCGACGAATTAATCCGTGA
GGATTGTGTGTTGAAGATGATTGATTCTTTAATCAAGGTTCGCAATTTTT
TGGATGTGCCTTTCCTTGTATCTGTTCAAGGAAATTCGGCGTTGATCAAG
TCTGAAGATCTGTCTTTATGTGAGATCAGCGTGGTAAATAAGGAAGAATT
GATCGATTTGTTTTTGAGCAAATGCAAGTTGATCTTTCAGGATGA
Run BLAST on NCBI

transcript from alignment at sc0001780:34101..34945

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038135 ID=TCONS_00038135|Name=TCONS_00038135|organism=Clytia hemisphaerica|type=transcript|length=845bp|location=Sequence derived from alignment at sc0001780:34101..34945 (Clytia hemisphaerica)
TCATCCTGAAAGATCAACTTGCATTTGCTCAAAAACAAATCGATCAATTC
TTCCTTATTTACCACGCTGATCTCACATAAAGACAGATCTTCAGACTTGA
TCAACGCCGAATTTCCTTGAACAGATACAAGGAAAGGCACATCCAAAAAA
TTGCGAACCTTGATTAAAGAATCAATCATCTTCAACACACAATCCTCACG
GATTAATTCGTCGATTCGATAGAATATGTAAATCTTTATTATAATAGCCT
GACGTTTCTGAAGCCTTTTTTGCAGCGTTTtgattttcgctagcgatttt
agaTTTCCGTATATCCTTTTCCGGGGGATATGTGTTAGATTCGCGTCAAT
AGTTTTAGCCTAAAACATATTGTTTTTGGTACTTCATACCCCCTGATTAG
TTCTCAGGACAAATACAAAATTTAACAATAGAGTACATAAAACTTACGCA
TTTCTCCGCATTGAAATTTGAGTAATCCGTTACTTTCTCAATTTGCGATA
TTAATGAAAACTGCTTTCTTACTCCCATTATGAAGGAGTGTCAATTATAA
AACACTCGTTCGTAGAGATAAAATTCAATTATAAAAGGGCGCGATGTGAA
ATCAATGCAATGTGAAATTaatccccaactcgaaactagcaactccccaa
ctggGAACTCGCGACTCATTTATCtacaaattttggccaaaataataaca
tattttcaaaaacgtACTTTTGGTTCTTGTTATAATGTAATAAATGTTCC
TAAACTCTATAGAAACaactgaggctgagaatgaaaaaataaaaaatttt
tcattttagcaaAATGTTGAGAtttaccattttatttaatcttca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022785XLOC_022785Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038135-exon-sc0001780-1491911889:34101..34945TCONS_00038135-exon-sc0001780-1491911889:34101..34945Clytia hemisphaericaexon
TCONS_00038135-exon-sc0001780-1510915933:34101..34945TCONS_00038135-exon-sc0001780-1510915933:34101..34945Clytia hemisphaericaexon
TCONS_00038135-exon-sc0001780-1575043694:34101..34945TCONS_00038135-exon-sc0001780-1575043694:34101..34945Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001780supercontigsc0001780:34101..34945 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0557826	0.0543968	0.0631599	0	0	0.0594446	0.143435	0.0671409	0.141021	0	0	0.260056	0	0	0.0950256	0	0	0.0858427	0	0.0620512	0.269669	0.315684	0.127918	0	0.572424	0.374161	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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