TCONS_00038134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038134
Unique NameTCONS_00038134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038134 ID=TCONS_00038134|Name=TCONS_00038134|organism=Clytia hemisphaerica|type=transcript|length=443bp
ATCGAATCGACGAATTAATCCGTGAGGATTGTGTGTTGAAGATGATTGAT
TCTTTAATCAAGGTTCGCAATTTTTTGGATGTGCCTTTCCTTGTATCTGT
TCAAGGAAATTCGGCGTTGATCAAGTCTGAAGATCTGTCTTTATGTGAGA
TCAGCGTGGTAAATAAGGAAGAATTGATCGATTTGTTTTTGAGCAAATGC
AAGTTGATCTTTCAGGATGAGTCTACAGGCTTTGAGATAAACTTCTTGTT
CAATTGGATTGTTGATGACTCGATCTTCCATATACATTTTACAGATGAAT
TGATACTTGATTAATGAATTAATGATCTTCTTTCCTTCCTAAGTCCAGAA
GTAACACCTCCTTCGTGTTTACCGGATTCTTATCTTCTTCGCTGCGTGAC
CTTCCGCCATCTTTaaaaattgatgtagaaaagtgaattgacg
Run BLAST on NCBI

protein sequence of TCONS_00038134-protein

>TCONS_00038134-protein ID=TCONS_00038134-protein|Name=TCONS_00038134-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
RIDELIREDCVLKMIDSLIKVRNFLDVPFLVSVQGNSALIKSEDLSLCEI
SVVNKEELIDLFLSKCKLIFQDESTGFEINFLFNWIVDDSIFHIHFTDEL
ILD
Run BLAST on NCBI

transcript from alignment at sc0001780:32085..32527

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038134 ID=TCONS_00038134|Name=TCONS_00038134|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at sc0001780:32085..32527 (Clytia hemisphaerica)
cgtcaattcacttttctacatcaatttttAAAGATGGCGGAAGGTCACGC
AGCGAAGAAGATAAGAATCCGGTAAACACGAAGGAGGTGTTACTTCTGGA
CTTAGGAAGGAAAGAAGATCATTAATTCATTAATCAAGTATCAATTCATC
TGTAAAATGTATATGGAAGATCGAGTCATCAACAATCCAATTGAACAAGA
AGTTTATCTCAAAGCCTGTAGACTCATCCTGAAAGATCAACTTGCATTTG
CTCAAAAACAAATCGATCAATTCTTCCTTATTTACCACGCTGATCTCACA
TAAAGACAGATCTTCAGACTTGATCAACGCCGAATTTCCTTGAACAGATA
CAAGGAAAGGCACATCCAAAAAATTGCGAACCTTGATTAAAGAATCAATC
ATCTTCAACACACAATCCTCACGGATTAATTCGTCGATTCGAT

Coding sequence (CDS) from alignment at sc0001780:32085..32527

>TCONS_00038134 ID=TCONS_00038134|Name=TCONS_00038134|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0001780:32085..32527 (Clytia hemisphaerica)
TTAATCAAGTATCAATTCATCTGTAAAATGTATATGGAAGATCGAGTCAT
CAACAATCCAATTGAACAAGAAGTTTATCTCAAAGCCTGTAGACTCATCC
TGAAAGATCAACTTGCATTTGCTCAAAAACAAATCGATCAATTCTTCCTT
ATTTACCACGCTGATCTCACATAAAGACAGATCTTCAGACTTGATCAACG
CCGAATTTCCTTGAACAGATACAAGGAAAGGCACATCCAAAAAATTGCGA
ACCTTGATTAAAGAATCAATCATCTTCAACACACAATCCTCACGGATTAA
TTCGTCGATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022784XLOC_022784Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038134-proteinTCONS_00038134-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038134-exon-sc0001780-1491911889:32085..32527TCONS_00038134-exon-sc0001780-1491911889:32085..32527Clytia hemisphaericaexon
TCONS_00038134-exon-sc0001780-1510915933:32085..32527TCONS_00038134-exon-sc0001780-1510915933:32085..32527Clytia hemisphaericaexon
TCONS_00038134-exon-sc0001780-1575043694:32085..32527TCONS_00038134-exon-sc0001780-1575043694:32085..32527Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001780supercontigsc0001780:32085..32527 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.151614	0	0	0.167948	0	0	0	0.182486	0	0.158254	0.153606	0	0.100834	0	0	0.184779	0	0.233316	0	0	0.586357	0	0	0	3.01493	1.88862	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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