TCONS_00038131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038131
Unique NameTCONS_00038131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1082

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038131 ID=TCONS_00038131|Name=TCONS_00038131|organism=Clytia hemisphaerica|type=transcript|length=1082bp
GTATAAGTGATTTAGGTCTTGCTGTTCTTCACAAAACATCAGAGAATAAA
CTAGACATTAATACACAGAACTATCGTGTAGGCACCAAAAGGTATATGGC
TCCTGAGGTGTTAGATGAAACAATTTCGCGGACAAATTTCGAAGCCTTTA
AAGCGGCTGATATTTATTCGTTCGGCCTTGTGTTGTGGGAAATTGCACGA
AGAACCGAAATTGATGGTGTTGTGGAGGATTACCAACCACCGTTTTATGA
TGTTCTACCACCTGATCCTCCTTTTGATTTTGTCAAGAAAGTTGTGAAAG
ATGACAATTATCGTCCCCAGATCCCCTCCACGTGGACGCAACACGAGGTG
TTATCGAGATACGTGAAGGTGATGGTGGAATGTTGGTATGGCCTCCCCTC
CGCTCGCTCGAAAAGCCAACGtgtgaagaaaaatttgaacacaTTACTGA
GTAAGGTTGCATGCCATCCCAACAGTAAATCATTGATCAAAGAACCACAG
ACTGTTTGTTTCGATTTCAATAATCGCGGTAATGAACTCTTAACGAGCGG
CACCTACCGCTCAAATACAACGGGTGGCGCCACCCAAAGCACCATGGTAA
CAGATCATTCTCTCTCTTTGAATATTAACGAGCCTTCACTGAAGGAAGTG
ATCGAACCATCAGCTTGTGAAAGCGATCAACTTTTATTacctaaataatt
ttttatacgtttttttatacaTAGCattcgttcttttgttttatctaact
ttaaattcttttacatatacttgaaatttattttgtggtTATTGGCGGTA
TCTTACTCTGTTGCTTCGCTTTAAAATTAGAAATAAGATATTTCGTCAAA
TATATTTCCTCAATCTCTGAGTTGGAATGCAACTTTTTCTCATACATGTC
AATGAAGAGTGGATTTGTTTTCAGTTATACCCAATAGCGCCATTCCACTc
tctataaaaatgaaataaatcatactttccaataaaaaaatGTCACGTGT
CACTGTACAGCTtgaaatgatgtttttaaaaaattgttttttgtaaatat
ttagaTGTATCATAATTTTATCAACCACTGTC
Run BLAST on NCBI

protein sequence of TCONS_00038131-protein

>TCONS_00038131-protein ID=TCONS_00038131-protein|Name=TCONS_00038131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
ISDLGLAVLHKTSENKLDINTQNYRVGTKRYMAPEVLDETISRTNFEAFK
AADIYSFGLVLWEIARRTEIDGVVEDYQPPFYDVLPPDPPFDFVKKVVKD
DNYRPQIPSTWTQHEVLSRYVKVMVECWYGLPSARSKSQRVKKNLNTLLS
KVACHPNSKSLIKEPQTVCFDFNNRGNELLTSGTYRSNTTGGATQSTMVT
DHSLSLNINEPSLKEVIEPSACESDQLLLPK
Run BLAST on NCBI

transcript from alignment at sc0001780:15592..17574+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038131 ID=TCONS_00038131|Name=TCONS_00038131|organism=Clytia hemisphaerica|type=transcript|length=1983bp|location=Sequence derived from alignment at sc0001780:15592..17574+ (Clytia hemisphaerica)
GTATAAGTGATTTAGGTCTTGCTGTTCTTCACAAAACATCAGAGAATAAA
CTAGACATTAATACACAGAACTATCGTGTAGGCACCAAAAGGTATATGGC
TCCTGAGGTGTTAGATGAAACAATTTCGCGGACAAATTTCGAAGCCTTTA
AAGCGGCTGATATTTATTCGTTCGGCCTTGTGTTGTGGGAAATTGCACGA
