TCONS_00038124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038124
Unique NameTCONS_00038124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038124 ID=TCONS_00038124|Name=TCONS_00038124|organism=Clytia hemisphaerica|type=transcript|length=334bp
tgccaataaaaaaactattgccaatgaaaaaaatattgccaataaaaaag
tattGGCAGTAAAAAATTATTGCCAATAAATTTTCTCATTCAATAAGTTT
TCAGTAAAGGTTGAATGAAGGTCTCCACAATAGATATATCACGTGATCAC
TTAAAAAATTCGTGATTGTTTACTTGGAACCTCAGCCATACATCAATGAT
TGAAAAGCACACAGCGCGCTAGATAAAGCGTAATGAAATGCGCCACAGCG
AATTTTCTACCTCATTTCATTGCTCGGTCCGCATGGTTTTCACACAACCG
ACGGATTGAAGGTAAAATCGACTATTAATTTGAA
Run BLAST on NCBI

transcript from alignment at sc0001779:17398..17731

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038124 ID=TCONS_00038124|Name=TCONS_00038124|organism=Clytia hemisphaerica|type=transcript|length=334bp|location=Sequence derived from alignment at sc0001779:17398..17731 (Clytia hemisphaerica)
TTCAAATTAATAGTCGATTTTACCTTCAATCCGTCGGTTGTGTGAAAACC
ATGCGGACCGAGCAATGAAATGAGGTAGAAAATTCGCTGTGGCGCATTTC
ATTACGCTTTATCTAGCGCGCTGTGTGCTTTTCAATCATTGATGTATGGC
TGAGGTTCCAAGTAAACAATCACGAATTTTTTAAGTGATCACGTGATATA
TCTATTGTGGAGACCTTCATTCAACCTTTACTGAAAACTTATTGAATGAG
AAAATTTATTGGCAATAATTTTTTACTGCCaatacttttttattggcaat
atttttttcattggcaatagtttttttattggca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022774XLOC_022774Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038124-exon-sc0001779-1491911889:17398..17731TCONS_00038124-exon-sc0001779-1491911889:17398..17731Clytia hemisphaericaexon
TCONS_00038124-exon-sc0001779-1510915933:17398..17731TCONS_00038124-exon-sc0001779-1510915933:17398..17731Clytia hemisphaericaexon
TCONS_00038124-exon-sc0001779-1575043694:17398..17731TCONS_00038124-exon-sc0001779-1575043694:17398..17731Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001779supercontigsc0001779:17398..17731 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.825829	0	1.08847	1.66358	0.765486	0	0	0.341607	1.58733	0.94006	0.287545	0.727812	1.23273	0.58808	0.322321	0.3459	0	0.308538	0.494722	0.315711	0.706517	0.606054	0	0.591706	2.67054	4.57343	0	0	0.763142	1.17946
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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