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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00038130 ID=TCONS_00038130|Name=TCONS_00038130|organism=Clytia hemisphaerica|type=transcript|length=241bp
gGACTACGACCATTTTGTTGCAGCCGGTTTTTGTGGGATCGGTCACGCAG
TGGATCTCCGCCATGAAGGAAAAGTGGCGTCACATACCAGCGGACCCGCA
GGTCATCGTAAATTTTACAATTGTGTGACAACGCGATGTTGTTATGGCAA
CTATTGCAATACCGTTTGGCCAGAGTACCACGAACAATGTAAACCTCCTT
TGACACCATCACCACTCCCGTCCACAACGAGCCGTTCGAAC Run BLAST on NCBI transcript from alignment at sc0001780:12631..14903+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00038130 ID=TCONS_00038130|Name=TCONS_00038130|organism=Clytia hemisphaerica|type=transcript|length=2273bp|location=Sequence derived from alignment at sc0001780:12631..14903+ (Clytia hemisphaerica)
gGACTACGACCATTTTGTTGCAGCCGGTTTTTGTGGGATCGGTCACGCAG
TGGATCTCCGCCATGAAGGAAAAGTGGCGTCACATACCAGCGGACCCGCA
GGTCATCGTAAATTTTACAATTGTGTGACAACGCGATGTTGTTATGGCAA
CTATTGCAATACCGTTTGGCCAGAGTACCACGAACAATGTAAGTTGAGAT
TTTGTACTCATTTCTTGAAGGCATACTTGGGTTATGTATGCCAAGTTGAt
ggttctacatctgcaatttgagctttactaagccTTCGCTCATTATATCA
TTCTCTCTCAatccggctgataatcgaagtatcgattgccgcagattgac
gtcaaattagCTTAGCAAAgttcaaattgcagatgtagaacgataaactg
gGTATACATTCACTCACCATCTGGATAAGGCTATCAATGTGTCTCACTAC
CATTCTGTCGATTGGTAGTGTGAGTGTTTTGATTACATCGAAACGGACTG
TGTAGTTTGAATTCCAAACACTTCCCGTAGAGTTtcatagtgtccttcag
ggtctcttcccccccccatgcctagaatgaaaaatttccattcccccccc
ccctcattttTCCCCGCCCTGCctccaaaaaattttctgtccCCCCCCCT
CACAATAAGCGTTAagttcatcaaattacagctttttaattttatgaact
taacgcttattgttttccctaaggtaattctaattcaagaataaatggaa
aggatggttgtttttaaaccataatattaataaaactaagcattatgcta
tatcatctcataaaaccagatgtttttcaattttgaattgattttggtga
gttccccccatgcctagaatgaaaaatttccattccccccccccctcatt
ttTCCCCGCCCTGCctccaaaaaattttctgtccCCCCCCCTCACAATAA
GCGTTAagttcatcaaattacagctttttaattttatgaacttaacgctt
attgttttccctaaggtaattctaattcaagaataaatggaaaggatggt
tgtttttaaaccataatattaataaaactaagcattatgctatatcatct
cataaaaccagatgtttttcaattttgaattgattttggtgagttccccc
catgcctagaatgaaaaatttccattccccccccccctcattttTCCCCG
CCCTGCctccaaaaaattttctgtccCCCCCCCTCACAATAAGCGTTAag
ttcatcaaattacagctttttaattttatgaacttaacgcttattgtttt
ccctaaggtaattctaattcaagaataaatggaaaggatggttgttttta
aaccataatattaataaaactaagcattatgctatatcatctcataaaac
cagatgtttttcaattttgaattgattttggtgagttccccccatgccta
gaatgaaaattttccattcccccccCCCTCATTCCCCCCcaccctggctt
caaaaaaaattctttcccccctatacgtccttttgaccCATTTTGGGGGA
GGGCACTATGAGTTTTAGGGAAACGTTGTGATAGACTTTACCTTCACTGA
TACTTTGGTTTTGTCCATAAGTTAGTTGTTCCCCACTAACGGACAAAACC
AAAGTATCATAAGGCTAAGCATTTATAAGGCTTCGCAAATAACTCAAATT
TCCGATGGGCTTTTCTCTCATAGCAGGATTAGATTTATAACATAATttta
agtacacgttttttttattagaacacctataatatggctgagcctggatg
tgcttatttttttagcaattttcagtctaaaatgttcttaagtgcattct
taatttttcagactactctaacttcataatatcatgcaaaataaatagca
cttaaaattggtaaaatttggacaatatttgactctcgattttagaaaat
ccatccctaactTTGGTTAAAGCTGCTTGAAAAGAgggaaaaattgtagt
ttcttgtcatttttttccaaactgaggctgggcatgctcttacgatgttc
ttaatttttcgacgaatttcagcctgaatgttcttataaactgggttcta
gttaaaaaaaacttgtaaattcgTTATCTTTCTGGAATGAAAATCCTACT
TTTTTTAGTAATAATGTATACAAAAATGAATATACATCAATTGTAATATT
AACGTTCTTTCCACACTAAGGTAAACCTCCTTTGACACCATCACCACTCC
CGTCCACAACGAGCCGTTCGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00038130-exon-sc0001780-1491911889:12631..12818 | TCONS_00038130-exon-sc0001780-1491911889:12631..12818 | Clytia hemisphaerica | exon |
| TCONS_00038130-exon-sc0001780-1510915933:12631..12818 | TCONS_00038130-exon-sc0001780-1510915933:12631..12818 | Clytia hemisphaerica | exon |
| TCONS_00038130-exon-sc0001780-1575043694:12631..12818 | TCONS_00038130-exon-sc0001780-1575043694:12631..12818 | Clytia hemisphaerica | exon |
| TCONS_00038130-exon-sc0001780-1491911889:14851..14903 | TCONS_00038130-exon-sc0001780-1491911889:14851..14903 | Clytia hemisphaerica | exon |
| TCONS_00038130-exon-sc0001780-1510915933:14851..14903 | TCONS_00038130-exon-sc0001780-1510915933:14851..14903 | Clytia hemisphaerica | exon |
| TCONS_00038130-exon-sc0001780-1575043694:14851..14903 | TCONS_00038130-exon-sc0001780-1575043694:14851..14903 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0001780 | supercontig | sc0001780:12631..14903 + |
Blast
The following BLAST results are available for this feature:
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