AGAACCGAAATTGATGGTAAGAACCTCACTCATGGCTTAAAACTCAGTGA
ATATTGATATCCTAATCATTTTTGTCGACACCCCTCACTTTCAGTTGAAC
AGACTGATTGCTAACCTTGTCACAACATACagtctctaattcgaatctct
attattcgaatctttctgtaattcgaactaaaatattggtcccctgagct
ggaaagtggtttaaagtattctctgtaattcgaaactTTCTCTAATTGAA
atggaaatataaaaaaaccctAAGGTGGTTGACATTACACCTCTTTGACG
TAGGGGATGTAGACTGTTTCTGGGATAGCCCATTCAGCGGATAACGATAG
AAACACTCAaaagacattttctttgttgTAGGTGTTGTGGAGGATTACCA
ACCACCGTTTTATGATGTTCTACCACCTGATCCTCCTTTTGATTTTGTCA
AGAAAGTTGTGAAAGATGACAATTATCGTCCCCAGATCCCCTCCACGTGG
ACGCAACACGAGGTTTGTAAAGTTCTTCCTTTGCGCCTGCTCCAGGGTCG
TATCCAATGAGCTTTTTATAAAACCTGGAGGCAGTTTTTTTATCCTggca
aaacaaaatctttacttattggagtttttttggaagtGGTACTCTAatgc
attgagtttaaagcccgaagggctagaggtaaatctttaacctttcttag
gcaagaaaaagtaaagccttaaaaaatgcgccgtatttttgatgacagat
tgaatctagcaattcctttgtttacgatttatatttttttcgaaatttag
cggtaaattttagtttcaatctgtcatttgtgtaaaaaccaggcgagccg
ctcaaggccgcgcaactttggtaggatttgttggcttctagccttcggct
tctaCATCATTGCTCTAATAGTACATAGTTATGACGACAAATTCGTTGAG
TTGTGAGTTGACCTACTTCGAGTAGTGCTACCAATAAGGTAAGATggttc
aggatttaaatttttaatcCAAACTTAATACTACTTAATTGAATTCAGGT
GTTATCGAGATACGTGAAGGTGATGGTGGAATGTTGGTATGGCCTCCCCT
CCGCTCGCTCGAAAAGCCAACGtgtgaagaaaaatttgaacacaTTACTG
AGTAAGGTTGCATGCCATCCCAACAGTAAATCATTGATCAAAGAACCACA
GACTGTTTGTTTCGATTTCAATAATCGCGGTAATGAACTCTTAACGAGCG
GCACCTACCGCTCAAATACAACGGGTGGCGCCACCCAAAGCACCATGGTA
ACAGATCATTCTCTCTCTTTGAATATTAACGAGCCTTCACTGAAGGAAGT
GATCGAACCATCAGCTTGTGAAAGCGATCAACTTTTATTacctaaataat
tttttatacgtttttttatacaTAGCattcgttcttttgttttatctaac
tttaaattcttttacatatacttgaaatttattttgtggtTATTGGCGGT
ATCTTACTCTGTTGCTTCGCTTTAAAATTAGAAATAAGATATTTCGTCAA
ATATATTTCCTCAATCTCTGAGTTGGAATGCAACTTTTTCTCATACATGT
CAATGAAGAGTGGATTTGTTTTCAGTTATACCCAATAGCGCCATTCCACT
ctctataaaaatgaaataaatcatactttccaataaaaaaatGTCACGTG
TCACTGTACAGCTtgaaatgatgtttttaaaaaattgttttttgtaaata
tttagaTGTATCATAATTTTATCAACCACTGTC

Coding sequence (CDS) from alignment at sc0001780:15592..17574+

>TCONS_00038131 ID=TCONS_00038131|Name=TCONS_00038131|organism=Clytia hemisphaerica|type=CDS|length=2088bp|location=Sequence derived from alignment at sc0001780:15592..17574+ (Clytia hemisphaerica)
ATAAGTGATTTAGGTCTTGCTGTTCTTCACAAAACATCAGAGAATAAACT
AGACATTAATACACAGAACTATCGTGTAGGCACCAAAAGGTATATGGCTC
CTGAGGTGTTAGATGAAACAATTTCGCGGACAAATTTCGAAGCCTTTAAA
GCGGCTGATATTTATTCGTTCGGCCTTGTGTTGTGGGAAATTGCACGAAG
AACCGAAATTGATGGTGTTGTGGAGGATTACCAACCACCGTTTTATGATG
