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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038132 ID=TCONS_00038132|Name=TCONS_00038132|organism=Clytia hemisphaerica|type=transcript|length=1027bp
aaaagaagtcAACCAGAAACTGATTCAAGTACAGATGATGAAGACGCATT
TGAAAGGTGTAAGTATTTATGATTTTACCTGATTCCATTTTTATGCTAAG
ACAAATTTACAACGTCGTACCAGTGTGGAATTTGTGCAAAAGCCACGCCA
AATATCTGTTTTGATAAATCAAAGGTTGCGTCAAAGGCGTTGTAAATTTT
TTCCGAAGGCGGAAGCGGGTGTTGTAGGCTCTCGCAATTTTGCATTTATG
TCCATTTCGTTATGCTAGCTGTTGGGCGGTGGGAATGGCAGGGAACTGGA
AGCTGAATATATTCCACGCTGATATGCTGACCAAATCTTGAAGCTCAtgc
cgaatatattcggcgtactGTTGTGCACCAATTCTGTCAGTCTGTGCTGG
CCATCAAAAGTTCCAGGGGGTTTGTgtaaaaagtttgtcaatacccctgt
atactttttaaatggaatagcccaatagccCAATTTGTTGAAAAAACCTG
GAAGTTCGATTAGTCCGATTAATCGTTCGATCAGGTTGGAATCCGGTGGG
AATGGCAGGGAACTGGAAGCTGAATATATTCCACGCTGATATGCTGACCA
AATCTTGAAGCTCAtgccgaatatattcggcgtactGTTGTGCACCAATT
CTGTCAGTCTGTGCTGGCCATCAAAAGTTCCAGGGGGTTTGTgtaaaaag
tttgtcaatacccctgtatactttttaaatggaatagcccaatagcccaa
ttttttgaaaaaacctggAAGTTCGATTAGTCCGATTAATCGTTCGATca
ggttcgattggttcgattaaaaaaTCAGTTCGATTAGTTCCATTGATCAG
GTCTGGCTGGAAagggaaattttagaattttcttgTAAATTTCCCTGAAA
AAAGACGTGGAAATCTCAATTAACACTACCTATCTTGTTTTTACAGATGG
CAAGCAGTGGAGTGTCGAGAAGCTATTGAATGGAGGAAGTAAAAGCATTA
ACAAAATTCGGACAAGCCGTCCCAATG Run BLAST on NCBI protein sequence of TCONS_00038132-protein >TCONS_00038132-protein ID=TCONS_00038132-protein|Name=TCONS_00038132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
MSFKIWSAYQRGIYSASSSLPFPPDSNLIERLIGLIELPGFFNKLGYWAI
PFKKYTGVLTNFLHKPPGTFDGQHRLTELVHNSTPNIFGMSFKIWSAYQR
GIYSASSSLPFPPPNS Run BLAST on NCBI transcript from alignment at sc0001780:992..2018 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038132 ID=TCONS_00038132|Name=TCONS_00038132|organism=Clytia hemisphaerica|type=transcript|length=1027bp|location=Sequence derived from alignment at sc0001780:992..2018 (Clytia hemisphaerica)
CATTGGGACGGCTTGTCCGAATTTTGTTAATGCTTTTACTTCCTCCATTC
AATAGCTTCTCGACACTCCACTGCTTGCCATCTGTAAAAACAAGATAGGT
AGTGTTAATTGAGATTTCCACGTCTTTTTTCAGGGAAATTTAcaagaaaa
ttctaaaatttccctTTCCAGCCAGACCTGATCAATGGAACTAATCGAAC
TGAttttttaatcgaaccaatcgaacctgATCGAACGATTAATCGGACTA
ATCGAACTTccaggttttttcaaaaaattgggctattgggctattccatt
taaaaagtatacaggggtattgacaaactttttacACAAACCCCCTGGAA
CTTTTGATGGCCAGCACAGACTGACAGAATTGGTGCACAACagtacgccg
aatatattcggcaTGAGCTTCAAGATTTGGTCAGCATATCAGCGTGGAAT
ATATTCAGCTTCCAGTTCCCTGCCATTCCCACCGGATTCCAACCTGATCG
AACGATTAATCGGACTAATCGAACTTCCAGGTTTTTTCAACAAATTGggc
tattgggctattccatttaaaaagtatacaggggtattgacaaacttttt
acACAAACCCCCTGGAACTTTTGATGGCCAGCACAGACTGACAGAATTGG
TGCACAACagtacgccgaatatattcggcaTGAGCTTCAAGATTTGGTCA
GCATATCAGCGTGGAATATATTCAGCTTCCAGTTCCCTGCCATTCCCACC
GCCCAACAGCTAGCATAACGAAATGGACATAAATGCAAAATTGCGAGAGC
CTACAACACCCGCTTCCGCCTTCGGAAAAAATTTACAACGCCTTTGACGC
AACCTTTGATTTATCAAAACAGATATTTGGCGTGGCTTTTGCACAAATTC
CACACTGGTACGACGTTGTAAATTTGTCTTAGCATAAAAATGGAATCAGG
TAAAATCATAAATACTTACACCTTTCAAATGCGTCTTCATCATCTGTACT
TGAATCAGTTTCTGGTTgacttctttt Coding sequence (CDS) from alignment at sc0001780:992..2018 >TCONS_00038132 ID=TCONS_00038132|Name=TCONS_00038132|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0001780:992..2018 (Clytia hemisphaerica)
aTGAGCTTCAAGATTTGGTCAGCATATCAGCGTGGAATATATTCAGCTTC
CAGTTCCCTGCCATTCCCACCGGATTCCAACCTGATCGAACGATTAATCG
GACTAATCGAACTTCCAGGTTTTTTCAACAAATTGggctattgggctatt
ccatttaaaaagtatacaggggtattgacaaactttttacACAAACCCCC
TGGAACTTTTGATGGCCAGCACAGACTGACAGAATTGGTGCACAACagta
cgccgaatatattcggcaTGAGCTTCAAGATTTGGTCAGCATATCAGCGT
GGAATATATTCAGCTTCCAGTTCCCTGCCATTCCCACCGCCCAACAGCTA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038132-exon-sc0001780-1491911889:992..2018 | TCONS_00038132-exon-sc0001780-1491911889:992..2018 | Clytia hemisphaerica | exon |
| TCONS_00038132-exon-sc0001780-1510915933:992..2018 | TCONS_00038132-exon-sc0001780-1510915933:992..2018 | Clytia hemisphaerica | exon |
| TCONS_00038132-exon-sc0001780-1575043694:992..2018 | TCONS_00038132-exon-sc0001780-1575043694:992..2018 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001780 | supercontig | sc0001780:992..2018 . |
Blast
The following BLAST results are available for this feature:
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