TCONS_00038129 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038129
Unique NameTCONS_00038129
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038129 ID=TCONS_00038129|Name=TCONS_00038129|organism=Clytia hemisphaerica|type=transcript|length=405bp
GCTAGATTAGAGAATATCATTTTATtagtttgaaaaattcaaaaaaaaac
gaaaatgccTGGGTCCTTTCAGACTCTGGGTTTTTTACCagCTCACAAGT
TCAACGTTTCACAACTGTCTAAAGATTTGAAGAATATGTCAATGGAGGAC
ATACATCGCCTTATCAACCAGACTGGATTTCGTAAAAGACCCTCCCCGAC
AACAACTCCTGAGAAAATCGAAATAACCGACTCAACTCAAAAAAAGAACG
CCACAACTTTACCACCCACCCATCCGACTTTACCGCCCACCCATGCGCCC
TTGAAACCCATCAAATGCTACTGTTCATCTTGCAAAAACAGCAACCACAC
ATGTACTGCTTACAACGGCTGCCATTCAGCAATCAAGTACCGCAAATATG
ACGGT
Run BLAST on NCBI

protein sequence of TCONS_00038129-protein

>TCONS_00038129-protein ID=TCONS_00038129-protein|Name=TCONS_00038129-protein|organism=Clytia hemisphaerica|type=polypeptide|length=117bp
MPGSFQTLGFLPAHKFNVSQLSKDLKNMSMEDIHRLINQTGFRKRPSPTT
TPEKIEITDSTQKKNATTLPPTHPTLPPTHAPLKPIKCYCSSCKNSNHTC
TAYNGCHSAIKYRKYDG
Run BLAST on NCBI

transcript from alignment at sc0001780:11613..12272+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038129 ID=TCONS_00038129|Name=TCONS_00038129|organism=Clytia hemisphaerica|type=transcript|length=660bp|location=Sequence derived from alignment at sc0001780:11613..12272+ (Clytia hemisphaerica)
GCTAGATTAGAGAATATCATTTTATtagtttgaaaaattcaaaaaaaaac
gaaaatgccTGGGTCCTTTCAGACTCTGGGTTTTTTACCaggtaacattt
tattttgtttttctttctttacatTGAGAAAGCAATTCTctatattcatg
acgtaatctttaaTACGAAAACACCCGAAAACACTGGGCGTTTGCCAcaa
gttttgaatttaaactatgaaactggtggcaaacgcctggtgttttttcg
tgttgttccgtataaaagatacgccatgaatatcatgaataaaatgattg
gttttatgacgtaatgttttcagCTTTCTTTGTATCTTTTCTTTAGCTCA
CAAGTTCAACGTTTCACAACTGTCTAAAGATTTGAAGAATATGTCAATGG
AGGACATACATCGCCTTATCAACCAGACTGGATTTCGTAAAAGACCCTCC
CCGACAACAACTCCTGAGAAAATCGAAATAACCGACTCAACTCAAAAAAA
GAACGCCACAACTTTACCACCCACCCATCCGACTTTACCGCCCACCCATG
CGCCCTTGAAACCCATCAAATGCTACTGTTCATCTTGCAAAAACAGCAAC
CACACATGTACTGCTTACAACGGCTGCCATTCAGCAATCAAGTACCGCAA
ATATGACGGT

Coding sequence (CDS) from alignment at sc0001780:11613..12272+

>TCONS_00038129 ID=TCONS_00038129|Name=TCONS_00038129|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0001780:11613..12272+ (Clytia hemisphaerica)
atgccTGGGTCCTTTCAGACTCTGGGTTTTTTACCagCTCACAAGTTCAA
CGTTTCACAACTGTCTAAAGATTTGAAGAATATGTCAATGGAGGACATAC
ATCGCCTTATCAACCAGACTGGATTTCGTAAAAGACCCTCCCCGACAACA
ACTCCTGAGAAAATCGAAATAACCGACTCAACTCAAAAAAAGAACGCCAC
AACTTTACCACCCACCCATCCGACTTTACCGCCCACCCATGCGCCCTTGA
AACCCATCAAATGCTACTGTTCATCTTGCAAAAACAGCAACCACACATGT
ACTGCTTACAACGGCTGCCATTCAGCAATCAAGTACCGCAAATATGACGG
TatgccTGGGTCCTTTCAGACTCTGGGTTTTTTACCagCTCACAAGTTCA
ACGTTTCACAACTGTCTAAAGATTTGAAGAATATGTCAATGGAGGACATA
CATCGCCTTATCAACCAGACTGGATTTCGTAAAAGACCCTCCCCGACAAC
AACTCCTGAGAAAATCGAAATAACCGACTCAACTCAAAAAAAGAACGCCA
CAACTTTACCACCCACCCATCCGACTTTACCGCCCACCCATGCGCCCTTG
AAACCCATCAAATGCTACTGTTCATCTTGCAAAAACAGCAACCACACATG
TACTGCTTACAACGGCTGCCATTCAGCAATCAAGTACCGCAAATATGACG
GT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022779XLOC_022779Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038129-proteinTCONS_00038129-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038129-exon-sc0001780-1491911889:11613..11703TCONS_00038129-exon-sc0001780-1491911889:11613..11703Clytia hemisphaericaexon
TCONS_00038129-exon-sc0001780-1510915933:11613..11703TCONS_00038129-exon-sc0001780-1510915933:11613..11703Clytia hemisphaericaexon
TCONS_00038129-exon-sc0001780-1575043694:11613..11703TCONS_00038129-exon-sc0001780-1575043694:11613..11703Clytia hemisphaericaexon
TCONS_00038129-exon-sc0001780-1491911889:11959..12272TCONS_00038129-exon-sc0001780-1491911889:11959..12272Clytia hemisphaericaexon
TCONS_00038129-exon-sc0001780-1510915933:11959..12272TCONS_00038129-exon-sc0001780-1510915933:11959..12272Clytia hemisphaericaexon
TCONS_00038129-exon-sc0001780-1575043694:11959..12272TCONS_00038129-exon-sc0001780-1575043694:11959..12272Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001780supercontigsc0001780:11613..12272 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.565994	0.963119	1.60829	0.65161	5.71266	7.20086	3.88993	6.61956	2.07124	2.24321	0.601327	1.24202	2.77511	3.46176	3.56799	3.92335	5.3485	5.97947	5.38678	3.12032	5.17206	4.41903	5.02542	5.40794	4.19064	6.78976	19.6224	11.9803	17.5584	15.4769
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038129 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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