TTCTACCACCTGATCCTCCTTTTGATTTTGTCAAGAAAGTTGTGAAAGAT
GACAATTATCGTCCCCAGATCCCCTCCACGTGGACGCAACACGAGGTGTT
ATCGAGATACGTGAAGGTGATGGTGGAATGTTGGTATGGCCTCCCCTCCG
CTCGCTCGAAAAGCCAACGtgtgaagaaaaatttgaacacaTTACTGAGT
AAGGTTGCATGCCATCCCAACAGTAAATCATTGATCAAAGAACCACAGAC
TGTTTGTTTCGATTTCAATAATCGCGGTAATGAACTCTTAACGAGCGGCA
CCTACCGCTCAAATACAACGGGTGGCGCCACCCAAAGCACCATGGTAACA
GATCATTCTCTCTCTTTGAATATTAACGAGCCTTCACTGAAGGAAGTGAT
CGAACCATCAGCTTGTGAAAGCGATCAACTTTTATTacctaaataaATAA
GTGATTTAGGTCTTGCTGTTCTTCACAAAACATCAGAGAATAAACTAGAC
ATTAATACACAGAACTATCGTGTAGGCACCAAAAGGTATATGGCTCCTGA
GGTGTTAGATGAAACAATTTCGCGGACAAATTTCGAAGCCTTTAAAGCGG
CTGATATTTATTCGTTCGGCCTTGTGTTGTGGGAAATTGCACGAAGAACC
GAAATTGATGGTGTTGTGGAGGATTACCAACCACCGTTTTATGATGTTCT
ACCACCTGATCCTCCTTTTGATTTTGTCAAGAAAGTTGTGAAAGATGACA
ATTATCGTCCCCAGATCCCCTCCACGTGGACGCAACACGAGGTGTTATCG
AGATACGTGAAGGTGATGGTGGAATGTTGGTATGGCCTCCCCTCCGCTCG
CTCGAAAAGCCAACGtgtgaagaaaaatttgaacacaTTACTGAGTAAGG
TTGCATGCCATCCCAACAGTAAATCATTGATCAAAGAACCACAGACTGTT
TGTTTCGATTTCAATAATCGCGGTAATGAACTCTTAACGAGCGGCACCTA
CCGCTCAAATACAACGGGTGGCGCCACCCAAAGCACCATGGTAACAGATC
ATTCTCTCTCTTTGAATATTAACGAGCCTTCACTGAAGGAAGTGATCGAA
CCATCAGCTTGTGAAAGCGATCAACTTTTATTacctaaataaATAAGTGA
TTTAGGTCTTGCTGTTCTTCACAAAACATCAGAGAATAAACTAGACATTA
ATACACAGAACTATCGTGTAGGCACCAAAAGGTATATGGCTCCTGAGGTG
TTAGATGAAACAATTTCGCGGACAAATTTCGAAGCCTTTAAAGCGGCTGA
TATTTATTCGTTCGGCCTTGTGTTGTGGGAAATTGCACGAAGAACCGAAA
TTGATGGTGTTGTGGAGGATTACCAACCACCGTTTTATGATGTTCTACCA
CCTGATCCTCCTTTTGATTTTGTCAAGAAAGTTGTGAAAGATGACAATTA
TCGTCCCCAGATCCCCTCCACGTGGACGCAACACGAGGTGTTATCGAGAT
ACGTGAAGGTGATGGTGGAATGTTGGTATGGCCTCCCCTCCGCTCGCTCG
AAAAGCCAACGtgtgaagaaaaatttgaacacaTTACTGAGTAAGGTTGC
ATGCCATCCCAACAGTAAATCATTGATCAAAGAACCACAGACTGTTTGTT
TCGATTTCAATAATCGCGGTAATGAACTCTTAACGAGCGGCACCTACCGC
TCAAATACAACGGGTGGCGCCACCCAAAGCACCATGGTAACAGATCATTC
TCTCTCTTTGAATATTAACGAGCCTTCACTGAAGGAAGTGATCGAACCAT
CAGCTTGTGAAAGCGATCAACTTTTATTacctaaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022781XLOC_022781Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038131-proteinTCONS_00038131-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038131-exon-sc0001780-1491911889:15592..15807TCONS_00038131-exon-sc0001780-1491911889:15592..15807Clytia hemisphaericaexon
TCONS_00038131-exon-sc0001780-1510915933:15592..15807TCONS_00038131-exon-sc0001780-1510915933:15592..15807Clytia hemisphaericaexon
