TCONS_00038123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038123
Unique NameTCONS_00038123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length747

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038123 ID=TCONS_00038123|Name=TCONS_00038123|organism=Clytia hemisphaerica|type=transcript|length=747bp
GTTTTATGAGGTTCTAGAAGTGcattgtaagggtgtacttttgaggAAGT
GCACTGTAAGCATGAATATATTTTTGGGTAAAAATGATAATTCAAGACTA
AACCGAATTtactaaaaattttcattctcttctttttactttcaaaaagc
CCATATTTGTATGATTCTCACCGTTTTTAAATATCCCAGGGTAATTCTTA
AGAAAAGGGACACGGTAATATACTGCATTATAAGGGTTTGAACTCGGTAA
AATAATGCACTATTGAGTGAAAAAAAAGGGCATAATTTTATGCATAATTG
TAGgtggtggaataagcaggggtgAGTACTTATGGGGAAGAACTACCTGT
TTTTTGCACTGTACTGGTGCTGGCTGTCTGAATAGCATTACCTACTGCAC
TGGGGGAGACAGATACTTACCCCTGGAGGGTCAAGAAAAGTACCCAATCT
AAACTGTTAAATTGCATTACAGAAGGTTATCAAGCAAGTTTACCAACATC
CCGACAGCCAACCAGCCAACCTCCTTCAGTCCTTTTCTCAAGTTTTGCTT
TGCAAGAAATTCACATGTTTATTTTTCGTGCGAAAGAATCACGAATTATA
TCACGTGACCGGtgtaaaaaatgttgaaatgttgtcacgtgatttttTTG
AAGAGACAAAATACATTCAACGTTTGCTAAAAACTTattgaatgagaaaa
aaattattggcaataatttttttattggcaatatttttttattgaca
Run BLAST on NCBI

transcript from alignment at sc0001779:16376..17122

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038123 ID=TCONS_00038123|Name=TCONS_00038123|organism=Clytia hemisphaerica|type=transcript|length=747bp|location=Sequence derived from alignment at sc0001779:16376..17122 (Clytia hemisphaerica)
tgtcaataaaaaaatattgccaataaaaaaattattgccaataatttttt
tctcattcaatAAGTTTTTAGCAAACGTTGAATGTATTTTGTCTCTTCAA
aaaaatcacgtgacaacatttcaacattttttacaCCGGTCACGTGATAT
AATTCGTGATTCTTTCGCACGAAAAATAAACATGTGAATTTCTTGCAAAG
CAAAACTTGAGAAAAGGACTGAAGGAGGTTGGCTGGTTGGCTGTCGGGAT
GTTGGTAAACTTGCTTGATAACCTTCTGTAATGCAATTTAACAGTTTAGA
TTGGGTACTTTTCTTGACCCTCCAGGGGTAAGTATCTGTCTCCCCCAGTG
CAGTAGGTAATGCTATTCAGACAGCCAGCACCAGTACAGTGCAAAAAACA
GGTAGTTCTTCCCCATAAGTACTcacccctgcttattccaccacCTACAA
TTATGCATAAAATTATGCCCTTTTTTTTCACTCAATAGTGCATTATTTTA
CCGAGTTCAAACCCTTATAATGCAGTATATTACCGTGTCCCTTTTCTTAA
GAATTACCCTGGGATATTTAAAAACGGTGAGAATCATACAAATATGGgct
ttttgaaagtaaaaagaagagaatgaaaatttttagtaAATTCGGTTTAG
TCTTGAATTATCATTTTTACCCAAAAATATATTCATGCTTACAGTGCACT
TcctcaaaagtacacccttacaatgCACTTCTAGAACCTCATAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022773XLOC_022773Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038123-exon-sc0001779-1491911889:16376..17122TCONS_00038123-exon-sc0001779-1491911889:16376..17122Clytia hemisphaericaexon
TCONS_00038123-exon-sc0001779-1510915933:16376..17122TCONS_00038123-exon-sc0001779-1510915933:16376..17122Clytia hemisphaericaexon
TCONS_00038123-exon-sc0001779-1575043694:16376..17122TCONS_00038123-exon-sc0001779-1575043694:16376..17122Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001779supercontigsc0001779:16376..17122 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.133874	0.250486	0.397109	0.735047	0.622502	0.351364	0.569744	0.317484	0.241495	0.97645	0	0.767725	0.662311	1.3313	0	0.157242	0.130917	0.111468	0.280399	0.261266	0.15626	0.13164	0.302439	0.153468	3.32808	2.39382	0.180844	0.335316	0.0843769	0.39533
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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