TCONS_00038122 (transcript) - C. hemisphaerica

Overview
NameTCONS_00038122
Unique NameTCONS_00038122
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length874

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00038122 ID=TCONS_00038122|Name=TCONS_00038122|organism=Clytia hemisphaerica|type=transcript|length=874bp
cTAGATTAtgattcctttgagagtccctagaaaccagaatacATTGCATT
TATCTAGATCCGATATCGTCTGTTATCATTTTTACACGAGCGATCTGAAT
gcaattggattttcatcgaaaacaAGAGGGTATCGAATGATACAGTTGAC
CTTCTCtaataatgaaaatataaacataTAAATATTTAAACCACTGGCTG
GTTTcattgccgcctcgttaaaaacataaaggggccgtccacatagtgcG
TACGCAATAAATATCGAAAATCAAGTACCTCCCCCCCGCTTTTTAGAAGA
TGGTTAAACTCTTTTTAACTCTTTAATTTACATTAAGAGGAATGTAAGAG
AGGCAAAATACTTTGTTAACTTGTTGTAGCTCCggctgatattttgaaat
ttcgactgaAAAGTATAGATTTTAGAGAGTATGAGGTTCGAATTATTGTA
CTCCTCTTGTACAATATTTAAACTTGGGTATAGGGGGACGGTATactatt
tttttcgatttttgaagtgaCAAAAgttgattcaaaagtatacacgcagt
tgagaATCTTCATTTCAGCGCTGttaaatgttgataaaatataatattgc
aaacttgagaaaaaaatgagaataattCGTTTGTGAACTACGAACGATGT
TCAAGCTCTATTAATTCCTTTTATCTAAGAATTCAATATTccatgacgga
atattgtcggattttttaaaccaaatttgaaatacaggcggcaacgaaac
TCGCTTCAAAGAAATAAtaaaagatagacgtccagtcgtttatatgttca
tgctctAACTCAATCTTCAAGGGCCGGAGAACTATAAAGAGAATTCGGGT
TATAGAAAGTATCTTACTTCATTT
Run BLAST on NCBI

transcript from alignment at sc0001779:9427..10300

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00038122 ID=TCONS_00038122|Name=TCONS_00038122|organism=Clytia hemisphaerica|type=transcript|length=874bp|location=Sequence derived from alignment at sc0001779:9427..10300 (Clytia hemisphaerica)
AAATGAAGTAAGATACTTTCTATAACCCGAATTCTCTTTATAGTTCTCCG
GCCCTTGAAGATTGAGTTagagcatgaacatataaacgactggacgtcta
tcttttaTTATTTCTTTGAAGCGAgtttcgttgccgcctgtatttcaaat
ttggtttaaaaaatccgacaatattccgtcatggAATATTGAATTCTTAG
ATAAAAGGAATTAATAGAGCTTGAACATCGTTCGTAGTTCACAAACGaat
tattctcatttttttctcaagtttgcaatattatattttatcaacattta
aCAGCGCTGAAATGAAGATtctcaactgcgtgtatacttttgaatcaacT
TTTGtcacttcaaaaatcgaaaaaaatagtATACCGTCCCCCTATACCCA
AGTTTAAATATTGTACAAGAGGAGTACAATAATTCGAACCTCATACTCTC
TAAAATCTATACTTTtcagtcgaaatttcaaaatatcagccGGAGCTACA
ACAAGTTAACAAAGTATTTTGCCTCTCTTACATTCCTCTTAATGTAAATT
AAAGAGTTAAAAAGAGTTTAACCATCTTCTAAAAAGCGGGGGGGAGGTAC
TTGATTTTCGATATTTATTGCGTACgcactatgtggacggcccctttatg
tttttaacgaggcggcaatgAAACCAGCCAGTGGTTTAAATATTTAtatg
tttatattttcattattaGAGAAGGTCAACTGTATCATTCGATACCCTCT
tgttttcgatgaaaatccaattgcATTCAGATCGCTCGTGTAAAAATGAT
AACAGACGATATCGGATCTAGATAAATGCAATgtattctggtttctaggg
actctcaaaggaatcaTAATCTAg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_022772XLOC_022772Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00038122-exon-sc0001779-1491911889:9427..10300TCONS_00038122-exon-sc0001779-1491911889:9427..10300Clytia hemisphaericaexon
TCONS_00038122-exon-sc0001779-1510915933:9427..10300TCONS_00038122-exon-sc0001779-1510915933:9427..10300Clytia hemisphaericaexon
TCONS_00038122-exon-sc0001779-1575043694:9427..10300TCONS_00038122-exon-sc0001779-1575043694:9427..10300Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0001779supercontigsc0001779:9427..10300 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0661429	0.104049	0.0604056	0.177292	0.575564	0.227409	0.754488	1.21381	0.486217	0.556865	0.540507	0.42637	1.17089	0.773803	1.0459	1.75554	1.12139	1.97038	3.04387	1.78036	2.88858	4.3778	1.77393	2.00205	1.20287	2.14707	6.50969	5.07463	5.09243	3.0165
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00038122 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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