TCONS_00038131-exon-sc0001780-1575043694:15592..15807TCONS_00038131-exon-sc0001780-1575043694:15592..15807Clytia hemisphaericaexon
TCONS_00038131-exon-sc0001780-1491911889:16173..16303TCONS_00038131-exon-sc0001780-1491911889:16173..16303Clytia hemisphaericaexon
TCONS_00038131-exon-sc0001780-1510915933:16173..16303TCONS_00038131-exon-sc0001780-1510915933:16173..16303Clytia hemisphaericaexon
TCONS_00038131-exon-sc0001780-1575043694:16173..16303TCONS_00038131-exon-sc0001780-1575043694:16173..16303Clytia hemisphaericaexon
TCONS_00038131-exon-sc0001780-1491911889:16840..17574TCONS_00038131-exon-sc0001780-1491911889:16840..17574Clytia hemisphaericaexon
TCONS_00038131-exon-sc0001780-1510915933:16840..17574TCONS_00038131-exon-sc0001780-1510915933:16840..17574Clytia hemisphaericaexon
TCONS_00038131-exon-sc0001780-1575043694:16840..17574TCONS_00038131-exon-sc0001780-1575043694:16840..17574Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001780supercontigsc0001780:15592..17574 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.16045	1.69913	3.04896	3.50431	7.41511	5.92085	6.03066	8.22294	5.51903	8.20284	5.61118	4.60715	9.74998	9.53231	11.2166	15.8267	14.3359	13.9401	10.7289	9.65008	11.5749	14.2555	12.3958	12.6604	7.44427	9.52236	43.3157	32.4227	37.0454	37.657
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001245Ser-Thr/Tyr_kinase_cat_dom
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00038131 vs. Swiss-Prot (Human)
Match: TGFR1 (TGF-beta receptor type-1 OS=Homo sapiens GN=TGFBR1 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 5.258e-36
Identity = 78/148 (52.70%), Postives = 104/148 (70.27%), Query Frame = 3 
Query:    3 ISDLGLAVLHKTSENKLDINTQNYRVGTKRYMAPEVLDETISRTNFEAFKAADIYSFGLVLWEIARRTEIDGVVEDYQXXXXXXXXXXXXXXXXXXXXXXXNYRPQIPSTWTQHEVLSRYVKVMVECWYGLPSARSKSQRVKKNLNTL 446
            I+DLGLAV H ++ + +DI   N+RVGTKRYMAPEVLD++I+  +FE+FK ADIY+ GLV WEIARR  I G+ EDYQ P+YD++P DP  + ++KVV +   RP IP+ W   E L    K+M ECWY   +AR  + R+KK L+ L
Sbjct:  349 IADLGLAVRHDSATDTIDI-APNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 495
The following BLAST results are available for this feature:
BLAST of TCONS_00038131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TGFR15.258e-3652.70TGF-beta receptor type-1 OS=Homo sapiens GN=TGFBR1... [more]
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